Wall clock time and date at job start Tue Mar 31 2020 21:00:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.45200 * 109.46851 * 2 1 4 4 C 1.34634 * 117.00053 * 179.97438 * 3 2 1 5 5 O 1.21508 * 120.00201 * 0.02562 * 4 3 2 6 6 N 1.34774 * 120.00172 * 179.72749 * 4 3 2 7 7 C 1.46926 * 120.62934 * 0.02562 * 6 4 3 8 8 C 1.53618 * 108.54475 * 126.36904 * 7 6 4 9 9 C 1.53042 * 109.24294 * 54.85375 * 8 7 6 10 10 C 1.53037 * 109.54125 * 298.51238 * 9 8 7 11 11 H 1.09002 * 109.49944 * 301.41857 * 10 9 8 12 12 C 1.50693 * 109.52952 * 181.33015 * 10 9 8 13 13 O 1.21294 * 119.99953 * 340.74116 * 12 10 9 14 14 N 1.34776 * 120.00633 * 160.73370 * 12 10 9 15 15 C 1.37089 * 120.00497 * 185.37676 * 14 12 10 16 16 H 1.08001 * 120.00435 * 219.26767 * 15 14 12 17 17 C 1.38952 * 119.99901 * 39.27453 * 15 14 12 18 18 N 1.31408 * 120.00321 * 21.15907 * 17 15 14 19 19 Si 1.86804 * 119.99827 * 201.16411 * 17 15 14 20 20 H 1.48498 * 109.47108 * 359.97438 * 19 17 15 21 21 H 1.48502 * 109.47251 * 119.99808 * 19 17 15 22 22 H 1.48510 * 109.46904 * 239.99635 * 19 17 15 23 23 C 1.46504 * 119.99623 * 5.37556 * 14 12 10 24 24 C 1.54261 * 110.03543 * 238.02469 * 23 14 12 25 25 C 1.54887 * 104.19477 * 217.10609 * 24 23 14 26 26 C 1.54889 * 102.74843 * 37.94043 * 25 24 23 27 27 C 1.53877 * 110.02975 * 120.85080 * 23 14 12 28 28 C 1.46928 * 120.63189 * 180.28126 * 6 4 3 29 29 H 1.08993 * 109.47487 * 59.99658 * 1 2 3 30 30 H 1.09006 * 109.46964 * 179.97438 * 1 2 3 31 31 H 1.09003 * 109.46635 * 299.98923 * 1 2 3 32 32 H 1.09003 * 109.46635 * 240.01077 * 2 1 3 33 33 H 1.08993 * 109.47487 * 120.00342 * 2 1 3 34 34 H 1.09007 * 109.58660 * 246.19824 * 7 6 4 35 35 H 1.09000 * 109.59089 * 6.62513 * 7 6 4 36 36 H 1.09003 * 109.63764 * 294.86796 * 8 7 6 37 37 H 1.08996 * 109.43485 * 174.72446 * 8 7 6 38 38 H 1.09007 * 109.46306 * 178.49135 * 9 8 7 39 39 H 1.09000 * 109.44694 * 58.52923 * 9 8 7 40 40 H 0.97000 * 120.00308 * 184.61144 * 18 17 15 41 41 H 1.09002 * 110.01705 * 359.46597 * 23 14 12 42 42 H 1.08998 * 110.48559 * 335.77852 * 24 23 14 43 43 H 1.08994 * 110.48852 * 98.42597 * 24 23 14 44 44 H 1.08994 * 110.76060 * 279.62816 * 25 24 23 45 45 H 1.09005 * 110.76011 * 156.24991 * 25 24 23 46 46 H 1.09007 * 110.48569 * 203.37803 * 26 25 24 47 47 H 1.08999 * 110.48853 * 80.74163 * 26 25 24 48 48 H 1.08995 * 110.03724 * 238.57183 * 27 23 14 49 49 H 1.08997 * 110.03493 * 0.02562 * 27 23 14 50 50 H 1.08999 * 109.58463 * 353.37539 * 28 6 4 51 51 H 1.08998 * 109.58664 * 113.65819 * 28 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0139 1.3690 0.0000 4 6 3.3487 1.5455 0.0005 5 8 4.0889 0.5819 0.0005 6 7 3.8638 2.7909 -0.0050 7 6 2.9816 3.9658 -0.0111 8 6 3.3781 4.8805 1.1576 9 6 4.8683 5.2134 1.0545 10 6 5.6885 3.9251 1.1520 11 1 5.4719 3.4264 2.0967 12 6 7.1570 4.2563 1.0832 13 8 7.5178 5.3209 0.6275 14 7 8.0695 3.3698 1.5281 15 6 9.3961 3.7132 1.5682 16 1 10.1498 2.9890 1.2967 17 6 9.7709 4.9931 1.9582 18 7 8.9482 5.7306 2.6696 19 14 11.4444 5.6653 1.4713 20 1 12.1761 4.6450 0.6783 21 1 11.2663 6.8931 0.6552 22 1 12.2214 5.9921 2.6940 23 6 7.6436 2.0391 1.9688 24 6 8.0741 1.8040 3.4314 25 6 8.4738 0.3082 3.4738 26 6 9.1701 0.1015 2.1058 27 6 8.3404 0.9567 1.1259 28 6 5.3181 2.9994 -0.0107 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5137 0.8901 32 1 1.8932 -0.5137 -0.8901 33 1 1.8934 -0.5138 0.8899 34 1 3.0942 4.5024 -0.9532 35 1 1.9463 3.6461 0.1083 36 1 3.1833 4.3730 2.1025 37 1 2.7958 5.8007 1.1117 38 1 5.1478 5.8841 1.8671 39 1 5.0665 5.6986 0.0988 40 1 9.1815 6.6472 2.8850 41 1 6.5616 1.9444 1.8775 42 1 8.9269 2.4340 3.6840 43 1 7.2425 1.9960 4.1094 44 1 7.5909 -0.3254 3.5574 45 1 9.1671 0.1166 4.2929 46 1 9.1385 -0.9490 1.8165 47 1 10.1999 0.4566 2.1444 48 1 7.5967 0.3361 0.6263 49 1 8.9958 1.4214 0.3893 50 1 5.8250 2.0419 0.1089 51 1 5.6181 3.4564 -0.9537 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000125285540.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:00:31 Heat of formation + Delta-G solvation = -115.120941 kcal Electronic energy + Delta-G solvation = -32103.734161 eV Core-core repulsion = 28003.091362 eV Total energy + Delta-G solvation = -4100.642799 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.204 amu Computer time = 1.31 seconds Orbital eigenvalues (eV) -40.62070 -39.24878 -37.77043 -36.62421 -36.06877 -33.38625 -32.69987 -31.78900 -31.57962 -30.55954 -27.99638 -26.79948 -25.50769 -25.20572 -23.38645 -22.97759 -21.47730 -20.18279 -20.02493 -19.64046 -18.69254 -17.97526 -16.91252 -16.66431 -16.31919 -15.89952 -14.95392 -14.84989 -14.68138 -14.47507 -14.36262 -14.15433 -13.89103 -13.50311 -13.20017 -12.95621 -12.88123 -12.84658 -12.62265 -12.54508 -12.10253 -11.98540 -11.75060 -11.41686 -11.23295 -11.00205 -10.82668 -10.76044 -10.68275 -10.59522 -10.57786 -10.50630 -10.42356 -10.38718 -10.29120 -10.17450 -10.11823 -9.98330 -9.65706 -8.73351 -8.61714 -7.97373 -7.05180 -6.06593 -3.75934 2.15599 2.90255 3.34686 3.45018 3.45848 3.85576 4.20199 4.40245 4.77026 4.78808 4.84602 5.06245 5.09097 5.10642 5.13625 5.23259 5.30556 5.33797 5.35987 5.47948 5.56805 5.57857 5.62561 5.70505 5.71865 5.75747 5.91501 5.99354 6.00863 6.08797 6.11891 6.15400 6.23120 6.27254 6.30289 6.37051 6.43285 6.49636 6.51368 6.58397 6.66019 6.68842 6.80057 6.90175 7.03620 7.23816 7.43391 7.70058 8.31486 8.35801 9.12076 9.24682 9.74486 10.35815 11.01581 Molecular weight = 338.20amu Principal moments of inertia in cm(-1) A = 0.013566 B = 0.004038 C = 0.003340 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2063.423891 B = 6932.735707 C = 8380.872148 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.081 3.919 3 O -0.372 6.372 4 C 0.648 3.352 5 O -0.573 6.573 6 N -0.589 5.589 7 C 0.112 3.888 8 C -0.135 4.135 9 C -0.096 4.096 10 C -0.115 4.115 11 H 0.079 0.921 12 C 0.483 3.517 13 O -0.536 6.536 14 N -0.445 5.445 15 C -0.335 4.335 16 H 0.079 0.921 17 C 0.072 3.928 18 N -0.831 5.831 19 Si 0.902 3.098 20 H -0.272 1.272 21 H -0.282 1.282 22 H -0.288 1.288 23 C 0.126 3.874 24 C -0.125 4.125 25 C -0.123 4.123 26 C -0.116 4.116 27 C -0.132 4.132 28 C 0.137 3.863 29 H 0.065 0.935 30 H 0.080 0.920 31 H 0.066 0.934 32 H 0.069 0.931 33 H 0.069 0.931 34 H 0.071 0.929 35 H 0.088 0.912 36 H 0.064 0.936 37 H 0.075 0.925 38 H 0.072 0.928 39 H 0.071 0.929 40 H 0.262 0.738 41 H 0.070 0.930 42 H 0.090 0.910 43 H 0.050 0.950 44 H 0.056 0.944 45 H 0.057 0.943 46 H 0.052 0.948 47 H 0.064 0.936 48 H 0.056 0.944 49 H 0.074 0.926 50 H 0.100 0.900 51 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.706 -8.790 -2.318 17.289 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.006 3.994 3 O -0.287 6.287 4 C 0.402 3.598 5 O -0.462 6.462 6 N -0.330 5.330 7 C -0.011 4.011 8 C -0.173 4.173 9 C -0.134 4.134 10 C -0.138 4.138 11 H 0.097 0.903 12 C 0.270 3.730 13 O -0.414 6.414 14 N -0.166 5.166 15 C -0.461 4.461 16 H 0.097 0.903 17 C -0.138 4.138 18 N -0.465 5.465 19 Si 0.729 3.271 20 H -0.197 1.197 21 H -0.208 1.208 22 H -0.215 1.215 23 C 0.021 3.979 24 C -0.164 4.164 25 C -0.161 4.161 26 C -0.154 4.154 27 C -0.170 4.170 28 C 0.016 3.984 29 H 0.084 0.916 30 H 0.098 0.902 31 H 0.085 0.915 32 H 0.087 0.913 33 H 0.088 0.912 34 H 0.089 0.911 35 H 0.106 0.894 36 H 0.083 0.917 37 H 0.094 0.906 38 H 0.091 0.909 39 H 0.090 0.910 40 H 0.072 0.928 41 H 0.088 0.912 42 H 0.109 0.891 43 H 0.068 0.932 44 H 0.075 0.925 45 H 0.076 0.924 46 H 0.071 0.929 47 H 0.083 0.917 48 H 0.075 0.925 49 H 0.093 0.907 50 H 0.118 0.882 51 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -14.343 -8.435 -2.424 16.815 hybrid contribution 0.730 0.312 -0.014 0.794 sum -13.613 -8.123 -2.439 16.039 Atomic orbital electron populations 1.21817 0.92768 1.02893 1.03420 1.22903 0.94588 0.79116 1.02747 1.86212 1.22432 1.32773 1.87264 1.17992 0.80987 0.84187 0.76589 1.90989 1.59650 1.39341 1.56185 1.47043 1.07704 1.02864 1.75350 1.21857 0.93812 0.86133 0.99280 1.22053 0.97772 0.99270 0.98189 1.21275 0.91856 0.96516 1.03758 1.21624 0.96528 0.96966 0.98669 0.90265 1.19409 0.85316 0.86133 0.82183 1.90506 1.80258 1.23946 1.46669 1.43453 1.06546 1.10506 1.56124 1.18899 0.81645 0.98817 1.46784 0.90285 1.25064 0.97707 0.97662 0.93371 1.69896 1.37549 1.08334 1.30736 0.86326 0.83260 0.79401 0.78125 1.19678 1.20824 1.21503 1.21794 0.97223 0.85626 0.93294 1.22643 1.02013 0.95346 0.96365 1.22438 0.99350 0.97188 0.97079 1.22253 0.99577 0.98382 0.95201 1.22471 0.99180 0.96799 0.98581 1.21756 0.76516 1.01274 0.98860 0.91580 0.90166 0.91518 0.91308 0.91228 0.91115 0.89371 0.91681 0.90626 0.90905 0.91020 0.92821 0.91205 0.89130 0.93166 0.92491 0.92377 0.92875 0.91675 0.92513 0.90681 0.88171 0.90617 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.04 10.29 37.16 0.38 -0.65 16 2 C 0.08 0.83 6.19 37.16 0.23 1.06 16 3 O -0.37 -4.84 8.86 -40.31 -0.36 -5.20 16 4 C 0.65 10.24 8.43 54.05 0.46 10.69 16 5 O -0.57 -10.57 15.54 -19.28 -0.30 -10.87 16 6 N -0.59 -8.91 2.97 -178.32 -0.53 -9.44 16 7 C 0.11 1.36 6.47 -3.49 -0.02 1.34 16 8 C -0.13 -1.72 6.10 -26.39 -0.16 -1.88 16 9 C -0.10 -1.65 4.60 -26.69 -0.12 -1.77 16 10 C -0.11 -2.20 1.80 -91.67 -0.16 -2.37 16 11 H 0.08 1.54 6.94 -51.93 -0.36 1.18 16 12 C 0.48 11.80 6.04 -10.99 -0.07 11.74 16 13 O -0.54 -15.18 13.77 5.55 0.08 -15.10 16 14 N -0.45 -10.76 2.48 -106.54 -0.26 -11.03 16 15 C -0.33 -8.90 7.42 -14.94 -0.11 -9.01 16 16 H 0.08 2.06 7.20 -52.49 -0.38 1.68 16 17 C 0.07 1.98 4.29 -17.47 -0.07 1.91 16 18 N -0.83 -24.05 11.67 55.50 0.65 -23.40 16 19 Si 0.90 21.84 29.61 -169.99 -5.03 16.80 16 20 H -0.27 -6.41 7.11 56.52 0.40 -6.00 16 21 H -0.28 -7.06 7.11 56.52 0.40 -6.66 16 22 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 23 C 0.13 2.54 2.57 -66.81 -0.17 2.37 16 24 C -0.13 -2.42 6.41 -25.08 -0.16 -2.58 16 25 C -0.12 -1.95 6.91 -24.74 -0.17 -2.12 16 26 C -0.12 -1.89 6.83 -25.07 -0.17 -2.06 16 27 C -0.13 -2.42 6.18 -25.61 -0.16 -2.58 16 28 C 0.14 2.38 5.40 -3.73 -0.02 2.35 16 29 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 30 H 0.08 0.40 8.14 -51.93 -0.42 -0.03 16 31 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 32 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 33 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 34 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 35 H 0.09 0.94 6.93 -51.93 -0.36 0.58 16 36 H 0.06 0.85 8.14 -51.93 -0.42 0.42 16 37 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 38 H 0.07 1.39 8.14 -51.92 -0.42 0.97 16 39 H 0.07 1.28 7.95 -51.93 -0.41 0.87 16 40 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 41 H 0.07 1.37 4.53 -51.93 -0.24 1.13 16 42 H 0.09 2.03 7.04 -51.93 -0.37 1.66 16 43 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 44 H 0.06 0.84 8.14 -51.93 -0.42 0.41 16 45 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 46 H 0.05 0.75 8.14 -51.92 -0.42 0.33 16 47 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 48 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 49 H 0.07 1.50 6.98 -51.93 -0.36 1.14 16 50 H 0.10 1.86 5.38 -51.93 -0.28 1.58 16 51 H 0.08 1.32 8.14 -51.93 -0.42 0.90 16 LS Contribution 393.66 15.07 5.93 5.93 Total: -1.00 -32.62 393.66 -8.99 -41.60 By element: Atomic # 1 Polarization: 12.92 SS G_CDS: -8.65 Total: 4.27 kcal Atomic # 6 Polarization: 6.94 SS G_CDS: -0.51 Total: 6.43 kcal Atomic # 7 Polarization: -43.72 SS G_CDS: -0.15 Total: -43.87 kcal Atomic # 8 Polarization: -30.59 SS G_CDS: -0.58 Total: -31.17 kcal Atomic # 14 Polarization: 21.84 SS G_CDS: -5.03 Total: 16.80 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -32.62 -8.99 -41.60 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000125285540.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.519 kcal (2) G-P(sol) polarization free energy of solvation -32.615 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.135 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.986 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.601 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.121 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.31 seconds