Wall clock time and date at job start Tue Mar 31 2020 21:00:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.45199 * 109.47386 * 2 1 4 4 C 1.34629 * 117.00374 * 180.02562 * 3 2 1 5 5 O 1.21516 * 119.99742 * 359.97438 * 4 3 2 6 6 N 1.34773 * 120.00336 * 179.97438 * 4 3 2 7 7 C 1.46932 * 120.62990 * 5.39232 * 6 4 3 8 8 C 1.53189 * 108.77463 * 233.58582 * 7 6 4 9 9 C 1.53042 * 109.31427 * 305.36306 * 8 7 6 10 10 C 1.53044 * 109.53465 * 61.36625 * 9 8 7 11 11 H 1.08993 * 109.52735 * 58.60705 * 10 9 8 12 12 C 1.50701 * 109.49484 * 178.68470 * 10 9 8 13 13 O 1.21294 * 119.99959 * 10.42969 * 12 10 9 14 14 N 1.34782 * 119.99953 * 190.43401 * 12 10 9 15 15 C 1.37094 * 119.99779 * 5.18630 * 14 12 10 16 16 H 1.07995 * 120.00278 * 230.88446 * 15 14 12 17 17 C 1.38953 * 119.99796 * 50.88934 * 15 14 12 18 18 N 1.31417 * 119.99731 * 197.03295 * 17 15 14 19 19 Si 1.86797 * 120.00288 * 17.03769 * 17 15 14 20 20 H 1.48504 * 109.46873 * 85.13133 * 19 17 15 21 21 H 1.48505 * 109.47006 * 325.13155 * 19 17 15 22 22 H 1.48493 * 109.47174 * 205.13141 * 19 17 15 23 23 C 1.46497 * 119.99805 * 185.18686 * 14 12 10 24 24 C 1.54259 * 110.03370 * 237.16634 * 23 14 12 25 25 C 1.54891 * 104.19746 * 217.10738 * 24 23 14 26 26 C 1.54895 * 102.74952 * 37.94487 * 25 24 23 27 27 C 1.53876 * 110.02918 * 119.99912 * 23 14 12 28 28 C 1.46929 * 120.63510 * 185.36818 * 6 4 3 29 29 H 1.09008 * 109.47053 * 300.00179 * 1 2 3 30 30 H 1.08996 * 109.47081 * 59.99946 * 1 2 3 31 31 H 1.08996 * 109.47504 * 180.02562 * 1 2 3 32 32 H 1.09001 * 109.46672 * 239.99815 * 2 1 3 33 33 H 1.08996 * 109.47081 * 120.00054 * 2 1 3 34 34 H 1.08992 * 109.58318 * 353.37521 * 7 6 4 35 35 H 1.09003 * 109.58459 * 113.79980 * 7 6 4 36 36 H 1.09003 * 109.49535 * 65.31559 * 8 7 6 37 37 H 1.08996 * 109.49764 * 185.38031 * 8 7 6 38 38 H 1.08997 * 109.46073 * 301.34876 * 9 8 7 39 39 H 1.09005 * 109.46252 * 181.38459 * 9 8 7 40 40 H 0.96996 * 120.00066 * 185.00684 * 18 17 15 41 41 H 1.09000 * 110.01749 * 358.60998 * 23 14 12 42 42 H 1.08999 * 110.48990 * 335.78672 * 24 23 14 43 43 H 1.09001 * 110.49015 * 98.43296 * 24 23 14 44 44 H 1.08993 * 110.75895 * 279.62735 * 25 24 23 45 45 H 1.09001 * 110.91582 * 156.32687 * 25 24 23 46 46 H 1.08992 * 110.48698 * 203.38369 * 26 25 24 47 47 H 1.08995 * 110.49018 * 80.72902 * 26 25 24 48 48 H 1.08998 * 110.03301 * 238.56822 * 27 23 14 49 49 H 1.09001 * 110.03307 * 0.02562 * 27 23 14 50 50 H 1.09008 * 109.58183 * 6.62840 * 28 6 4 51 51 H 1.09000 * 109.58814 * 246.20495 * 28 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0141 1.3689 0.0000 4 6 3.3488 1.5454 -0.0005 5 8 4.0890 0.5817 -0.0005 6 7 3.8639 2.7907 -0.0011 7 6 2.9870 3.9637 0.1177 8 6 3.2777 4.9165 -1.0461 9 6 4.7716 5.2482 -1.0676 10 6 5.5777 3.9649 -1.2811 11 1 5.2763 3.4970 -2.2181 12 6 7.0468 4.2969 -1.3344 13 8 7.4294 5.4063 -1.0277 14 7 7.9354 3.3610 -1.7231 15 6 7.4956 2.1423 -2.1711 16 1 7.9055 1.2339 -1.7549 17 6 6.5225 2.0758 -3.1607 18 7 5.8615 0.9572 -3.3581 19 14 6.1539 3.5762 -4.2106 20 1 7.1037 3.6277 -5.3510 21 1 6.3007 4.8040 -3.3882 22 1 4.7644 3.4896 -4.7272 23 6 9.3713 3.6462 -1.6667 24 6 10.0015 3.4638 -3.0628 25 6 11.3931 2.8481 -2.7739 26 6 11.1031 1.8855 -1.5955 27 6 10.0717 2.6428 -0.7337 28 6 5.3132 3.0014 -0.1200 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5138 -0.8899 31 1 -0.3634 -1.0276 0.0005 32 1 1.8933 -0.5139 -0.8900 33 1 1.8933 -0.5138 0.8899 34 1 1.9451 3.6463 0.0786 35 1 3.1814 4.4710 1.0627 36 1 2.9973 4.4397 -1.9853 37 1 2.7028 5.8335 -0.9177 38 1 5.0564 5.7023 -0.1186 39 1 4.9771 5.9455 -1.8799 40 1 5.2346 0.8879 -4.0950 41 1 9.5360 4.6636 -1.3119 42 1 9.4011 2.7832 -3.6665 43 1 10.1068 4.4267 -3.5627 44 1 12.1029 3.6200 -2.4765 45 1 11.7627 2.2984 -3.6396 46 1 12.0121 1.6968 -1.0246 47 1 10.6805 0.9501 -1.9621 48 1 10.5770 3.1733 0.0733 49 1 9.3433 1.9434 -0.3233 50 1 5.8059 2.0490 -0.3159 51 1 5.6972 3.4302 0.8056 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000125285741.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:00:34 Heat of formation + Delta-G solvation = -127.946181 kcal Electronic energy + Delta-G solvation = -32498.780799 eV Core-core repulsion = 28397.581856 eV Total energy + Delta-G solvation = -4101.198943 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.204 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -41.92218 -41.16550 -39.26467 -38.21514 -37.29343 -36.08783 -34.13726 -33.70691 -32.47121 -32.14399 -29.52425 -28.83543 -26.71825 -26.60163 -25.22911 -23.93420 -22.83341 -21.69970 -21.44516 -21.10411 -20.57154 -19.39710 -18.61296 -17.94233 -17.73530 -17.53118 -17.30868 -16.47736 -16.14216 -15.88069 -15.76838 -15.52842 -15.32785 -15.12301 -14.83042 -14.59427 -14.34316 -14.14866 -14.07907 -13.97965 -13.60686 -13.37028 -13.18443 -12.83752 -12.81598 -12.67617 -12.55567 -12.49741 -12.27336 -12.01038 -11.99182 -11.91741 -11.85716 -11.82794 -11.51040 -11.48615 -11.43695 -11.42155 -11.35645 -10.97057 -10.47752 -9.78392 -9.44925 -8.49248 -6.21794 1.02295 1.11755 1.19572 1.27740 1.77618 1.88225 2.10389 2.61383 2.88812 2.93554 3.74256 3.78678 3.82823 3.84569 3.90445 4.04076 4.05957 4.12874 4.15219 4.18401 4.33206 4.38347 4.52050 4.58023 4.60744 4.67635 4.71363 4.72967 4.75677 4.75824 4.87772 4.89119 4.90351 4.95291 4.98229 5.02084 5.12302 5.12853 5.19300 5.23127 5.33213 5.37072 5.40901 5.43749 5.47224 5.57884 5.70672 5.91623 6.33048 6.47748 6.96189 7.27347 7.36131 7.79010 8.62116 Molecular weight = 338.20amu Principal moments of inertia in cm(-1) A = 0.014351 B = 0.004332 C = 0.004087 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1950.561531 B = 6461.311214 C = 6849.120597 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.071 3.929 3 O -0.367 6.367 4 C 0.643 3.357 5 O -0.596 6.596 6 N -0.592 5.592 7 C 0.109 3.891 8 C -0.129 4.129 9 C -0.102 4.102 10 C -0.109 4.109 11 H 0.072 0.928 12 C 0.493 3.507 13 O -0.608 6.608 14 N -0.470 5.470 15 C -0.319 4.319 16 H 0.074 0.926 17 C 0.054 3.946 18 N -0.877 5.877 19 Si 0.886 3.114 20 H -0.281 1.281 21 H -0.254 1.254 22 H -0.279 1.279 23 C 0.120 3.880 24 C -0.132 4.132 25 C -0.108 4.108 26 C -0.112 4.112 27 C -0.122 4.122 28 C 0.159 3.841 29 H 0.076 0.924 30 H 0.066 0.934 31 H 0.103 0.897 32 H 0.052 0.948 33 H 0.067 0.933 34 H 0.108 0.892 35 H 0.096 0.904 36 H 0.048 0.952 37 H 0.119 0.881 38 H 0.081 0.919 39 H 0.055 0.945 40 H 0.273 0.727 41 H 0.077 0.923 42 H 0.057 0.943 43 H 0.057 0.943 44 H 0.083 0.917 45 H 0.074 0.926 46 H 0.086 0.914 47 H 0.050 0.950 48 H 0.075 0.925 49 H 0.050 0.950 50 H 0.084 0.916 51 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.182 3.542 5.581 9.051 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.003 4.003 3 O -0.281 6.281 4 C 0.398 3.602 5 O -0.486 6.486 6 N -0.332 5.332 7 C -0.012 4.012 8 C -0.167 4.167 9 C -0.140 4.140 10 C -0.131 4.131 11 H 0.089 0.911 12 C 0.283 3.717 13 O -0.494 6.494 14 N -0.191 5.191 15 C -0.446 4.446 16 H 0.091 0.909 17 C -0.151 4.151 18 N -0.513 5.513 19 Si 0.711 3.289 20 H -0.207 1.207 21 H -0.179 1.179 22 H -0.205 1.205 23 C 0.017 3.983 24 C -0.170 4.170 25 C -0.146 4.146 26 C -0.149 4.149 27 C -0.161 4.161 28 C 0.036 3.964 29 H 0.095 0.905 30 H 0.086 0.914 31 H 0.122 0.878 32 H 0.070 0.930 33 H 0.086 0.914 34 H 0.126 0.874 35 H 0.114 0.886 36 H 0.067 0.933 37 H 0.137 0.863 38 H 0.100 0.900 39 H 0.074 0.926 40 H 0.083 0.917 41 H 0.095 0.905 42 H 0.076 0.924 43 H 0.076 0.924 44 H 0.102 0.898 45 H 0.093 0.907 46 H 0.104 0.896 47 H 0.069 0.931 48 H 0.094 0.906 49 H 0.068 0.932 50 H 0.103 0.897 51 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -6.015 3.602 5.684 9.025 hybrid contribution -0.070 -0.005 -1.230 1.232 sum -6.085 3.597 4.454 8.355 Atomic orbital electron populations 1.21810 0.89264 1.04568 1.03876 1.23213 0.97051 0.78010 1.02020 1.86185 1.20618 1.34279 1.87046 1.18175 0.81613 0.84165 0.76293 1.91020 1.60615 1.40625 1.56367 1.46967 1.07717 1.03664 1.74837 1.22032 0.94708 0.84844 0.99573 1.21974 0.95207 1.01059 0.98432 1.21438 0.94831 0.94607 1.03114 1.21652 0.92959 0.98215 1.00293 0.91052 1.20598 0.88822 0.84747 0.77525 1.90490 1.81242 1.23181 1.54505 1.43948 1.04670 1.13441 1.57002 1.18424 1.21985 0.83839 1.20392 0.90861 1.25833 0.95020 0.97263 0.96988 1.69856 1.24151 1.27962 1.29283 0.86860 0.77878 0.83559 0.80562 1.20748 1.17858 1.20467 1.21917 0.81239 0.98809 0.96304 1.22647 0.97541 1.00381 0.96477 1.22384 0.95118 0.98666 0.98429 1.22242 0.98293 0.97861 0.96542 1.22355 0.97967 0.97761 0.97979 1.21156 0.78365 1.00462 0.96376 0.90466 0.91446 0.87844 0.92980 0.91428 0.87411 0.88560 0.93286 0.86304 0.90006 0.92638 0.91728 0.90512 0.92438 0.92429 0.89795 0.90714 0.89563 0.93072 0.90607 0.93161 0.89723 0.90671 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.36 10.29 71.98 0.74 -1.62 16 2 C 0.07 1.95 6.19 71.98 0.45 2.40 16 3 O -0.37 -12.05 8.86 -55.38 -0.49 -12.54 16 4 C 0.64 26.24 8.42 129.79 1.09 27.34 16 5 O -0.60 -29.60 15.57 19.79 0.31 -29.29 16 6 N -0.59 -21.99 2.97 -949.26 -2.82 -24.82 16 7 C 0.11 2.90 6.46 86.36 0.56 3.46 16 8 C -0.13 -3.51 6.08 30.67 0.19 -3.33 16 9 C -0.10 -3.59 4.46 30.62 0.14 -3.46 16 10 C -0.11 -4.75 0.95 -11.46 -0.01 -4.77 16 11 H 0.07 3.45 2.89 -2.39 -0.01 3.44 16 12 C 0.49 23.52 4.45 87.66 0.39 23.91 16 13 O -0.61 -30.29 15.37 -3.07 -0.05 -30.34 16 14 N -0.47 -22.33 1.93 -609.39 -1.18 -23.51 16 15 C -0.32 -16.58 6.01 84.04 0.51 -16.07 16 16 H 0.07 4.22 7.40 -2.91 -0.02 4.19 16 17 C 0.05 2.89 4.23 84.93 0.36 3.25 16 18 N -0.88 -49.96 13.95 21.66 0.30 -49.66 16 19 Si 0.89 43.03 24.89 68.60 1.71 44.73 16 20 H -0.28 -13.62 7.11 99.48 0.71 -12.91 16 21 H -0.25 -12.40 4.68 99.48 0.47 -11.93 16 22 H -0.28 -13.28 7.11 99.48 0.71 -12.58 16 23 C 0.12 4.96 3.29 45.71 0.15 5.11 16 24 C -0.13 -4.98 6.41 31.67 0.20 -4.78 16 25 C -0.11 -3.13 6.91 31.89 0.22 -2.91 16 26 C -0.11 -3.39 6.83 31.67 0.22 -3.17 16 27 C -0.12 -4.36 6.25 31.32 0.20 -4.17 16 28 C 0.16 6.72 5.52 86.36 0.48 7.19 16 29 H 0.08 1.14 8.14 -2.38 -0.02 1.12 16 30 H 0.07 1.15 8.14 -2.39 -0.02 1.13 16 31 H 0.10 1.29 8.14 -2.39 -0.02 1.27 16 32 H 0.05 1.61 8.14 -2.39 -0.02 1.59 16 33 H 0.07 1.82 8.14 -2.39 -0.02 1.80 16 34 H 0.11 2.47 6.92 -2.39 -0.02 2.45 16 35 H 0.10 2.07 8.14 -2.39 -0.02 2.05 16 36 H 0.05 1.51 8.14 -2.39 -0.02 1.49 16 37 H 0.12 2.28 8.14 -2.39 -0.02 2.26 16 38 H 0.08 2.71 8.03 -2.39 -0.02 2.69 16 39 H 0.05 2.06 7.84 -2.38 -0.02 2.04 16 40 H 0.27 14.86 8.32 -92.71 -0.77 14.09 16 41 H 0.08 3.24 6.95 -2.39 -0.02 3.22 16 42 H 0.06 2.51 7.01 -2.39 -0.02 2.49 16 43 H 0.06 2.07 8.14 -2.39 -0.02 2.05 16 44 H 0.08 2.04 8.14 -2.39 -0.02 2.02 16 45 H 0.07 1.97 8.14 -2.39 -0.02 1.95 16 46 H 0.09 2.09 8.14 -2.39 -0.02 2.07 16 47 H 0.05 1.72 8.14 -2.39 -0.02 1.70 16 48 H 0.08 2.35 8.14 -2.39 -0.02 2.33 16 49 H 0.05 2.04 6.98 -2.39 -0.02 2.03 16 50 H 0.08 4.33 5.65 -2.38 -0.01 4.32 16 51 H 0.08 2.92 8.14 -2.39 -0.02 2.90 16 Total: -1.00 -70.09 385.29 4.32 -65.77 By element: Atomic # 1 Polarization: 30.60 SS G_CDS: 0.67 Total: 31.27 kcal Atomic # 6 Polarization: 22.51 SS G_CDS: 5.87 Total: 28.38 kcal Atomic # 7 Polarization: -94.29 SS G_CDS: -3.70 Total: -97.99 kcal Atomic # 8 Polarization: -71.94 SS G_CDS: -0.23 Total: -72.17 kcal Atomic # 14 Polarization: 43.03 SS G_CDS: 1.71 Total: 44.73 kcal Total: -70.09 4.32 -65.77 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000125285741.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.172 kcal (2) G-P(sol) polarization free energy of solvation -70.092 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -132.265 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.319 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.774 kcal (6) G-S(sol) free energy of system = (1) + (5) -127.946 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds