Wall clock time and date at job start Tue Mar 31 2020 22:11:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31627 * 1 3 3 Si 1.86794 * 119.99770 * 2 1 4 4 H 1.48504 * 109.47167 * 239.99699 * 3 2 1 5 5 H 1.48497 * 109.47420 * 359.97438 * 3 2 1 6 6 H 1.48499 * 109.47203 * 120.00013 * 3 2 1 7 7 C 1.38804 * 119.99593 * 179.97438 * 2 1 3 8 8 H 1.08009 * 119.99746 * 162.56113 * 7 2 1 9 9 N 1.36934 * 120.00824 * 342.82852 * 7 2 1 10 10 C 1.46960 * 120.60057 * 151.28959 * 9 7 2 11 11 C 1.53806 * 108.39912 * 124.76092 * 10 9 7 12 12 N 1.46963 * 108.58078 * 49.64281 * 11 10 9 13 13 C 1.34776 * 120.59877 * 124.62257 * 12 11 10 14 14 O 1.21279 * 120.00093 * 180.02562 * 13 12 11 15 15 C 1.50703 * 119.99763 * 0.02562 * 13 12 11 16 16 N 1.46500 * 109.47076 * 179.97438 * 15 13 12 17 17 C 1.34777 * 119.99906 * 180.02562 * 16 15 13 18 18 O 1.21587 * 119.99981 * 359.97438 * 17 16 15 19 19 N 1.34773 * 119.99795 * 179.97438 * 17 16 15 20 20 C 1.46503 * 119.99736 * 179.97438 * 19 17 16 21 21 C 1.53002 * 109.47515 * 275.00315 * 20 19 17 22 22 C 1.52998 * 109.47092 * 180.02562 * 21 20 19 23 23 C 1.52996 * 109.47317 * 60.00078 * 22 21 20 24 24 C 1.52998 * 109.47045 * 299.99637 * 23 22 21 25 25 C 1.53001 * 109.46801 * 155.00102 * 20 19 17 26 26 C 1.46965 * 118.80800 * 304.64671 * 12 11 10 27 27 C 1.46968 * 120.58904 * 331.57781 * 9 7 2 28 28 H 0.97003 * 120.00012 * 0.02562 * 1 2 3 29 29 H 1.08998 * 109.61464 * 244.55099 * 10 9 7 30 30 H 1.09004 * 109.60410 * 5.05435 * 10 9 7 31 31 H 1.08997 * 109.74276 * 289.85313 * 11 10 9 32 32 H 1.09004 * 109.67587 * 169.39005 * 11 10 9 33 33 H 1.09001 * 109.47137 * 300.00288 * 15 13 12 34 34 H 1.09007 * 109.47022 * 59.99996 * 15 13 12 35 35 H 0.97002 * 119.99793 * 0.02562 * 16 15 13 36 36 H 0.96995 * 120.00305 * 0.02562 * 19 17 16 37 37 H 1.09002 * 109.46934 * 35.00281 * 20 19 17 38 38 H 1.09007 * 109.46673 * 300.00270 * 21 20 19 39 39 H 1.09000 * 109.47215 * 59.99817 * 21 20 19 40 40 H 1.09002 * 109.46869 * 299.99668 * 22 21 20 41 41 H 1.08998 * 109.46723 * 179.97438 * 22 21 20 42 42 H 1.09005 * 109.46670 * 180.02562 * 23 22 21 43 43 H 1.08995 * 109.47156 * 59.99812 * 23 22 21 44 44 H 1.09002 * 109.47249 * 300.00475 * 24 23 22 45 45 H 1.09000 * 109.47284 * 180.02562 * 24 23 22 46 46 H 1.08998 * 109.47408 * 300.00008 * 25 20 19 47 47 H 1.09002 * 109.47230 * 60.00361 * 25 20 19 48 48 H 1.08996 * 109.61476 * 295.47839 * 26 12 11 49 49 H 1.09010 * 109.75120 * 175.04934 * 26 12 11 50 50 H 1.09003 * 109.61422 * 354.94072 * 27 9 7 51 51 H 1.08999 * 109.61487 * 115.28316 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1040 1.6964 -1.2125 5 1 1.2852 2.7464 -0.0006 6 1 3.1039 1.6964 1.2125 7 6 2.0102 -1.2021 0.0005 8 1 3.0531 -1.2238 -0.2798 9 7 1.3714 -2.3615 0.3511 10 6 1.8064 -3.6519 -0.2014 11 6 2.1101 -4.6033 0.9683 12 7 0.9731 -4.5787 1.8992 13 6 0.3436 -5.7196 2.2436 14 8 -0.5938 -5.6867 3.0123 15 6 0.8047 -7.0362 1.6734 16 7 -0.0343 -8.1163 2.1983 17 6 0.1952 -9.3905 1.8239 18 8 1.0983 -9.6435 1.0501 19 7 -0.5764 -10.3843 2.3072 20 6 -0.3272 -11.7693 1.8997 21 6 -1.0478 -12.0501 0.5795 22 6 -0.7881 -13.4967 0.1544 23 6 -1.3114 -14.4471 1.2332 24 6 -0.5908 -14.1663 2.5533 25 6 -0.8501 -12.7200 2.9784 26 6 0.5344 -3.2876 2.4474 27 6 0.2343 -2.3368 1.2819 28 1 -0.4850 0.8401 -0.0004 29 1 1.0134 -4.0707 -0.8208 30 1 2.7052 -3.5085 -0.8012 31 1 3.0125 -4.2759 1.4845 32 1 2.2517 -5.6159 0.5906 33 1 0.7252 -7.0092 0.5866 34 1 1.8423 -7.2118 1.9575 35 1 -0.7550 -7.9144 2.8153 36 1 -1.2970 -10.1824 2.9242 37 1 0.7440 -11.9223 1.7687 38 1 -2.1190 -11.8969 0.7106 39 1 -0.6753 -11.3727 -0.1889 40 1 0.2831 -13.6501 0.0235 41 1 -1.3018 -13.6968 -0.7858 42 1 -1.1259 -15.4777 0.9304 43 1 -2.3825 -14.2936 1.3641 44 1 0.4804 -14.3198 2.4224 45 1 -0.9633 -14.8437 3.3218 46 1 -0.3368 -12.5201 3.9189 47 1 -1.9213 -12.5670 3.1095 48 1 1.3246 -2.8665 3.0689 49 1 -0.3658 -3.4283 3.0458 50 1 0.0946 -1.3248 1.6621 51 1 -0.6688 -2.6613 0.7650 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000152655997.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:11:03 Heat of formation + Delta-G solvation = -73.110096 kcal Electronic energy + Delta-G solvation = -29588.088839 eV Core-core repulsion = 25521.560518 eV Total energy + Delta-G solvation = -4066.528321 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -41.58566 -40.85890 -39.15542 -38.47975 -35.70537 -35.51621 -35.15169 -33.09712 -32.21811 -31.66466 -30.55760 -29.11287 -27.85497 -25.41787 -24.43213 -23.62049 -23.32582 -22.23602 -21.78709 -20.91172 -20.37724 -19.56963 -18.51680 -17.88981 -17.55225 -17.06386 -16.83883 -16.66252 -16.24694 -16.00299 -15.51096 -15.45424 -15.30508 -15.20646 -15.06154 -15.00086 -14.79734 -14.36740 -14.15893 -13.76816 -13.58346 -13.38876 -13.31821 -13.12225 -13.09289 -12.61924 -12.50109 -12.32464 -12.21550 -12.04168 -12.02632 -11.87580 -11.71066 -11.65097 -11.36923 -11.26909 -11.11348 -10.97081 -10.60094 -10.40628 -9.91185 -9.80717 -8.66976 -7.88787 -5.37357 1.42183 1.46789 1.49869 1.51521 1.57971 2.07898 2.11451 2.51390 3.23653 3.26440 3.33813 3.59515 3.74894 3.85301 4.06165 4.20698 4.23156 4.25166 4.28641 4.31637 4.34151 4.39742 4.48475 4.51883 4.58282 4.59825 4.65507 4.72854 4.78200 4.83022 4.91902 5.05045 5.09857 5.14897 5.22639 5.23742 5.24494 5.27132 5.35711 5.41493 5.43595 5.52236 5.59471 5.62147 5.66293 5.94971 6.35301 6.38832 6.96308 7.03747 7.09750 7.52412 7.78985 8.31853 9.16419 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.034624 B = 0.001824 C = 0.001791 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 808.496267 B =15344.288026 C =15627.823885 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.937 5.937 2 C -0.050 4.050 3 Si 0.969 3.031 4 H -0.275 1.275 5 H -0.298 1.298 6 H -0.276 1.276 7 C -0.263 4.263 8 H 0.075 0.925 9 N -0.609 5.609 10 C 0.124 3.876 11 C 0.095 3.905 12 N -0.595 5.595 13 C 0.508 3.492 14 O -0.579 6.579 15 C 0.130 3.870 16 N -0.731 5.731 17 C 0.705 3.295 18 O -0.628 6.628 19 N -0.730 5.730 20 C 0.164 3.836 21 C -0.127 4.127 22 C -0.116 4.116 23 C -0.119 4.119 24 C -0.115 4.115 25 C -0.119 4.119 26 C 0.104 3.896 27 C 0.168 3.832 28 H 0.250 0.750 29 H 0.016 0.984 30 H 0.081 0.919 31 H 0.082 0.918 32 H 0.114 0.886 33 H 0.101 0.899 34 H 0.111 0.889 35 H 0.411 0.589 36 H 0.409 0.591 37 H 0.066 0.934 38 H 0.070 0.930 39 H 0.040 0.960 40 H 0.057 0.943 41 H 0.067 0.933 42 H 0.072 0.928 43 H 0.068 0.932 44 H 0.060 0.940 45 H 0.081 0.919 46 H 0.073 0.927 47 H 0.080 0.920 48 H 0.069 0.931 49 H 0.080 0.920 50 H 0.070 0.930 51 H -0.007 1.007 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.103 -27.840 6.447 28.598 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.246 4.246 3 Si 0.797 3.203 4 H -0.200 1.200 5 H -0.225 1.225 6 H -0.202 1.202 7 C -0.393 4.393 8 H 0.093 0.907 9 N -0.332 5.332 10 C -0.002 4.002 11 C -0.028 4.028 12 N -0.326 5.326 13 C 0.296 3.704 14 O -0.460 6.460 15 C 0.002 3.998 16 N -0.389 5.389 17 C 0.405 3.595 18 O -0.509 6.509 19 N -0.385 5.385 20 C 0.059 3.941 21 C -0.166 4.166 22 C -0.154 4.154 23 C -0.156 4.156 24 C -0.153 4.153 25 C -0.157 4.157 26 C -0.020 4.020 27 C 0.041 3.959 28 H 0.059 0.941 29 H 0.034 0.966 30 H 0.099 0.901 31 H 0.100 0.900 32 H 0.132 0.868 33 H 0.119 0.881 34 H 0.129 0.871 35 H 0.249 0.751 36 H 0.245 0.755 37 H 0.084 0.916 38 H 0.089 0.911 39 H 0.058 0.942 40 H 0.076 0.924 41 H 0.086 0.914 42 H 0.091 0.909 43 H 0.087 0.913 44 H 0.079 0.921 45 H 0.100 0.900 46 H 0.091 0.909 47 H 0.099 0.901 48 H 0.087 0.913 49 H 0.098 0.902 50 H 0.089 0.911 51 H 0.011 0.989 Dipole moment (debyes) X Y Z Total from point charges -0.846 -27.886 6.128 28.564 hybrid contribution -0.529 1.782 0.138 1.864 sum -1.375 -26.104 6.266 26.881 Atomic orbital electron populations 1.70174 1.06822 1.26080 1.55160 1.25852 0.95966 1.01732 1.01044 0.85314 0.77481 0.79037 0.78424 1.20047 1.22460 1.20226 1.19532 0.93199 0.85625 1.40947 0.90691 1.44263 1.36345 1.02760 1.49837 1.21573 0.98640 0.86032 0.93947 1.22545 0.87862 1.01731 0.90702 1.48038 1.32990 1.06218 1.45401 1.20808 0.82300 0.86162 0.81098 1.90622 1.30121 1.87070 1.38186 1.20861 0.96262 0.82735 0.99900 1.44727 1.37991 1.04323 1.51856 1.15956 0.82150 0.80761 0.80635 1.90900 1.35714 1.83488 1.40808 1.45125 1.36354 1.06014 1.50991 1.20908 0.99873 0.78654 0.94682 1.21909 1.00732 0.97314 0.96685 1.21492 1.01285 0.93496 0.99132 1.21566 1.00363 0.99226 0.94446 1.21487 1.00932 0.95120 0.97729 1.21776 1.02309 0.94465 0.97182 1.22143 1.00220 0.82928 0.96743 1.20909 0.88147 0.97903 0.88894 0.94051 0.96575 0.90089 0.89968 0.86830 0.88078 0.87113 0.75111 0.75455 0.91588 0.91146 0.94152 0.92425 0.91405 0.90948 0.91300 0.92073 0.90000 0.90860 0.90095 0.91272 0.90179 0.91146 0.98875 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -54.49 11.20 21.65 0.24 -54.25 16 2 C -0.05 -2.73 4.91 84.86 0.42 -2.32 16 3 Si 0.97 43.57 29.59 68.60 2.03 45.60 16 4 H -0.27 -11.92 7.11 99.48 0.71 -11.21 16 5 H -0.30 -13.67 7.11 99.48 0.71 -12.96 16 6 H -0.28 -12.01 7.11 99.48 0.71 -11.30 16 7 C -0.26 -13.75 9.57 84.03 0.80 -12.95 16 8 H 0.08 3.74 7.89 -2.91 -0.02 3.71 16 9 N -0.61 -29.08 2.96 -697.35 -2.06 -31.15 16 10 C 0.12 4.65 6.70 86.56 0.58 5.23 16 11 C 0.10 2.74 6.52 86.56 0.56 3.31 16 12 N -0.59 -19.66 2.95 -817.15 -2.41 -22.07 16 13 C 0.51 15.73 7.77 87.66 0.68 16.41 16 14 O -0.58 -20.83 15.08 -3.02 -0.05 -20.87 16 15 C 0.13 3.23 4.50 85.63 0.38 3.62 16 16 N -0.73 -17.22 5.53 -482.28 -2.67 -19.89 16 17 C 0.71 17.47 8.53 179.06 1.53 19.00 16 18 O -0.63 -20.12 16.01 -3.99 -0.06 -20.18 16 19 N -0.73 -12.73 5.08 -457.80 -2.33 -15.06 16 20 C 0.16 2.62 2.46 44.99 0.11 2.74 16 21 C -0.13 -2.07 5.50 30.59 0.17 -1.90 16 22 C -0.12 -1.47 5.92 30.59 0.18 -1.29 16 23 C -0.12 -1.05 5.92 30.59 0.18 -0.87 16 24 C -0.11 -0.97 5.92 30.58 0.18 -0.79 16 25 C -0.12 -1.17 5.39 30.58 0.16 -1.01 16 26 C 0.10 3.99 6.59 86.42 0.57 4.56 16 27 C 0.17 8.02 5.51 86.42 0.48 8.49 16 28 H 0.25 14.22 8.31 -92.71 -0.77 13.45 16 29 H 0.02 0.64 8.14 -2.39 -0.02 0.62 16 30 H 0.08 2.82 7.93 -2.39 -0.02 2.80 16 31 H 0.08 2.25 8.14 -2.39 -0.02 2.23 16 32 H 0.11 2.45 5.91 -2.39 -0.01 2.44 16 33 H 0.10 2.48 7.72 -2.39 -0.02 2.46 16 34 H 0.11 2.45 7.91 -2.38 -0.02 2.43 16 35 H 0.41 9.10 7.45 -92.71 -0.69 8.41 16 36 H 0.41 4.97 8.62 -92.71 -0.80 4.17 16 37 H 0.07 1.38 7.58 -2.39 -0.02 1.36 16 38 H 0.07 1.02 8.14 -2.38 -0.02 1.00 16 39 H 0.04 0.89 8.14 -2.39 -0.02 0.87 16 40 H 0.06 0.81 8.14 -2.39 -0.02 0.79 16 41 H 0.07 0.81 8.14 -2.39 -0.02 0.79 16 42 H 0.07 0.53 8.14 -2.38 -0.02 0.51 16 43 H 0.07 0.55 8.14 -2.39 -0.02 0.53 16 44 H 0.06 0.59 8.14 -2.39 -0.02 0.57 16 45 H 0.08 0.49 8.14 -2.39 -0.02 0.47 16 46 H 0.07 0.69 8.14 -2.39 -0.02 0.67 16 47 H 0.08 0.62 8.14 -2.39 -0.02 0.60 16 48 H 0.07 2.58 8.14 -2.39 -0.02 2.56 16 49 H 0.08 3.10 7.00 -2.38 -0.02 3.08 16 50 H 0.07 3.77 6.00 -2.39 -0.01 3.76 16 51 H -0.01 -0.36 8.14 -2.39 -0.02 -0.38 16 Total: -1.00 -70.35 397.72 -0.87 -71.22 By element: Atomic # 1 Polarization: 24.99 SS G_CDS: -0.55 Total: 24.43 kcal Atomic # 6 Polarization: 35.23 SS G_CDS: 6.99 Total: 42.22 kcal Atomic # 7 Polarization: -133.19 SS G_CDS: -9.22 Total: -142.42 kcal Atomic # 8 Polarization: -40.94 SS G_CDS: -0.11 Total: -41.05 kcal Atomic # 14 Polarization: 43.57 SS G_CDS: 2.03 Total: 45.60 kcal Total: -70.35 -0.87 -71.22 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000152655997.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.894 kcal (2) G-P(sol) polarization free energy of solvation -70.349 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.243 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.867 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.216 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.110 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds