Wall clock time and date at job start Tue Mar 31 2020 22:11:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31627 * 1 3 3 Si 1.86794 * 119.99770 * 2 1 4 4 H 1.48504 * 109.47167 * 239.99699 * 3 2 1 5 5 H 1.48497 * 109.47420 * 359.97438 * 3 2 1 6 6 H 1.48499 * 109.47203 * 120.00013 * 3 2 1 7 7 C 1.38804 * 119.99593 * 179.97438 * 2 1 3 8 8 H 1.08009 * 119.99746 * 162.56113 * 7 2 1 9 9 N 1.36934 * 120.00824 * 342.82852 * 7 2 1 10 10 C 1.46960 * 120.60057 * 151.28959 * 9 7 2 11 11 C 1.53806 * 108.39912 * 124.76092 * 10 9 7 12 12 N 1.46963 * 108.58078 * 49.64281 * 11 10 9 13 13 C 1.34776 * 120.59877 * 124.62257 * 12 11 10 14 14 O 1.21279 * 120.00093 * 180.02562 * 13 12 11 15 15 C 1.50703 * 119.99763 * 0.02562 * 13 12 11 16 16 N 1.46500 * 109.47076 * 179.97438 * 15 13 12 17 17 C 1.34777 * 119.99906 * 180.02562 * 16 15 13 18 18 O 1.21587 * 119.99981 * 359.97438 * 17 16 15 19 19 N 1.34773 * 119.99795 * 179.97438 * 17 16 15 20 20 C 1.46503 * 119.99736 * 179.97438 * 19 17 16 21 21 C 1.53002 * 109.47515 * 275.00315 * 20 19 17 22 22 C 1.52998 * 109.47092 * 180.02562 * 21 20 19 23 23 C 1.52996 * 109.47317 * 60.00078 * 22 21 20 24 24 C 1.52998 * 109.47045 * 299.99637 * 23 22 21 25 25 C 1.53001 * 109.46801 * 155.00102 * 20 19 17 26 26 C 1.46965 * 118.80800 * 304.64671 * 12 11 10 27 27 C 1.46968 * 120.58904 * 331.57781 * 9 7 2 28 28 H 0.97003 * 120.00012 * 0.02562 * 1 2 3 29 29 H 1.08998 * 109.61464 * 244.55099 * 10 9 7 30 30 H 1.09004 * 109.60410 * 5.05435 * 10 9 7 31 31 H 1.08997 * 109.74276 * 289.85313 * 11 10 9 32 32 H 1.09004 * 109.67587 * 169.39005 * 11 10 9 33 33 H 1.09001 * 109.47137 * 300.00288 * 15 13 12 34 34 H 1.09007 * 109.47022 * 59.99996 * 15 13 12 35 35 H 0.97002 * 119.99793 * 0.02562 * 16 15 13 36 36 H 0.96995 * 120.00305 * 0.02562 * 19 17 16 37 37 H 1.09002 * 109.46934 * 35.00281 * 20 19 17 38 38 H 1.09007 * 109.46673 * 300.00270 * 21 20 19 39 39 H 1.09000 * 109.47215 * 59.99817 * 21 20 19 40 40 H 1.09002 * 109.46869 * 299.99668 * 22 21 20 41 41 H 1.08998 * 109.46723 * 179.97438 * 22 21 20 42 42 H 1.09005 * 109.46670 * 180.02562 * 23 22 21 43 43 H 1.08995 * 109.47156 * 59.99812 * 23 22 21 44 44 H 1.09002 * 109.47249 * 300.00475 * 24 23 22 45 45 H 1.09000 * 109.47284 * 180.02562 * 24 23 22 46 46 H 1.08998 * 109.47408 * 300.00008 * 25 20 19 47 47 H 1.09002 * 109.47230 * 60.00361 * 25 20 19 48 48 H 1.08996 * 109.61476 * 295.47839 * 26 12 11 49 49 H 1.09010 * 109.75120 * 175.04934 * 26 12 11 50 50 H 1.09003 * 109.61422 * 354.94072 * 27 9 7 51 51 H 1.08999 * 109.61487 * 115.28316 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1040 1.6964 -1.2125 5 1 1.2852 2.7464 -0.0006 6 1 3.1039 1.6964 1.2125 7 6 2.0102 -1.2021 0.0005 8 1 3.0531 -1.2238 -0.2798 9 7 1.3714 -2.3615 0.3511 10 6 1.8064 -3.6519 -0.2014 11 6 2.1101 -4.6033 0.9683 12 7 0.9731 -4.5787 1.8992 13 6 0.3436 -5.7196 2.2436 14 8 -0.5938 -5.6867 3.0123 15 6 0.8047 -7.0362 1.6734 16 7 -0.0343 -8.1163 2.1983 17 6 0.1952 -9.3905 1.8239 18 8 1.0983 -9.6435 1.0501 19 7 -0.5764 -10.3843 2.3072 20 6 -0.3272 -11.7693 1.8997 21 6 -1.0478 -12.0501 0.5795 22 6 -0.7881 -13.4967 0.1544 23 6 -1.3114 -14.4471 1.2332 24 6 -0.5908 -14.1663 2.5533 25 6 -0.8501 -12.7200 2.9784 26 6 0.5344 -3.2876 2.4474 27 6 0.2343 -2.3368 1.2819 28 1 -0.4850 0.8401 -0.0004 29 1 1.0134 -4.0707 -0.8208 30 1 2.7052 -3.5085 -0.8012 31 1 3.0125 -4.2759 1.4845 32 1 2.2517 -5.6159 0.5906 33 1 0.7252 -7.0092 0.5866 34 1 1.8423 -7.2118 1.9575 35 1 -0.7550 -7.9144 2.8153 36 1 -1.2970 -10.1824 2.9242 37 1 0.7440 -11.9223 1.7687 38 1 -2.1190 -11.8969 0.7106 39 1 -0.6753 -11.3727 -0.1889 40 1 0.2831 -13.6501 0.0235 41 1 -1.3018 -13.6968 -0.7858 42 1 -1.1259 -15.4777 0.9304 43 1 -2.3825 -14.2936 1.3641 44 1 0.4804 -14.3198 2.4224 45 1 -0.9633 -14.8437 3.3218 46 1 -0.3368 -12.5201 3.9189 47 1 -1.9213 -12.5670 3.1095 48 1 1.3246 -2.8665 3.0689 49 1 -0.3658 -3.4283 3.0458 50 1 0.0946 -1.3248 1.6621 51 1 -0.6688 -2.6613 0.7650 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000152655997.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:11:04 Heat of formation + Delta-G solvation = -51.726267 kcal Electronic energy + Delta-G solvation = -29587.161566 eV Core-core repulsion = 25521.560518 eV Total energy + Delta-G solvation = -4065.601048 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 1.26 seconds Orbital eigenvalues (eV) -40.50668 -39.66526 -38.38839 -36.93061 -34.44861 -34.31366 -33.99492 -31.24951 -31.13138 -30.70522 -29.70440 -27.75130 -26.39310 -23.69530 -23.08734 -22.92850 -22.51355 -20.91105 -20.62118 -20.28713 -19.05841 -18.36899 -16.94328 -16.90810 -16.09408 -15.87969 -15.71943 -15.34721 -14.94335 -14.80985 -14.61893 -14.42670 -14.33519 -13.95791 -13.71911 -13.59934 -13.32536 -13.20724 -13.05748 -12.80351 -12.73628 -12.55502 -12.16305 -11.78558 -11.61246 -11.51878 -11.26850 -11.04424 -10.84518 -10.81800 -10.79206 -10.62429 -10.57970 -10.31467 -10.24815 -10.01480 -9.92848 -9.55181 -9.39678 -8.97122 -8.63526 -8.35124 -6.75902 -5.88153 -3.33711 2.44660 2.76544 3.12368 3.33567 3.34585 3.40023 3.41208 4.10169 4.31122 4.38723 4.41210 4.58514 4.60551 4.77929 4.88569 5.07557 5.12279 5.13120 5.18998 5.25683 5.29000 5.34391 5.38746 5.41006 5.64504 5.67214 5.69508 5.70391 5.72343 5.74661 5.85069 5.87067 5.99570 6.02638 6.06529 6.23078 6.29062 6.34517 6.36830 6.44670 6.64305 6.76419 6.83122 7.18565 7.48884 7.68939 7.74570 7.91194 8.32714 8.33727 8.50180 9.08526 9.71120 10.27596 11.19415 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.034624 B = 0.001824 C = 0.001791 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 808.496267 B =15344.288026 C =15627.823885 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.004 3.996 3 Si 0.906 3.094 4 H -0.282 1.282 5 H -0.290 1.290 6 H -0.283 1.283 7 C -0.259 4.259 8 H 0.068 0.932 9 N -0.591 5.591 10 C 0.130 3.870 11 C 0.084 3.916 12 N -0.589 5.589 13 C 0.504 3.496 14 O -0.557 6.557 15 C 0.122 3.878 16 N -0.733 5.733 17 C 0.708 3.292 18 O -0.592 6.592 19 N -0.744 5.744 20 C 0.165 3.835 21 C -0.131 4.131 22 C -0.117 4.117 23 C -0.122 4.122 24 C -0.115 4.115 25 C -0.127 4.127 26 C 0.087 3.913 27 C 0.158 3.842 28 H 0.256 0.744 29 H 0.025 0.975 30 H 0.069 0.931 31 H 0.071 0.929 32 H 0.076 0.924 33 H 0.097 0.903 34 H 0.094 0.906 35 H 0.407 0.593 36 H 0.396 0.604 37 H 0.088 0.912 38 H 0.062 0.938 39 H 0.069 0.931 40 H 0.064 0.936 41 H 0.064 0.936 42 H 0.062 0.938 43 H 0.062 0.938 44 H 0.065 0.935 45 H 0.066 0.934 46 H 0.069 0.931 47 H 0.067 0.933 48 H 0.062 0.938 49 H 0.081 0.919 50 H 0.101 0.899 51 H 0.024 0.976 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.892 -25.727 5.599 26.397 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.545 5.545 2 C -0.195 4.195 3 Si 0.735 3.265 4 H -0.208 1.208 5 H -0.216 1.216 6 H -0.209 1.209 7 C -0.388 4.388 8 H 0.086 0.914 9 N -0.314 5.314 10 C 0.003 3.997 11 C -0.041 4.041 12 N -0.321 5.321 13 C 0.291 3.709 14 O -0.436 6.436 15 C -0.006 4.006 16 N -0.392 5.392 17 C 0.407 3.593 18 O -0.471 6.471 19 N -0.398 5.398 20 C 0.060 3.940 21 C -0.170 4.170 22 C -0.155 4.155 23 C -0.159 4.159 24 C -0.153 4.153 25 C -0.165 4.165 26 C -0.036 4.036 27 C 0.032 3.968 28 H 0.066 0.934 29 H 0.043 0.957 30 H 0.088 0.912 31 H 0.089 0.911 32 H 0.094 0.906 33 H 0.114 0.886 34 H 0.112 0.888 35 H 0.244 0.756 36 H 0.230 0.770 37 H 0.106 0.894 38 H 0.081 0.919 39 H 0.088 0.912 40 H 0.083 0.917 41 H 0.082 0.918 42 H 0.081 0.919 43 H 0.081 0.919 44 H 0.084 0.916 45 H 0.084 0.916 46 H 0.087 0.913 47 H 0.086 0.914 48 H 0.081 0.919 49 H 0.100 0.900 50 H 0.118 0.882 51 H 0.042 0.958 Dipole moment (debyes) X Y Z Total from point charges -1.636 -25.720 5.263 26.304 hybrid contribution -0.259 1.202 0.445 1.308 sum -1.895 -24.518 5.708 25.245 Atomic orbital electron populations 1.70012 1.05335 1.25926 1.53207 1.25097 0.95304 0.98629 1.00460 0.86325 0.78893 0.83068 0.78192 1.20801 1.21596 1.20919 1.19152 0.92740 0.84627 1.42323 0.91431 1.44010 1.36510 1.01635 1.49196 1.21369 0.98647 0.87328 0.92370 1.22574 0.88317 1.00696 0.92466 1.48014 1.32349 1.06758 1.44946 1.20388 0.83118 0.85645 0.81777 1.90630 1.29192 1.86653 1.37170 1.20920 0.95439 0.84304 0.99910 1.44790 1.37976 1.04541 1.51846 1.15819 0.82185 0.80388 0.80887 1.90924 1.34023 1.82978 1.39138 1.45173 1.36799 1.06299 1.51558 1.20821 1.00945 0.78717 0.93522 1.21963 1.00557 0.96864 0.97635 1.21497 1.01568 0.94184 0.98269 1.21581 1.00118 0.99226 0.95023 1.21469 1.01092 0.95403 0.97370 1.21812 1.01654 0.94856 0.98184 1.22557 0.99958 0.82497 0.98592 1.21199 0.89083 0.98606 0.87962 0.93361 0.95707 0.91230 0.91094 0.90617 0.88555 0.88774 0.75627 0.77048 0.89384 0.91930 0.91179 0.91676 0.91760 0.91902 0.91930 0.91605 0.91557 0.91274 0.91397 0.91925 0.90036 0.88152 0.95805 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.42 11.20 55.49 0.62 -24.80 16 2 C 0.00 0.11 4.91 -17.43 -0.09 0.03 16 3 Si 0.91 21.01 29.59 -169.99 -5.03 15.98 16 4 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 5 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 6 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 7 C -0.26 -6.77 9.57 -15.06 -0.14 -6.92 16 8 H 0.07 1.72 7.89 -52.48 -0.41 1.30 16 9 N -0.59 -14.07 2.96 -171.77 -0.51 -14.58 16 10 C 0.13 2.51 6.70 -3.37 -0.02 2.49 16 11 C 0.08 1.32 6.52 -3.37 -0.02 1.30 16 12 N -0.59 -10.18 2.95 -172.21 -0.51 -10.69 16 13 C 0.50 8.23 7.77 -10.98 -0.09 8.14 16 14 O -0.56 -10.33 15.08 5.56 0.08 -10.25 16 15 C 0.12 1.65 4.50 -5.19 -0.02 1.63 16 16 N -0.73 -9.24 5.53 -66.41 -0.37 -9.61 16 17 C 0.71 9.17 8.53 -86.92 -0.74 8.43 16 18 O -0.59 -9.68 16.01 5.29 0.08 -9.60 16 19 N -0.74 -6.98 5.08 -58.67 -0.30 -7.28 16 20 C 0.17 1.41 2.46 -67.93 -0.17 1.24 16 21 C -0.13 -1.11 5.50 -26.73 -0.15 -1.26 16 22 C -0.12 -0.80 5.92 -26.73 -0.16 -0.96 16 23 C -0.12 -0.67 5.92 -26.73 -0.16 -0.83 16 24 C -0.12 -0.62 5.92 -26.75 -0.16 -0.78 16 25 C -0.13 -0.76 5.39 -26.75 -0.14 -0.91 16 26 C 0.09 1.69 6.59 -3.60 -0.02 1.66 16 27 C 0.16 3.66 5.51 -3.59 -0.02 3.64 16 28 H 0.26 7.03 8.31 -40.82 -0.34 6.69 16 29 H 0.03 0.50 8.14 -51.93 -0.42 0.07 16 30 H 0.07 1.27 7.93 -51.93 -0.41 0.86 16 31 H 0.07 1.09 8.14 -51.93 -0.42 0.66 16 32 H 0.08 0.95 5.91 -51.93 -0.31 0.65 16 33 H 0.10 1.30 7.72 -51.93 -0.40 0.90 16 34 H 0.09 1.19 7.91 -51.92 -0.41 0.78 16 35 H 0.41 4.83 7.45 -40.82 -0.30 4.53 16 36 H 0.40 2.79 8.62 -40.82 -0.35 2.44 16 37 H 0.09 0.93 7.58 -51.93 -0.39 0.53 16 38 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 39 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 40 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 41 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 42 H 0.06 0.31 8.14 -51.93 -0.42 -0.12 16 43 H 0.06 0.34 8.14 -51.93 -0.42 -0.09 16 44 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 45 H 0.07 0.30 8.14 -51.93 -0.42 -0.12 16 46 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 47 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 48 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 49 H 0.08 1.57 7.00 -51.92 -0.36 1.21 16 50 H 0.10 2.58 6.00 -51.93 -0.31 2.27 16 51 H 0.02 0.60 8.14 -51.93 -0.42 0.17 16 LS Contribution 397.72 15.07 5.99 5.99 Total: -1.00 -31.94 397.72 -10.75 -42.69 By element: Atomic # 1 Polarization: 13.96 SS G_CDS: -8.72 Total: 5.23 kcal Atomic # 6 Polarization: 19.01 SS G_CDS: -2.10 Total: 16.91 kcal Atomic # 7 Polarization: -65.90 SS G_CDS: -1.06 Total: -66.96 kcal Atomic # 8 Polarization: -20.02 SS G_CDS: 0.17 Total: -19.85 kcal Atomic # 14 Polarization: 21.01 SS G_CDS: -5.03 Total: 15.98 kcal Total LS contribution 5.99 Total: 5.99 kcal Total: -31.94 -10.75 -42.69 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000152655997.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.032 kcal (2) G-P(sol) polarization free energy of solvation -31.943 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.975 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.751 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.695 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.726 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.26 seconds