Wall clock time and date at job start Tue Mar 31 2020 21:00:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.45199 * 109.47386 * 2 1 4 4 C 1.34629 * 117.00374 * 180.02562 * 3 2 1 5 5 O 1.21516 * 119.99742 * 359.97438 * 4 3 2 6 6 N 1.34773 * 120.00336 * 179.97438 * 4 3 2 7 7 C 1.46932 * 120.62990 * 5.39232 * 6 4 3 8 8 C 1.53189 * 108.77463 * 233.58582 * 7 6 4 9 9 C 1.53042 * 109.31427 * 305.36306 * 8 7 6 10 10 C 1.53044 * 109.53465 * 61.36625 * 9 8 7 11 11 H 1.08993 * 109.52735 * 58.60705 * 10 9 8 12 12 C 1.50701 * 109.49484 * 178.68470 * 10 9 8 13 13 O 1.21294 * 119.99959 * 10.42969 * 12 10 9 14 14 N 1.34782 * 119.99953 * 190.43401 * 12 10 9 15 15 C 1.37094 * 119.99779 * 5.18630 * 14 12 10 16 16 H 1.07995 * 120.00278 * 230.88446 * 15 14 12 17 17 C 1.38953 * 119.99796 * 50.88934 * 15 14 12 18 18 N 1.31417 * 119.99731 * 197.03295 * 17 15 14 19 19 Si 1.86797 * 120.00288 * 17.03769 * 17 15 14 20 20 H 1.48504 * 109.46873 * 85.13133 * 19 17 15 21 21 H 1.48505 * 109.47006 * 325.13155 * 19 17 15 22 22 H 1.48493 * 109.47174 * 205.13141 * 19 17 15 23 23 C 1.46497 * 119.99805 * 185.18686 * 14 12 10 24 24 C 1.54259 * 110.03370 * 237.16634 * 23 14 12 25 25 C 1.54891 * 104.19746 * 217.10738 * 24 23 14 26 26 C 1.54895 * 102.74952 * 37.94487 * 25 24 23 27 27 C 1.53876 * 110.02918 * 119.99912 * 23 14 12 28 28 C 1.46929 * 120.63510 * 185.36818 * 6 4 3 29 29 H 1.09008 * 109.47053 * 300.00179 * 1 2 3 30 30 H 1.08996 * 109.47081 * 59.99946 * 1 2 3 31 31 H 1.08996 * 109.47504 * 180.02562 * 1 2 3 32 32 H 1.09001 * 109.46672 * 239.99815 * 2 1 3 33 33 H 1.08996 * 109.47081 * 120.00054 * 2 1 3 34 34 H 1.08992 * 109.58318 * 353.37521 * 7 6 4 35 35 H 1.09003 * 109.58459 * 113.79980 * 7 6 4 36 36 H 1.09003 * 109.49535 * 65.31559 * 8 7 6 37 37 H 1.08996 * 109.49764 * 185.38031 * 8 7 6 38 38 H 1.08997 * 109.46073 * 301.34876 * 9 8 7 39 39 H 1.09005 * 109.46252 * 181.38459 * 9 8 7 40 40 H 0.96996 * 120.00066 * 185.00684 * 18 17 15 41 41 H 1.09000 * 110.01749 * 358.60998 * 23 14 12 42 42 H 1.08999 * 110.48990 * 335.78672 * 24 23 14 43 43 H 1.09001 * 110.49015 * 98.43296 * 24 23 14 44 44 H 1.08993 * 110.75895 * 279.62735 * 25 24 23 45 45 H 1.09001 * 110.91582 * 156.32687 * 25 24 23 46 46 H 1.08992 * 110.48698 * 203.38369 * 26 25 24 47 47 H 1.08995 * 110.49018 * 80.72902 * 26 25 24 48 48 H 1.08998 * 110.03301 * 238.56822 * 27 23 14 49 49 H 1.09001 * 110.03307 * 0.02562 * 27 23 14 50 50 H 1.09008 * 109.58183 * 6.62840 * 28 6 4 51 51 H 1.09000 * 109.58814 * 246.20495 * 28 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0141 1.3689 0.0000 4 6 3.3488 1.5454 -0.0005 5 8 4.0890 0.5817 -0.0005 6 7 3.8639 2.7907 -0.0011 7 6 2.9870 3.9637 0.1177 8 6 3.2777 4.9165 -1.0461 9 6 4.7716 5.2482 -1.0676 10 6 5.5777 3.9649 -1.2811 11 1 5.2763 3.4970 -2.2181 12 6 7.0468 4.2969 -1.3344 13 8 7.4294 5.4063 -1.0277 14 7 7.9354 3.3610 -1.7231 15 6 7.4956 2.1423 -2.1711 16 1 7.9055 1.2339 -1.7549 17 6 6.5225 2.0758 -3.1607 18 7 5.8615 0.9572 -3.3581 19 14 6.1539 3.5762 -4.2106 20 1 7.1037 3.6277 -5.3510 21 1 6.3007 4.8040 -3.3882 22 1 4.7644 3.4896 -4.7272 23 6 9.3713 3.6462 -1.6667 24 6 10.0015 3.4638 -3.0628 25 6 11.3931 2.8481 -2.7739 26 6 11.1031 1.8855 -1.5955 27 6 10.0717 2.6428 -0.7337 28 6 5.3132 3.0014 -0.1200 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5138 -0.8899 31 1 -0.3634 -1.0276 0.0005 32 1 1.8933 -0.5139 -0.8900 33 1 1.8933 -0.5138 0.8899 34 1 1.9451 3.6463 0.0786 35 1 3.1814 4.4710 1.0627 36 1 2.9973 4.4397 -1.9853 37 1 2.7028 5.8335 -0.9177 38 1 5.0564 5.7023 -0.1186 39 1 4.9771 5.9455 -1.8799 40 1 5.2346 0.8879 -4.0950 41 1 9.5360 4.6636 -1.3119 42 1 9.4011 2.7832 -3.6665 43 1 10.1068 4.4267 -3.5627 44 1 12.1029 3.6200 -2.4765 45 1 11.7627 2.2984 -3.6396 46 1 12.0121 1.6968 -1.0246 47 1 10.6805 0.9501 -1.9621 48 1 10.5770 3.1733 0.0733 49 1 9.3433 1.9434 -0.3233 50 1 5.8059 2.0490 -0.3159 51 1 5.6972 3.4302 0.8056 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000125285741.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:00:35 Heat of formation + Delta-G solvation = -110.007700 kcal Electronic energy + Delta-G solvation = -32498.002928 eV Core-core repulsion = 28397.581856 eV Total energy + Delta-G solvation = -4100.421072 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.204 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -40.33304 -39.48579 -37.79560 -36.63873 -35.75363 -34.22680 -32.62880 -31.77594 -31.34529 -30.73839 -28.07139 -27.26239 -25.26985 -24.65984 -23.71567 -22.80121 -21.40344 -20.15198 -20.08352 -19.38858 -18.88136 -17.83929 -16.89981 -16.42591 -16.30258 -15.82506 -15.55504 -14.79575 -14.62542 -14.46933 -14.23563 -13.96350 -13.83974 -13.40741 -13.34796 -13.03832 -12.78093 -12.68888 -12.65285 -12.58409 -12.44997 -11.78561 -11.69240 -11.50552 -11.41883 -11.11202 -10.98322 -10.83302 -10.68776 -10.59011 -10.55602 -10.47811 -10.31365 -10.22082 -10.08889 -10.05696 -9.90312 -9.81925 -9.63828 -8.99987 -8.61786 -8.24392 -7.54648 -6.43952 -4.17334 2.49423 3.05379 3.17838 3.27566 3.36111 3.74382 4.10734 4.17201 4.40153 4.89586 5.03656 5.06543 5.15494 5.21686 5.24258 5.26296 5.28645 5.39001 5.49253 5.58807 5.62582 5.70985 5.82610 5.84643 5.88511 5.96007 6.00315 6.07125 6.16003 6.17003 6.18041 6.20842 6.23617 6.31728 6.38247 6.43320 6.43674 6.46283 6.60983 6.62012 6.77186 6.84358 6.91157 6.93353 6.97685 7.08686 7.71286 7.79951 7.82137 8.52368 8.80122 8.98045 9.29932 9.72310 10.63892 Molecular weight = 338.20amu Principal moments of inertia in cm(-1) A = 0.014351 B = 0.004332 C = 0.004087 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1950.561531 B = 6461.311214 C = 6849.120597 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.082 3.918 3 O -0.377 6.377 4 C 0.648 3.352 5 O -0.549 6.549 6 N -0.591 5.591 7 C 0.113 3.887 8 C -0.137 4.137 9 C -0.104 4.104 10 C -0.108 4.108 11 H 0.094 0.906 12 C 0.501 3.499 13 O -0.594 6.594 14 N -0.465 5.465 15 C -0.341 4.341 16 H 0.102 0.898 17 C 0.079 3.921 18 N -0.841 5.841 19 Si 0.841 3.159 20 H -0.278 1.278 21 H -0.250 1.250 22 H -0.282 1.282 23 C 0.131 3.869 24 C -0.131 4.131 25 C -0.120 4.120 26 C -0.117 4.117 27 C -0.126 4.126 28 C 0.148 3.852 29 H 0.063 0.937 30 H 0.064 0.936 31 H 0.078 0.922 32 H 0.071 0.929 33 H 0.067 0.933 34 H 0.087 0.913 35 H 0.068 0.932 36 H 0.064 0.936 37 H 0.075 0.925 38 H 0.071 0.929 39 H 0.065 0.935 40 H 0.273 0.727 41 H 0.082 0.918 42 H 0.087 0.913 43 H 0.052 0.948 44 H 0.057 0.943 45 H 0.059 0.941 46 H 0.053 0.947 47 H 0.068 0.932 48 H 0.053 0.947 49 H 0.076 0.924 50 H 0.126 0.874 51 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.500 1.866 4.794 7.531 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.007 3.993 3 O -0.293 6.293 4 C 0.401 3.599 5 O -0.435 6.435 6 N -0.332 5.332 7 C -0.010 4.010 8 C -0.175 4.175 9 C -0.142 4.142 10 C -0.130 4.130 11 H 0.112 0.888 12 C 0.290 3.710 13 O -0.478 6.478 14 N -0.185 5.185 15 C -0.468 4.468 16 H 0.120 0.880 17 C -0.130 4.130 18 N -0.474 5.474 19 Si 0.666 3.334 20 H -0.204 1.204 21 H -0.174 1.174 22 H -0.208 1.208 23 C 0.027 3.973 24 C -0.169 4.169 25 C -0.158 4.158 26 C -0.155 4.155 27 C -0.165 4.165 28 C 0.027 3.973 29 H 0.082 0.918 30 H 0.084 0.916 31 H 0.097 0.903 32 H 0.089 0.911 33 H 0.085 0.915 34 H 0.106 0.894 35 H 0.086 0.914 36 H 0.083 0.917 37 H 0.093 0.907 38 H 0.090 0.910 39 H 0.084 0.916 40 H 0.083 0.917 41 H 0.100 0.900 42 H 0.105 0.895 43 H 0.070 0.930 44 H 0.076 0.924 45 H 0.078 0.922 46 H 0.072 0.928 47 H 0.087 0.913 48 H 0.072 0.928 49 H 0.094 0.906 50 H 0.144 0.856 51 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -5.311 1.903 4.898 7.471 hybrid contribution -0.305 0.533 -1.060 1.225 sum -5.616 2.436 3.839 7.225 Atomic orbital electron populations 1.21802 0.93096 1.02678 1.03161 1.22850 0.94240 0.79422 1.02827 1.86163 1.22939 1.32545 1.87604 1.17935 0.80801 0.84280 0.76867 1.91053 1.59281 1.38935 1.54257 1.46880 1.08053 1.02685 1.75560 1.21682 0.94505 0.86412 0.98386 1.21972 0.97309 0.99208 0.99002 1.21416 0.92989 0.96762 1.03073 1.21638 0.93733 0.96418 1.01197 0.88802 1.20195 0.87850 0.84993 0.77980 1.90517 1.80721 1.22815 1.53775 1.43831 1.03270 1.14147 1.57281 1.18806 1.22696 0.84041 1.21237 0.88016 1.25547 0.95128 0.96066 0.96218 1.69772 1.22898 1.26310 1.28450 0.87558 0.78134 0.85749 0.81950 1.20406 1.17432 1.20773 1.21650 0.82601 0.98409 0.94593 1.22670 0.95739 1.00515 0.97976 1.22399 0.96990 0.98295 0.98083 1.22266 0.97866 0.98908 0.96416 1.22392 0.97993 0.98526 0.97545 1.21501 0.76906 1.02777 0.96118 0.91801 0.91648 0.90338 0.91067 0.91502 0.89443 0.91395 0.91727 0.90653 0.90996 0.91648 0.91661 0.89975 0.89466 0.92951 0.92380 0.92202 0.92803 0.91310 0.92783 0.90566 0.85551 0.92015 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.45 10.29 37.16 0.38 -1.07 16 2 C 0.08 1.12 6.19 37.16 0.23 1.35 16 3 O -0.38 -6.31 8.86 -40.29 -0.36 -6.67 16 4 C 0.65 13.02 8.42 54.05 0.46 13.47 16 5 O -0.55 -12.99 15.57 -19.28 -0.30 -13.29 16 6 N -0.59 -11.09 2.97 -178.56 -0.53 -11.62 16 7 C 0.11 1.66 6.46 -3.71 -0.02 1.63 16 8 C -0.14 -2.05 6.08 -26.61 -0.16 -2.22 16 9 C -0.10 -1.92 4.46 -26.69 -0.12 -2.04 16 10 C -0.11 -2.33 0.95 -91.65 -0.09 -2.42 16 11 H 0.09 2.23 2.89 -51.93 -0.15 2.08 16 12 C 0.50 11.79 4.45 -10.98 -0.05 11.74 16 13 O -0.59 -14.84 15.37 5.55 0.09 -14.75 16 14 N -0.46 -10.74 1.93 -106.55 -0.21 -10.95 16 15 C -0.34 -8.46 6.01 -14.93 -0.09 -8.55 16 16 H 0.10 2.73 7.40 -52.49 -0.39 2.34 16 17 C 0.08 2.02 4.23 -17.46 -0.07 1.95 16 18 N -0.84 -22.90 13.95 55.50 0.77 -22.13 16 19 Si 0.84 20.27 24.89 -169.99 -4.23 16.03 16 20 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 21 H -0.25 -6.10 4.68 56.52 0.26 -5.83 16 22 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 23 C 0.13 2.69 3.29 -66.82 -0.22 2.47 16 24 C -0.13 -2.49 6.41 -25.07 -0.16 -2.65 16 25 C -0.12 -1.86 6.91 -24.73 -0.17 -2.03 16 26 C -0.12 -1.85 6.83 -25.06 -0.17 -2.02 16 27 C -0.13 -2.26 6.25 -25.61 -0.16 -2.42 16 28 C 0.15 3.07 5.52 -3.71 -0.02 3.05 16 29 H 0.06 0.57 8.14 -51.92 -0.42 0.14 16 30 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 31 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 32 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 33 H 0.07 0.90 8.14 -51.93 -0.42 0.47 16 34 H 0.09 1.15 6.92 -51.93 -0.36 0.79 16 35 H 0.07 0.87 8.14 -51.93 -0.42 0.44 16 36 H 0.06 1.06 8.14 -51.93 -0.42 0.63 16 37 H 0.07 0.90 8.14 -51.93 -0.42 0.47 16 38 H 0.07 1.27 8.03 -51.93 -0.42 0.86 16 39 H 0.06 1.26 7.84 -51.93 -0.41 0.85 16 40 H 0.27 7.14 8.32 -40.82 -0.34 6.80 16 41 H 0.08 1.74 6.95 -51.93 -0.36 1.38 16 42 H 0.09 1.87 7.01 -51.93 -0.36 1.50 16 43 H 0.05 0.96 8.14 -51.93 -0.42 0.53 16 44 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 45 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 46 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 47 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 48 H 0.05 0.88 8.14 -51.93 -0.42 0.45 16 49 H 0.08 1.50 6.98 -51.93 -0.36 1.13 16 50 H 0.13 3.06 5.65 -51.92 -0.29 2.77 16 51 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 LS Contribution 385.29 15.07 5.81 5.81 Total: -1.00 -30.42 385.29 -8.12 -38.54 By element: Atomic # 1 Polarization: 17.49 SS G_CDS: -8.71 Total: 8.78 kcal Atomic # 6 Polarization: 10.70 SS G_CDS: -0.44 Total: 10.26 kcal Atomic # 7 Polarization: -44.73 SS G_CDS: 0.04 Total: -44.69 kcal Atomic # 8 Polarization: -34.15 SS G_CDS: -0.57 Total: -34.72 kcal Atomic # 14 Polarization: 20.27 SS G_CDS: -4.23 Total: 16.03 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -30.42 -8.12 -38.54 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000125285741.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -71.468 kcal (2) G-P(sol) polarization free energy of solvation -30.424 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.892 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.115 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.540 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.008 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds