Wall clock time and date at job start Tue Mar 31 2020 21:05:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 O 1.21277 * 120.00069 * 2 1 4 4 N 1.34774 * 120.00032 * 179.97438 * 2 1 3 5 5 C 1.46500 * 120.00077 * 184.59180 * 4 2 1 6 6 H 1.08990 * 109.47420 * 35.42328 * 5 4 2 7 7 C 1.50696 * 109.47158 * 155.42699 * 5 4 2 8 8 O 1.20833 * 120.00256 * 359.97438 * 7 5 4 9 9 O 1.34229 * 120.00006 * 179.97438 * 7 5 4 10 10 C 1.45209 * 117.00212 * 179.97438 * 9 7 5 11 11 C 1.53034 * 109.45903 * 270.07067 * 10 9 7 12 12 C 1.53190 * 109.31020 * 178.61192 * 11 10 9 13 13 N 1.46923 * 108.77857 * 54.63583 * 12 11 10 14 14 C 1.36935 * 120.63541 * 126.41330 * 13 12 11 15 15 H 1.08001 * 119.99710 * 323.14033 * 14 13 12 16 16 C 1.38809 * 120.00281 * 143.14494 * 14 13 12 17 17 N 1.31613 * 120.00050 * 350.00284 * 16 14 13 18 18 Si 1.86801 * 120.00009 * 170.00306 * 16 14 13 19 19 H 1.48500 * 109.46900 * 60.00058 * 18 16 14 20 20 H 1.48500 * 109.47212 * 179.97438 * 18 16 14 21 21 H 1.48497 * 109.47155 * 300.00113 * 18 16 14 22 22 C 1.46930 * 118.73514 * 306.38916 * 13 12 11 23 23 C 1.53034 * 109.46307 * 149.99754 * 10 9 7 24 24 C 1.53000 * 109.46904 * 275.42467 * 5 4 2 25 25 C 1.54268 * 110.03414 * 291.66096 * 24 5 4 26 26 C 1.54887 * 104.19657 * 217.10532 * 25 24 5 27 27 C 1.54885 * 102.74884 * 37.94697 * 26 25 24 28 28 C 1.53880 * 110.03359 * 174.49781 * 24 5 4 29 29 H 1.09003 * 109.47365 * 240.00407 * 1 2 3 30 30 H 1.09001 * 109.47262 * 359.97438 * 1 2 3 31 31 H 1.08998 * 109.47285 * 119.99852 * 1 2 3 32 32 H 0.96996 * 119.99866 * 4.86832 * 4 2 1 33 33 H 1.08999 * 109.45587 * 30.02764 * 10 9 7 34 34 H 1.09000 * 109.49903 * 298.56017 * 11 10 9 35 35 H 1.09008 * 109.50018 * 58.66097 * 11 10 9 36 36 H 1.09000 * 109.59004 * 294.84443 * 12 11 10 37 37 H 1.09002 * 109.70646 * 174.49226 * 12 11 10 38 38 H 0.96997 * 120.00597 * 180.02562 * 17 16 14 39 39 H 1.08991 * 109.58903 * 293.82212 * 22 13 12 40 40 H 1.09000 * 109.70286 * 173.46051 * 22 13 12 41 41 H 1.09002 * 109.50264 * 301.34247 * 23 10 9 42 42 H 1.09005 * 109.49746 * 61.40046 * 23 10 9 43 43 H 1.08997 * 110.01771 * 53.10653 * 24 5 4 44 44 H 1.08996 * 110.48663 * 335.78714 * 25 24 5 45 45 H 1.09007 * 110.48182 * 98.42970 * 25 24 5 46 46 H 1.09002 * 110.75736 * 279.62550 * 26 25 24 47 47 H 1.09007 * 110.91247 * 156.32952 * 26 25 24 48 48 H 1.09004 * 110.48817 * 203.37929 * 27 26 25 49 49 H 1.08997 * 110.60349 * 80.78651 * 27 26 25 50 50 H 1.09002 * 110.03344 * 238.57044 * 28 24 5 51 51 H 1.09005 * 110.02841 * 359.97438 * 28 24 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 8 2.1133 1.0503 0.0000 4 7 2.1808 -1.1672 0.0005 5 6 3.6423 -1.1692 0.1021 6 1 3.9623 -0.3566 0.7541 7 6 4.1042 -2.4843 0.6747 8 8 3.2956 -3.3328 0.9684 9 8 5.4140 -2.7132 0.8586 10 6 5.7864 -4.0019 1.4148 11 6 5.8243 -3.9063 2.9417 12 6 6.1835 -5.2760 3.5262 13 7 7.4403 -5.7346 2.9189 14 6 8.4964 -6.1147 3.7033 15 1 8.7020 -5.5888 4.6239 16 6 9.3026 -7.1759 3.3152 17 7 8.9439 -7.9400 2.3054 18 14 10.8968 -7.5196 4.2262 19 1 10.6006 -7.7977 5.6546 20 1 11.5682 -8.6982 3.6218 21 1 11.7886 -6.3364 4.1269 22 6 7.5423 -5.7780 1.4537 23 6 7.1678 -4.4027 0.8925 24 6 4.2504 -0.9768 -1.2886 25 6 3.9802 -2.2206 -2.1603 26 6 5.2720 -2.3845 -2.9991 27 6 6.3847 -2.0042 -1.9910 28 6 5.7792 -0.8392 -1.1810 29 1 -0.3634 -0.5138 0.8900 30 1 -0.3634 1.0277 0.0005 31 1 -0.3634 -0.5138 -0.8900 32 1 1.6984 -2.0057 -0.0704 33 1 5.0537 -4.7516 1.1161 34 1 6.5744 -3.1747 3.2419 35 1 4.8463 -3.5981 3.3114 36 1 5.3889 -5.9882 3.3035 37 1 6.3082 -5.1937 4.6059 38 1 9.5071 -8.6818 2.0344 39 1 6.8585 -6.5310 1.0620 40 1 8.5634 -6.0254 1.1636 41 1 7.1462 -4.4478 -0.1964 42 1 7.9052 -3.6660 1.2114 43 1 3.8280 -0.0899 -1.7611 44 1 3.8184 -3.0977 -1.5337 45 1 3.1219 -2.0515 -2.8106 46 1 5.2703 -1.7014 -3.8485 47 1 5.3902 -3.4150 -3.3342 48 1 7.2812 -1.6771 -2.5177 49 1 6.6133 -2.8454 -1.3366 50 1 6.0989 0.1141 -1.6020 51 1 6.0879 -0.9090 -0.1379 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000119348782.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:05:31 Heat of formation + Delta-G solvation = -122.892702 kcal Electronic energy + Delta-G solvation = -31484.015102 eV Core-core repulsion = 27383.035295 eV Total energy + Delta-G solvation = -4100.979808 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.204 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -41.20348 -39.66305 -38.13364 -37.47204 -35.98602 -34.62463 -32.75786 -31.40294 -30.36427 -29.74989 -29.12955 -28.70354 -26.18912 -24.97912 -22.64235 -22.23680 -21.43486 -20.97837 -20.49594 -19.63163 -19.26379 -17.90443 -17.43959 -16.87210 -16.56380 -16.28418 -15.65041 -15.41787 -15.19064 -14.87056 -14.48649 -14.03175 -13.94109 -13.68360 -13.57621 -13.43913 -13.10327 -12.92324 -12.79335 -12.67340 -12.56593 -12.49696 -11.58077 -11.55162 -11.28956 -11.25550 -11.13832 -11.13230 -11.04995 -10.94650 -10.80587 -10.77329 -10.58401 -10.42821 -10.29172 -10.21186 -10.20358 -10.01385 -9.68448 -9.50066 -9.39881 -8.54229 -6.63410 -5.86493 -3.39371 2.15372 2.25470 2.46758 3.14260 3.34915 3.40156 3.41275 4.34201 4.39451 4.43397 4.45417 4.61375 4.69525 4.92432 5.03058 5.05822 5.10854 5.20236 5.30067 5.37167 5.38585 5.43543 5.44740 5.49531 5.52469 5.61779 5.65510 5.67428 5.75185 5.88531 5.92839 6.01469 6.06087 6.11216 6.18286 6.24760 6.33366 6.34771 6.36748 6.48388 6.57310 6.71354 6.76606 6.91535 7.16493 7.21240 7.49731 7.75074 7.77046 7.90120 8.43934 9.15202 9.74214 10.36143 11.22485 Molecular weight = 338.20amu Principal moments of inertia in cm(-1) A = 0.019142 B = 0.002856 C = 0.002639 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1462.404496 B = 9802.503147 C =10606.116184 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.516 3.484 3 O -0.544 6.544 4 N -0.717 5.717 5 C 0.158 3.842 6 H 0.121 0.879 7 C 0.463 3.537 8 O -0.510 6.510 9 O -0.341 6.341 10 C 0.098 3.902 11 C -0.146 4.146 12 C 0.149 3.851 13 N -0.590 5.590 14 C -0.262 4.262 15 H 0.062 0.938 16 C 0.012 3.988 17 N -0.901 5.901 18 Si 0.905 3.095 19 H -0.281 1.281 20 H -0.290 1.290 21 H -0.282 1.282 22 C 0.179 3.821 23 C -0.134 4.134 24 C -0.094 4.094 25 C -0.123 4.123 26 C -0.123 4.123 27 C -0.126 4.126 28 C -0.120 4.120 29 H 0.090 0.910 30 H 0.094 0.906 31 H 0.089 0.911 32 H 0.411 0.589 33 H 0.078 0.922 34 H 0.068 0.932 35 H 0.053 0.947 36 H 0.021 0.979 37 H 0.061 0.939 38 H 0.256 0.744 39 H 0.023 0.977 40 H 0.087 0.913 41 H 0.058 0.942 42 H 0.067 0.933 43 H 0.090 0.910 44 H 0.063 0.937 45 H 0.065 0.935 46 H 0.065 0.935 47 H 0.066 0.934 48 H 0.064 0.936 49 H 0.077 0.923 50 H 0.065 0.935 51 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.460 13.774 -9.692 21.560 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C 0.303 3.697 3 O -0.421 6.421 4 N -0.372 5.372 5 C 0.051 3.949 6 H 0.139 0.861 7 C 0.305 3.695 8 O -0.399 6.399 9 O -0.257 6.257 10 C 0.045 3.955 11 C -0.186 4.186 12 C 0.023 3.977 13 N -0.313 5.313 14 C -0.392 4.392 15 H 0.080 0.920 16 C -0.188 4.188 17 N -0.544 5.544 18 Si 0.734 3.266 19 H -0.207 1.207 20 H -0.215 1.215 21 H -0.208 1.208 22 C 0.053 3.947 23 C -0.174 4.174 24 C -0.114 4.114 25 C -0.160 4.160 26 C -0.161 4.161 27 C -0.163 4.163 28 C -0.158 4.158 29 H 0.109 0.891 30 H 0.112 0.888 31 H 0.108 0.892 32 H 0.248 0.752 33 H 0.096 0.904 34 H 0.087 0.913 35 H 0.072 0.928 36 H 0.038 0.962 37 H 0.079 0.921 38 H 0.066 0.934 39 H 0.041 0.959 40 H 0.105 0.895 41 H 0.077 0.923 42 H 0.086 0.914 43 H 0.109 0.891 44 H 0.082 0.918 45 H 0.084 0.916 46 H 0.083 0.917 47 H 0.085 0.915 48 H 0.082 0.918 49 H 0.096 0.904 50 H 0.084 0.916 51 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -13.138 14.069 -9.612 21.516 hybrid contribution 0.419 -0.814 0.486 1.037 sum -12.718 13.254 -9.126 20.511 Atomic orbital electron populations 1.21908 0.91060 1.05647 1.04602 1.20833 0.90733 0.82969 0.75137 1.90738 1.70795 1.31278 1.49272 1.45865 1.05902 1.10111 1.75283 1.20634 0.81543 0.94114 0.98587 0.86141 1.23287 0.82317 0.88935 0.74931 1.90649 1.54776 1.46311 1.48126 1.86611 1.24355 1.40546 1.74188 1.22990 0.97926 0.80780 0.93854 1.22475 1.00743 1.01610 0.93770 1.20873 0.89296 0.90836 0.96720 1.43985 1.09816 1.76349 1.01124 1.19063 1.04966 1.09897 1.05236 0.92007 1.25313 1.00057 0.95125 0.98275 1.69951 1.37527 1.18008 1.28921 0.86350 0.83297 0.77457 0.79481 1.20719 1.21543 1.20793 1.20714 1.01545 0.89006 0.83450 1.22493 0.93413 1.02014 0.99453 1.22145 0.96893 0.99699 0.92674 1.22498 0.98353 0.96944 0.98250 1.22469 0.94513 1.01326 0.97755 1.22413 0.97523 0.98870 0.97492 1.22214 0.92554 0.98780 1.02220 0.89084 0.88758 0.89240 0.75247 0.90357 0.91333 0.92812 0.96150 0.92096 0.93376 0.95908 0.89513 0.92340 0.91389 0.89148 0.91797 0.91602 0.91664 0.91512 0.91771 0.90396 0.91623 0.89894 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.01 10.32 36.00 0.37 -0.64 16 2 C 0.52 5.17 7.89 -10.99 -0.09 5.08 16 3 O -0.54 -7.52 16.76 5.56 0.09 -7.42 16 4 N -0.72 -7.09 4.78 -54.94 -0.26 -7.35 16 5 C 0.16 1.81 2.10 -69.08 -0.14 1.67 16 6 H 0.12 1.46 7.66 -51.93 -0.40 1.06 16 7 C 0.46 6.45 5.44 36.00 0.20 6.65 16 8 O -0.51 -8.09 15.00 -18.76 -0.28 -8.37 16 9 O -0.34 -5.10 6.49 -39.25 -0.25 -5.36 16 10 C 0.10 1.70 2.41 -26.70 -0.06 1.63 16 11 C -0.15 -2.64 5.72 -26.62 -0.15 -2.80 16 12 C 0.15 3.15 6.52 -3.71 -0.02 3.13 16 13 N -0.59 -14.50 2.95 -172.33 -0.51 -15.01 16 14 C -0.26 -7.05 9.51 -15.06 -0.14 -7.19 16 15 H 0.06 1.64 7.85 -52.49 -0.41 1.23 16 16 C 0.01 0.33 5.03 -17.43 -0.09 0.24 16 17 N -0.90 -25.58 11.44 55.49 0.64 -24.95 16 18 Si 0.90 21.25 29.57 -169.99 -5.03 16.22 16 19 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 20 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 21 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 22 C 0.18 4.10 5.22 -3.71 -0.02 4.08 16 23 C -0.13 -2.46 5.60 -26.62 -0.15 -2.60 16 24 C -0.09 -0.99 2.90 -89.50 -0.26 -1.25 16 25 C -0.12 -1.25 6.01 -25.07 -0.15 -1.40 16 26 C -0.12 -1.22 6.91 -24.74 -0.17 -1.39 16 27 C -0.13 -1.36 6.67 -25.07 -0.17 -1.53 16 28 C -0.12 -1.28 5.69 -25.61 -0.15 -1.42 16 29 H 0.09 0.42 8.14 -51.93 -0.42 0.00 16 30 H 0.09 0.54 8.12 -51.93 -0.42 0.12 16 31 H 0.09 0.35 8.14 -51.93 -0.42 -0.07 16 32 H 0.41 3.64 7.79 -40.82 -0.32 3.33 16 33 H 0.08 1.46 7.16 -51.93 -0.37 1.09 16 34 H 0.07 1.25 8.14 -51.93 -0.42 0.83 16 35 H 0.05 0.91 8.14 -51.92 -0.42 0.49 16 36 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 37 H 0.06 1.26 7.93 -51.93 -0.41 0.85 16 38 H 0.26 7.04 8.31 -40.82 -0.34 6.70 16 39 H 0.02 0.55 8.14 -51.93 -0.42 0.13 16 40 H 0.09 2.20 6.53 -51.93 -0.34 1.86 16 41 H 0.06 0.95 6.84 -51.93 -0.36 0.60 16 42 H 0.07 1.27 8.14 -51.93 -0.42 0.84 16 43 H 0.09 0.97 8.10 -51.93 -0.42 0.55 16 44 H 0.06 0.76 6.31 -51.93 -0.33 0.43 16 45 H 0.07 0.59 8.14 -51.92 -0.42 0.17 16 46 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 47 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 48 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 49 H 0.08 0.98 5.88 -51.93 -0.31 0.68 16 50 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 51 H 0.08 0.98 6.03 -51.93 -0.31 0.66 16 LS Contribution 394.46 15.07 5.94 5.94 Total: -1.00 -30.92 394.46 -9.46 -40.38 By element: Atomic # 1 Polarization: 12.26 SS G_CDS: -8.60 Total: 3.65 kcal Atomic # 6 Polarization: 3.46 SS G_CDS: -1.20 Total: 2.26 kcal Atomic # 7 Polarization: -47.18 SS G_CDS: -0.14 Total: -47.31 kcal Atomic # 8 Polarization: -20.70 SS G_CDS: -0.44 Total: -21.15 kcal Atomic # 14 Polarization: 21.25 SS G_CDS: -5.03 Total: 16.22 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -30.92 -9.46 -40.38 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000119348782.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -82.515 kcal (2) G-P(sol) polarization free energy of solvation -30.917 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.432 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.461 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.378 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.893 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds