Wall clock time and date at job start Tue Mar 31 2020 21:33:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.42896 * 114.00490 * 2 1 4 4 C 1.50704 * 109.47529 * 180.02562 * 3 2 1 5 5 C 1.34512 * 125.79195 * 89.99446 * 4 3 2 6 6 C 1.41386 * 106.83705 * 180.02562 * 5 4 3 7 7 C 1.34514 * 106.84380 * 0.22929 * 6 5 4 8 8 C 1.50698 * 125.78897 * 179.77265 * 7 6 5 9 9 N 1.46904 * 109.47048 * 89.99887 * 8 7 6 10 10 C 1.46902 * 111.00100 * 293.95376 * 9 8 7 11 11 C 1.50694 * 109.47113 * 164.56370 * 10 9 8 12 12 H 1.07998 * 120.00270 * 358.75260 * 11 10 9 13 13 C 1.37876 * 119.99800 * 178.75390 * 11 10 9 14 14 N 1.31509 * 120.00396 * 359.97438 * 13 11 10 15 15 Si 1.86805 * 119.99939 * 180.02562 * 13 11 10 16 16 H 1.48500 * 109.46920 * 359.97438 * 15 13 11 17 17 H 1.48497 * 109.47435 * 119.99900 * 15 13 11 18 18 H 1.48504 * 109.46702 * 239.99890 * 15 13 11 19 19 C 1.46897 * 111.00081 * 170.00088 * 9 8 7 20 20 C 1.53005 * 109.47096 * 284.09863 * 19 9 8 21 21 N 1.46902 * 109.47057 * 185.24814 * 20 19 9 22 22 C 1.47018 * 110.99413 * 293.62915 * 21 20 19 23 23 C 1.53102 * 109.25148 * 177.61153 * 22 21 20 24 24 O 1.43012 * 109.26039 * 56.84837 * 23 22 21 25 25 C 1.43015 * 113.74053 * 301.32855 * 24 23 22 26 26 C 1.47015 * 110.99837 * 169.99751 * 21 20 19 27 27 O 1.34302 * 108.41762 * 359.63331 * 7 6 5 28 28 H 1.08999 * 109.47172 * 300.00181 * 1 2 3 29 29 H 1.09002 * 109.47154 * 60.00024 * 1 2 3 30 30 H 1.08997 * 109.47319 * 180.02562 * 1 2 3 31 31 H 1.08997 * 109.47466 * 59.99642 * 3 2 1 32 32 H 1.09002 * 109.46780 * 299.99774 * 3 2 1 33 33 H 1.07998 * 126.57718 * 359.97438 * 5 4 3 34 34 H 1.07999 * 126.57624 * 179.97438 * 6 5 4 35 35 H 1.09002 * 109.47068 * 209.99924 * 8 7 6 36 36 H 1.08998 * 109.47001 * 330.00010 * 8 7 6 37 37 H 1.09001 * 109.46928 * 284.56611 * 10 9 8 38 38 H 1.09000 * 109.46718 * 44.56099 * 10 9 8 39 39 H 0.96999 * 120.00418 * 180.02562 * 14 13 11 40 40 H 1.09009 * 109.47267 * 44.09115 * 19 9 8 41 41 H 1.08998 * 109.47279 * 164.09667 * 19 9 8 42 42 H 1.09000 * 109.46584 * 305.24162 * 20 19 9 43 43 H 1.08993 * 109.47128 * 65.23956 * 20 19 9 44 44 H 1.08996 * 109.50952 * 297.53989 * 22 21 20 45 45 H 1.09000 * 109.50846 * 57.67722 * 22 21 20 46 46 H 1.09004 * 109.50467 * 296.91164 * 23 22 21 47 47 H 1.08999 * 109.54008 * 176.80889 * 23 22 21 48 48 H 1.09000 * 109.50824 * 298.73618 * 25 24 23 49 49 H 1.08997 * 109.54198 * 178.62625 * 25 24 23 50 50 H 1.08995 * 109.50697 * 302.32419 * 26 21 20 51 51 H 1.09001 * 109.50675 * 62.41018 * 26 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5126 1.1864 -0.0006 5 6 4.2964 1.1243 -1.0921 6 6 5.6295 1.0181 -0.6334 7 6 5.5803 1.0164 0.7109 8 6 6.7655 0.9150 1.6361 9 7 7.2642 2.2623 1.9425 10 6 7.8124 2.9066 0.7416 11 6 7.9609 4.3858 0.9884 12 1 7.6576 4.8084 1.9348 13 6 8.4839 5.1995 0.0059 14 7 8.8537 4.6848 -1.1464 15 14 8.6686 7.0330 0.3121 16 1 8.1836 7.3581 1.6775 17 1 10.0988 7.4136 0.1906 18 1 7.8695 7.7849 -0.6886 19 6 8.2616 2.2220 3.0202 20 6 7.5548 2.0200 4.3621 21 7 8.5375 2.1051 5.4507 22 6 9.4877 0.9849 5.3914 23 6 10.5267 1.1449 6.5045 24 8 9.8582 1.2215 7.7664 25 6 8.9256 2.3017 7.8592 26 6 7.8703 2.1536 6.7599 27 8 4.2959 1.1236 1.0885 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 -1.0276 0.0005 31 1 1.6887 1.8464 0.8899 32 1 1.6887 1.8463 -0.8900 33 1 3.9698 1.1499 -2.1212 34 1 6.5168 0.9473 -1.2450 35 1 6.4643 0.4202 2.5595 36 1 7.5539 0.3366 1.1544 37 1 8.7875 2.4769 0.5118 38 1 7.1368 2.7443 -0.0983 39 1 9.2219 5.2573 -1.8375 40 1 8.9522 1.3968 2.8455 41 1 8.8148 3.1610 3.0386 42 1 6.7983 2.7935 4.4942 43 1 7.0788 1.0397 4.3780 44 1 8.9518 0.0454 5.5261 45 1 9.9886 0.9834 4.4233 46 1 11.0991 2.0578 6.3396 47 1 11.2000 0.2876 6.5006 48 1 9.4513 3.2483 7.7338 49 1 8.4401 2.2815 8.8348 50 1 7.1906 3.0051 6.7908 51 1 7.3079 1.2331 6.9161 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000154759454.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:33:37 Heat of formation + Delta-G solvation = -53.905421 kcal Electronic energy + Delta-G solvation = -29912.405859 eV Core-core repulsion = 25814.417565 eV Total energy + Delta-G solvation = -4097.988295 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.204 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -42.15648 -39.55675 -37.92380 -37.23968 -35.42133 -32.64193 -32.60441 -31.39757 -31.14261 -29.50315 -28.32800 -26.88329 -26.17606 -24.89074 -24.03412 -23.54092 -21.93066 -21.30808 -20.45756 -20.17869 -19.55828 -16.85742 -16.68272 -16.62786 -16.32552 -16.13284 -15.81988 -15.46803 -15.35177 -15.10007 -15.01685 -14.71668 -14.43297 -14.09739 -13.89392 -13.59535 -13.43895 -12.86749 -12.76670 -12.64057 -12.37088 -12.32463 -12.01178 -11.88507 -11.85786 -11.53875 -11.50968 -11.42235 -11.04831 -10.93381 -10.70225 -10.64548 -10.42562 -10.29737 -9.92445 -9.88398 -9.66174 -9.40603 -9.19254 -8.42254 -8.29645 -7.97555 -7.37423 -6.01605 -4.01720 1.98195 2.92624 3.21464 3.31889 3.39466 3.44985 3.72213 3.88475 4.00356 4.44541 4.82256 4.85287 4.93814 5.00695 5.03835 5.08432 5.11760 5.16099 5.20647 5.23222 5.24733 5.34024 5.38294 5.45684 5.47512 5.50168 5.53115 5.57381 5.69780 5.71379 5.76450 5.81581 5.86276 5.95398 6.01048 6.22722 6.37742 6.40416 6.49121 6.59248 6.92903 6.95988 7.00474 7.11248 7.13841 7.22260 7.28148 7.61117 7.80147 8.05205 8.12538 8.49356 9.05535 9.61914 11.09198 Molecular weight = 338.20amu Principal moments of inertia in cm(-1) A = 0.006648 B = 0.003597 C = 0.002559 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4210.619163 B = 7782.043693 C =10938.334669 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.388 6.388 3 C 0.149 3.851 4 C -0.038 4.038 5 C -0.174 4.174 6 C -0.202 4.202 7 C 0.030 3.970 8 C 0.129 3.871 9 N -0.532 5.532 10 C 0.186 3.814 11 C -0.502 4.502 12 H 0.064 0.936 13 C 0.056 3.944 14 N -0.898 5.898 15 Si 0.895 3.105 16 H -0.272 1.272 17 H -0.285 1.285 18 H -0.285 1.285 19 C 0.070 3.930 20 C 0.062 3.938 21 N -0.534 5.534 22 C 0.015 3.985 23 C 0.064 3.936 24 O -0.390 6.390 25 C 0.064 3.936 26 C 0.019 3.981 27 O -0.165 6.165 28 H 0.042 0.958 29 H 0.043 0.957 30 H 0.086 0.914 31 H 0.066 0.934 32 H 0.080 0.920 33 H 0.144 0.856 34 H 0.148 0.852 35 H 0.076 0.924 36 H 0.057 0.943 37 H -0.007 1.007 38 H 0.043 0.957 39 H 0.260 0.740 40 H 0.021 0.979 41 H 0.098 0.902 42 H 0.084 0.916 43 H 0.026 0.974 44 H 0.039 0.961 45 H 0.090 0.910 46 H 0.061 0.939 47 H 0.095 0.905 48 H 0.060 0.940 49 H 0.094 0.906 50 H 0.086 0.914 51 H 0.039 0.961 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.909 -9.192 8.927 15.058 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.307 6.307 3 C 0.073 3.927 4 C -0.088 4.088 5 C -0.194 4.194 6 C -0.222 4.222 7 C -0.021 4.021 8 C 0.001 3.999 9 N -0.258 5.258 10 C 0.061 3.939 11 C -0.541 4.541 12 H 0.082 0.918 13 C -0.145 4.145 14 N -0.538 5.538 15 Si 0.723 3.277 16 H -0.196 1.196 17 H -0.211 1.211 18 H -0.211 1.211 19 C -0.058 4.058 20 C -0.066 4.066 21 N -0.260 5.260 22 C -0.113 4.113 23 C -0.013 4.013 24 O -0.309 6.309 25 C -0.013 4.013 26 C -0.109 4.109 27 O -0.061 6.061 28 H 0.061 0.939 29 H 0.061 0.939 30 H 0.105 0.895 31 H 0.084 0.916 32 H 0.098 0.902 33 H 0.162 0.838 34 H 0.166 0.834 35 H 0.094 0.906 36 H 0.075 0.925 37 H 0.011 0.989 38 H 0.061 0.939 39 H 0.069 0.931 40 H 0.039 0.961 41 H 0.116 0.884 42 H 0.103 0.897 43 H 0.045 0.955 44 H 0.057 0.943 45 H 0.109 0.891 46 H 0.079 0.921 47 H 0.113 0.887 48 H 0.078 0.922 49 H 0.113 0.887 50 H 0.105 0.895 51 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges -7.925 -8.701 9.311 15.007 hybrid contribution 0.100 0.279 -0.768 0.823 sum -7.825 -8.422 8.543 14.323 Atomic orbital electron populations 1.22753 0.80760 1.02879 1.00124 1.87988 1.19703 1.27534 1.95467 1.20585 0.85032 0.85106 1.01982 1.21595 0.92077 1.10367 0.84780 1.21519 0.92950 1.05986 0.98944 1.21577 0.97949 1.08626 0.94079 1.22298 0.82692 1.02842 0.94318 1.20497 0.90072 0.93131 0.96244 1.62016 1.38125 1.14561 1.11073 1.19922 0.93413 0.94133 0.86401 1.21154 1.40366 0.91862 1.00692 0.91804 1.24945 0.95674 0.98759 0.95081 1.69957 1.43345 1.35405 1.05114 0.86488 0.77558 0.85352 0.78330 1.19620 1.21134 1.21136 1.21930 0.92664 1.02213 0.89000 1.22178 0.93792 1.00104 0.90493 1.62131 1.18192 1.43114 1.02560 1.22836 0.95483 0.92425 1.00590 1.22677 0.93830 1.02273 0.82553 1.87943 1.57025 1.51306 1.34597 1.22657 0.90126 0.90356 0.98155 1.22750 0.96784 1.01613 0.89761 1.83908 1.16842 1.70739 1.34593 0.93899 0.93875 0.89516 0.91598 0.90213 0.83810 0.83382 0.90554 0.92475 0.98941 0.93895 0.93064 0.96071 0.88368 0.89736 0.95532 0.94312 0.89147 0.92102 0.88691 0.92174 0.88742 0.89539 0.94296 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.27 11.01 101.05 1.11 1.38 16 2 O -0.39 -5.12 10.69 -35.23 -0.38 -5.49 16 3 C 0.15 1.94 6.47 36.01 0.23 2.17 16 4 C -0.04 -0.65 6.95 -35.62 -0.25 -0.90 16 5 C -0.17 -3.00 10.81 -39.70 -0.43 -3.43 16 6 C -0.20 -3.83 9.12 -39.70 -0.36 -4.20 16 7 C 0.03 0.57 6.27 -35.63 -0.22 0.35 16 8 C 0.13 2.32 5.32 -4.97 -0.03 2.29 16 9 N -0.53 -11.10 4.37 -237.51 -1.04 -12.14 16 10 C 0.19 4.69 4.59 -4.98 -0.02 4.66 16 11 C -0.50 -13.90 8.31 -34.44 -0.29 -14.19 16 12 H 0.06 1.78 7.71 -52.49 -0.40 1.38 16 13 C 0.06 1.59 5.46 -17.82 -0.10 1.49 16 14 N -0.90 -26.32 13.29 55.43 0.74 -25.58 16 15 Si 0.89 21.66 29.54 -169.99 -5.02 16.64 16 16 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16 17 H -0.29 -6.83 7.11 56.52 0.40 -6.42 16 18 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 19 C 0.07 1.29 4.63 -3.82 -0.02 1.27 16 20 C 0.06 0.97 4.99 -3.82 -0.02 0.95 16 21 N -0.53 -7.55 4.73 -234.31 -1.11 -8.65 16 22 C 0.01 0.19 5.44 -3.71 -0.02 0.17 16 23 C 0.06 0.73 7.01 37.21 0.26 0.99 16 24 O -0.39 -4.94 10.83 -35.23 -0.38 -5.32 16 25 C 0.06 0.70 7.01 37.21 0.26 0.96 16 26 C 0.02 0.23 5.64 -3.71 -0.02 0.21 16 27 O -0.16 -3.16 10.65 5.71 0.06 -3.09 16 28 H 0.04 0.32 8.14 -51.93 -0.42 -0.10 16 29 H 0.04 0.31 8.14 -51.93 -0.42 -0.12 16 30 H 0.09 0.62 8.14 -51.93 -0.42 0.20 16 31 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 32 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 33 H 0.14 2.09 8.06 -52.49 -0.42 1.67 16 34 H 0.15 2.77 7.95 -52.49 -0.42 2.35 16 35 H 0.08 1.23 6.73 -51.93 -0.35 0.88 16 36 H 0.06 0.98 8.12 -51.93 -0.42 0.56 16 37 H -0.01 -0.19 8.06 -51.93 -0.42 -0.61 16 38 H 0.04 1.15 5.52 -51.93 -0.29 0.87 16 39 H 0.26 7.22 8.31 -40.82 -0.34 6.88 16 40 H 0.02 0.37 6.62 -51.92 -0.34 0.02 16 41 H 0.10 2.07 7.03 -51.93 -0.36 1.71 16 42 H 0.08 1.41 8.04 -51.93 -0.42 0.99 16 43 H 0.03 0.40 6.94 -51.93 -0.36 0.04 16 44 H 0.04 0.49 8.14 -51.93 -0.42 0.07 16 45 H 0.09 1.15 6.50 -51.93 -0.34 0.82 16 46 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 47 H 0.10 0.89 8.14 -51.93 -0.42 0.47 16 48 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 49 H 0.09 0.83 8.14 -51.93 -0.42 0.40 16 50 H 0.09 0.98 8.09 -51.93 -0.42 0.56 16 51 H 0.04 0.47 8.14 -51.93 -0.42 0.05 16 LS Contribution 407.67 15.07 6.14 6.14 Total: -1.00 -32.28 407.67 -9.64 -41.92 By element: Atomic # 1 Polarization: 10.14 SS G_CDS: -8.75 Total: 1.38 kcal Atomic # 6 Polarization: -5.91 SS G_CDS: 0.09 Total: -5.81 kcal Atomic # 7 Polarization: -44.96 SS G_CDS: -1.41 Total: -46.37 kcal Atomic # 8 Polarization: -13.21 SS G_CDS: -0.70 Total: -13.90 kcal Atomic # 14 Polarization: 21.66 SS G_CDS: -5.02 Total: 16.64 kcal Total LS contribution 6.14 Total: 6.14 kcal Total: -32.28 -9.64 -41.92 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000154759454.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.983 kcal (2) G-P(sol) polarization free energy of solvation -32.280 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.264 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.642 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.922 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.905 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds