Wall clock time and date at job start Tue Mar 31 2020 21:05:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 O 1.21277 * 120.00069 * 2 1 4 4 N 1.34774 * 120.00032 * 179.97438 * 2 1 3 5 5 C 1.46500 * 120.00077 * 184.59180 * 4 2 1 6 6 H 1.08990 * 109.47420 * 35.42328 * 5 4 2 7 7 C 1.50696 * 109.47158 * 155.42699 * 5 4 2 8 8 O 1.20833 * 120.00256 * 359.97438 * 7 5 4 9 9 O 1.34229 * 120.00006 * 179.97438 * 7 5 4 10 10 C 1.45209 * 117.00212 * 179.97438 * 9 7 5 11 11 C 1.53034 * 109.45903 * 270.07067 * 10 9 7 12 12 C 1.53190 * 109.31020 * 178.61192 * 11 10 9 13 13 N 1.46923 * 108.77857 * 54.63583 * 12 11 10 14 14 C 1.36935 * 120.63541 * 126.41330 * 13 12 11 15 15 H 1.08001 * 119.99710 * 323.14033 * 14 13 12 16 16 C 1.38809 * 120.00281 * 143.14494 * 14 13 12 17 17 N 1.31613 * 120.00050 * 350.00284 * 16 14 13 18 18 Si 1.86801 * 120.00009 * 170.00306 * 16 14 13 19 19 H 1.48500 * 109.46900 * 60.00058 * 18 16 14 20 20 H 1.48500 * 109.47212 * 179.97438 * 18 16 14 21 21 H 1.48497 * 109.47155 * 300.00113 * 18 16 14 22 22 C 1.46930 * 118.73514 * 306.38916 * 13 12 11 23 23 C 1.53034 * 109.46307 * 149.99754 * 10 9 7 24 24 C 1.53000 * 109.46904 * 275.42467 * 5 4 2 25 25 C 1.54268 * 110.03414 * 291.66096 * 24 5 4 26 26 C 1.54887 * 104.19657 * 217.10532 * 25 24 5 27 27 C 1.54885 * 102.74884 * 37.94697 * 26 25 24 28 28 C 1.53880 * 110.03359 * 174.49781 * 24 5 4 29 29 H 1.09003 * 109.47365 * 240.00407 * 1 2 3 30 30 H 1.09001 * 109.47262 * 359.97438 * 1 2 3 31 31 H 1.08998 * 109.47285 * 119.99852 * 1 2 3 32 32 H 0.96996 * 119.99866 * 4.86832 * 4 2 1 33 33 H 1.08999 * 109.45587 * 30.02764 * 10 9 7 34 34 H 1.09000 * 109.49903 * 298.56017 * 11 10 9 35 35 H 1.09008 * 109.50018 * 58.66097 * 11 10 9 36 36 H 1.09000 * 109.59004 * 294.84443 * 12 11 10 37 37 H 1.09002 * 109.70646 * 174.49226 * 12 11 10 38 38 H 0.96997 * 120.00597 * 180.02562 * 17 16 14 39 39 H 1.08991 * 109.58903 * 293.82212 * 22 13 12 40 40 H 1.09000 * 109.70286 * 173.46051 * 22 13 12 41 41 H 1.09002 * 109.50264 * 301.34247 * 23 10 9 42 42 H 1.09005 * 109.49746 * 61.40046 * 23 10 9 43 43 H 1.08997 * 110.01771 * 53.10653 * 24 5 4 44 44 H 1.08996 * 110.48663 * 335.78714 * 25 24 5 45 45 H 1.09007 * 110.48182 * 98.42970 * 25 24 5 46 46 H 1.09002 * 110.75736 * 279.62550 * 26 25 24 47 47 H 1.09007 * 110.91247 * 156.32952 * 26 25 24 48 48 H 1.09004 * 110.48817 * 203.37929 * 27 26 25 49 49 H 1.08997 * 110.60349 * 80.78651 * 27 26 25 50 50 H 1.09002 * 110.03344 * 238.57044 * 28 24 5 51 51 H 1.09005 * 110.02841 * 359.97438 * 28 24 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 8 2.1133 1.0503 0.0000 4 7 2.1808 -1.1672 0.0005 5 6 3.6423 -1.1692 0.1021 6 1 3.9623 -0.3566 0.7541 7 6 4.1042 -2.4843 0.6747 8 8 3.2956 -3.3328 0.9684 9 8 5.4140 -2.7132 0.8586 10 6 5.7864 -4.0019 1.4148 11 6 5.8243 -3.9063 2.9417 12 6 6.1835 -5.2760 3.5262 13 7 7.4403 -5.7346 2.9189 14 6 8.4964 -6.1147 3.7033 15 1 8.7020 -5.5888 4.6239 16 6 9.3026 -7.1759 3.3152 17 7 8.9439 -7.9400 2.3054 18 14 10.8968 -7.5196 4.2262 19 1 10.6006 -7.7977 5.6546 20 1 11.5682 -8.6982 3.6218 21 1 11.7886 -6.3364 4.1269 22 6 7.5423 -5.7780 1.4537 23 6 7.1678 -4.4027 0.8925 24 6 4.2504 -0.9768 -1.2886 25 6 3.9802 -2.2206 -2.1603 26 6 5.2720 -2.3845 -2.9991 27 6 6.3847 -2.0042 -1.9910 28 6 5.7792 -0.8392 -1.1810 29 1 -0.3634 -0.5138 0.8900 30 1 -0.3634 1.0277 0.0005 31 1 -0.3634 -0.5138 -0.8900 32 1 1.6984 -2.0057 -0.0704 33 1 5.0537 -4.7516 1.1161 34 1 6.5744 -3.1747 3.2419 35 1 4.8463 -3.5981 3.3114 36 1 5.3889 -5.9882 3.3035 37 1 6.3082 -5.1937 4.6059 38 1 9.5071 -8.6818 2.0344 39 1 6.8585 -6.5310 1.0620 40 1 8.5634 -6.0254 1.1636 41 1 7.1462 -4.4478 -0.1964 42 1 7.9052 -3.6660 1.2114 43 1 3.8280 -0.0899 -1.7611 44 1 3.8184 -3.0977 -1.5337 45 1 3.1219 -2.0515 -2.8106 46 1 5.2703 -1.7014 -3.8485 47 1 5.3902 -3.4150 -3.3342 48 1 7.2812 -1.6771 -2.5177 49 1 6.6133 -2.8454 -1.3366 50 1 6.0989 0.1141 -1.6020 51 1 6.0879 -0.9090 -0.1379 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000119348782.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:05:29 Heat of formation + Delta-G solvation = -139.993272 kcal Electronic energy + Delta-G solvation = -31484.756639 eV Core-core repulsion = 27383.035295 eV Total energy + Delta-G solvation = -4101.721344 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.204 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -42.30193 -40.65330 -39.27040 -38.74923 -37.42672 -35.53803 -34.60603 -32.40508 -31.89901 -31.47901 -29.85949 -29.51239 -27.48009 -26.54095 -24.21189 -23.85969 -22.47292 -22.04583 -21.33060 -21.09238 -20.40975 -18.95692 -18.81498 -18.40329 -17.47894 -17.42817 -16.88741 -16.52440 -16.38924 -16.07314 -15.71363 -15.43114 -15.35763 -15.03978 -14.82608 -14.64371 -14.31490 -14.25343 -14.08255 -13.85709 -13.36733 -13.27628 -13.08886 -13.00841 -12.68532 -12.65059 -12.54693 -12.37157 -12.20682 -12.09347 -12.00302 -11.97275 -11.93364 -11.87099 -11.85789 -11.52015 -11.37747 -11.27953 -11.04760 -11.00484 -10.58886 -10.29038 -8.63109 -7.91909 -5.48544 1.00896 1.25730 1.47860 1.49240 1.56175 1.61012 2.24099 2.48668 3.24127 3.31611 3.52221 3.58200 3.62444 3.76550 3.79233 3.84350 3.87747 4.14759 4.15941 4.26326 4.35435 4.53691 4.53854 4.55972 4.60622 4.61727 4.67356 4.71500 4.74321 4.81394 4.82698 4.87779 4.94860 4.95738 5.03761 5.07114 5.09990 5.20425 5.22398 5.24782 5.29749 5.36166 5.42445 5.47960 5.55659 5.63105 5.65614 6.40069 6.40713 6.57683 7.11926 7.12521 7.76788 8.34539 9.14914 Molecular weight = 338.20amu Principal moments of inertia in cm(-1) A = 0.019142 B = 0.002856 C = 0.002639 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1462.404496 B = 9802.503147 C =10606.116184 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.514 3.486 3 O -0.585 6.585 4 N -0.712 5.712 5 C 0.163 3.837 6 H 0.117 0.883 7 C 0.466 3.534 8 O -0.527 6.527 9 O -0.334 6.334 10 C 0.108 3.892 11 C -0.134 4.134 12 C 0.148 3.852 13 N -0.608 5.608 14 C -0.274 4.274 15 H 0.063 0.937 16 C -0.038 4.038 17 N -0.932 5.932 18 Si 0.969 3.031 19 H -0.275 1.275 20 H -0.293 1.293 21 H -0.275 1.275 22 C 0.187 3.813 23 C -0.118 4.118 24 C -0.087 4.087 25 C -0.120 4.120 26 C -0.121 4.121 27 C -0.127 4.127 28 C -0.120 4.120 29 H 0.107 0.893 30 H 0.096 0.904 31 H 0.113 0.887 32 H 0.417 0.583 33 H 0.066 0.934 34 H 0.069 0.931 35 H 0.068 0.932 36 H 0.013 0.987 37 H 0.063 0.937 38 H 0.253 0.747 39 H 0.001 0.999 40 H 0.058 0.942 41 H 0.078 0.922 42 H 0.067 0.933 43 H 0.093 0.907 44 H 0.045 0.955 45 H 0.081 0.919 46 H 0.081 0.919 47 H 0.064 0.936 48 H 0.073 0.927 49 H 0.057 0.943 50 H 0.078 0.922 51 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.447 15.282 -10.237 23.389 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.303 3.697 3 O -0.465 6.465 4 N -0.367 5.367 5 C 0.056 3.944 6 H 0.134 0.866 7 C 0.309 3.691 8 O -0.417 6.417 9 O -0.250 6.250 10 C 0.054 3.946 11 C -0.173 4.173 12 C 0.022 3.978 13 N -0.332 5.332 14 C -0.404 4.404 15 H 0.081 0.919 16 C -0.235 4.235 17 N -0.576 5.576 18 Si 0.797 3.203 19 H -0.201 1.201 20 H -0.219 1.219 21 H -0.201 1.201 22 C 0.061 3.939 23 C -0.157 4.157 24 C -0.107 4.107 25 C -0.157 4.157 26 C -0.158 4.158 27 C -0.165 4.165 28 C -0.158 4.158 29 H 0.125 0.875 30 H 0.115 0.885 31 H 0.132 0.868 32 H 0.255 0.745 33 H 0.085 0.915 34 H 0.088 0.912 35 H 0.086 0.914 36 H 0.031 0.969 37 H 0.081 0.919 38 H 0.062 0.938 39 H 0.019 0.981 40 H 0.076 0.924 41 H 0.097 0.903 42 H 0.086 0.914 43 H 0.112 0.888 44 H 0.064 0.936 45 H 0.099 0.901 46 H 0.099 0.901 47 H 0.083 0.917 48 H 0.091 0.909 49 H 0.076 0.924 50 H 0.096 0.904 51 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -14.158 15.587 -10.154 23.377 hybrid contribution 0.646 -1.265 0.653 1.563 sum -13.512 14.322 -9.500 21.862 Atomic orbital electron populations 1.21943 0.87517 1.06463 1.06498 1.21603 0.92296 0.82037 0.73721 1.90723 1.71927 1.32609 1.51249 1.45897 1.05119 1.10656 1.75016 1.20601 0.82784 0.92048 0.98943 0.86574 1.23781 0.81530 0.89548 0.74236 1.90647 1.54994 1.47125 1.48899 1.86623 1.25329 1.38884 1.74117 1.22610 0.96930 0.81691 0.93388 1.22285 1.01422 0.99496 0.94111 1.20940 0.87712 0.92178 0.96961 1.44236 1.10600 1.76696 1.01664 1.19380 1.05730 1.09832 1.05468 0.91912 1.26053 1.03153 0.95087 0.99214 1.70104 1.38619 1.18505 1.30393 0.85334 0.79540 0.77126 0.78343 1.20096 1.21853 1.20064 1.20481 0.99333 0.91067 0.83051 1.22172 0.94040 0.99013 1.00447 1.22101 0.96697 0.99926 0.91932 1.22468 0.99224 0.95855 0.98165 1.22476 0.93757 1.01660 0.97904 1.22402 0.98383 0.98171 0.97541 1.22221 0.92652 0.99370 1.01526 0.87501 0.88532 0.86820 0.74476 0.91542 0.91180 0.91369 0.96939 0.91893 0.93798 0.98077 0.92401 0.90318 0.91407 0.88827 0.93605 0.90068 0.90082 0.91690 0.90874 0.92416 0.90376 0.91112 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.47 10.32 71.23 0.74 -0.74 16 2 C 0.51 9.35 7.89 87.66 0.69 10.05 16 3 O -0.59 -15.52 16.76 -3.02 -0.05 -15.57 16 4 N -0.71 -12.86 4.78 -446.13 -2.13 -14.99 16 5 C 0.16 3.54 2.10 44.24 0.09 3.64 16 6 H 0.12 2.69 7.66 -2.39 -0.02 2.67 16 7 C 0.47 12.48 5.44 71.23 0.39 12.87 16 8 O -0.53 -16.18 15.00 21.94 0.33 -15.85 16 9 O -0.33 -9.68 6.49 -51.40 -0.33 -10.01 16 10 C 0.11 3.69 2.41 30.62 0.07 3.77 16 11 C -0.13 -4.73 5.72 30.67 0.18 -4.55 16 12 C 0.15 6.27 6.52 86.36 0.56 6.83 16 13 N -0.61 -30.42 2.95 -699.11 -2.06 -32.49 16 14 C -0.27 -14.92 9.51 84.03 0.80 -14.12 16 15 H 0.06 3.34 7.85 -2.91 -0.02 3.32 16 16 C -0.04 -2.11 5.03 84.86 0.43 -1.68 16 17 N -0.93 -54.23 11.44 21.65 0.25 -53.98 16 18 Si 0.97 44.03 29.57 68.60 2.03 46.06 16 19 H -0.28 -12.15 7.11 99.48 0.71 -11.44 16 20 H -0.29 -13.31 7.11 99.48 0.71 -12.61 16 21 H -0.27 -12.08 7.11 99.48 0.71 -11.38 16 22 C 0.19 8.79 5.22 86.36 0.45 9.24 16 23 C -0.12 -4.30 5.60 30.67 0.17 -4.12 16 24 C -0.09 -1.68 2.90 -10.07 -0.03 -1.71 16 25 C -0.12 -2.22 6.01 31.67 0.19 -2.03 16 26 C -0.12 -2.15 6.91 31.88 0.22 -1.93 16 27 C -0.13 -2.58 6.67 31.67 0.21 -2.37 16 28 C -0.12 -2.37 5.69 31.32 0.18 -2.20 16 29 H 0.11 0.66 8.14 -2.39 -0.02 0.64 16 30 H 0.10 0.87 8.12 -2.39 -0.02 0.85 16 31 H 0.11 0.50 8.14 -2.39 -0.02 0.48 16 32 H 0.42 6.59 7.79 -92.71 -0.72 5.87 16 33 H 0.07 2.46 7.16 -2.39 -0.02 2.45 16 34 H 0.07 2.47 8.14 -2.39 -0.02 2.46 16 35 H 0.07 2.22 8.14 -2.38 -0.02 2.20 16 36 H 0.01 0.55 8.14 -2.39 -0.02 0.53 16 37 H 0.06 2.60 7.93 -2.39 -0.02 2.58 16 38 H 0.25 14.25 8.31 -92.71 -0.77 13.48 16 39 H 0.00 0.06 8.14 -2.39 -0.02 0.04 16 40 H 0.06 3.04 6.53 -2.39 -0.02 3.02 16 41 H 0.08 2.55 6.84 -2.39 -0.02 2.53 16 42 H 0.07 2.50 8.14 -2.38 -0.02 2.48 16 43 H 0.09 1.82 8.10 -2.39 -0.02 1.80 16 44 H 0.05 1.03 6.31 -2.39 -0.02 1.01 16 45 H 0.08 1.26 8.14 -2.38 -0.02 1.24 16 46 H 0.08 1.21 8.14 -2.39 -0.02 1.19 16 47 H 0.06 1.19 8.14 -2.38 -0.02 1.17 16 48 H 0.07 1.34 8.14 -2.39 -0.02 1.32 16 49 H 0.06 1.40 5.88 -2.39 -0.01 1.39 16 50 H 0.08 1.36 8.14 -2.39 -0.02 1.34 16 51 H 0.07 1.59 6.03 -2.38 -0.01 1.57 16 Total: -1.00 -67.27 394.46 3.57 -63.71 By element: Atomic # 1 Polarization: 21.98 SS G_CDS: 0.20 Total: 22.19 kcal Atomic # 6 Polarization: 5.59 SS G_CDS: 5.34 Total: 10.93 kcal Atomic # 7 Polarization: -97.51 SS G_CDS: -3.95 Total: -101.46 kcal Atomic # 8 Polarization: -41.37 SS G_CDS: -0.06 Total: -41.42 kcal Atomic # 14 Polarization: 44.03 SS G_CDS: 2.03 Total: 46.06 kcal Total: -67.27 3.57 -63.71 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000119348782.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -76.285 kcal (2) G-P(sol) polarization free energy of solvation -67.275 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -143.560 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.566 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.708 kcal (6) G-S(sol) free energy of system = (1) + (5) -139.993 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds