Wall clock time and date at job start Tue Mar 31 2020 22:06:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86802 * 119.99400 * 2 1 4 4 H 1.48499 * 109.47428 * 269.99681 * 3 2 1 5 5 H 1.48501 * 109.47282 * 29.99963 * 3 2 1 6 6 H 1.48504 * 109.46820 * 149.99751 * 3 2 1 7 7 C 1.37869 * 120.00291 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99910 * 180.02562 * 7 2 1 9 9 C 1.50699 * 120.00388 * 0.02562 * 7 2 1 10 10 C 1.52991 * 109.47473 * 180.02562 * 9 7 2 11 11 C 1.53006 * 109.47416 * 179.97438 * 10 9 7 12 12 N 1.46494 * 109.47382 * 179.97438 * 11 10 9 13 13 C 1.34771 * 119.99951 * 180.02562 * 12 11 10 14 14 O 1.21580 * 120.00244 * 5.07621 * 13 12 11 15 15 N 1.34787 * 120.00051 * 185.08079 * 13 12 11 16 16 C 1.47073 * 120.88140 * 175.00153 * 15 13 12 17 17 C 1.53239 * 108.52023 * 231.16057 * 16 15 13 18 18 N 1.46895 * 109.34248 * 306.17282 * 17 16 15 19 19 C 1.46898 * 111.00143 * 187.25467 * 18 17 16 20 20 C 1.50703 * 109.47123 * 169.99981 * 19 18 17 21 21 O 1.21275 * 119.99912 * 359.97438 * 20 19 18 22 22 N 1.34771 * 119.99864 * 179.72669 * 20 19 18 23 23 C 1.46505 * 119.99999 * 180.27614 * 22 20 19 24 24 C 1.53001 * 117.49755 * 223.74367 * 23 22 20 25 25 C 1.53005 * 117.49780 * 155.08553 * 23 22 20 26 26 C 1.46897 * 111.26921 * 63.10247 * 18 17 16 27 27 C 1.47081 * 120.87804 * 354.97919 * 15 13 12 28 28 H 0.96997 * 120.00216 * 0.02562 * 1 2 3 29 29 H 1.08998 * 109.46925 * 59.99489 * 9 7 2 30 30 H 1.09009 * 109.46783 * 300.00426 * 9 7 2 31 31 H 1.08998 * 109.47632 * 59.99714 * 10 9 7 32 32 H 1.08997 * 109.47138 * 299.99551 * 10 9 7 33 33 H 1.08998 * 109.46933 * 59.99311 * 11 10 9 34 34 H 1.08997 * 109.46620 * 299.99892 * 11 10 9 35 35 H 0.97004 * 120.00089 * 359.97438 * 12 11 10 36 36 H 1.08999 * 109.62713 * 111.45249 * 16 15 13 37 37 H 1.09000 * 109.78994 * 350.96491 * 16 15 13 38 38 H 1.08999 * 109.49149 * 186.20893 * 17 16 15 39 39 H 1.09002 * 109.48916 * 66.13469 * 17 16 15 40 40 H 1.08999 * 109.47130 * 49.99604 * 19 18 17 41 41 H 1.09004 * 109.47194 * 289.99862 * 19 18 17 42 42 H 0.97002 * 120.00274 * 0.26799 * 22 20 19 43 43 H 1.09000 * 115.55009 * 9.41100 * 23 22 20 44 44 H 1.09007 * 117.49586 * 359.97438 * 24 23 22 45 45 H 1.08999 * 117.50183 * 145.01879 * 24 23 22 46 46 H 1.09004 * 117.49254 * 214.97881 * 25 23 22 47 47 H 1.09001 * 117.49773 * 359.96924 * 25 23 22 48 48 H 1.09002 * 109.49243 * 56.85944 * 26 18 17 49 49 H 1.09005 * 109.49372 * 176.93781 * 26 18 17 50 50 H 1.09005 * 109.62438 * 248.54760 * 27 15 13 51 51 H 1.08996 * 109.62948 * 9.12689 * 27 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6179 0.0000 4 1 2.4966 2.0466 -1.4000 5 1 1.4464 2.6527 0.7000 6 1 3.5466 1.4404 0.7001 7 6 2.0046 -1.1939 0.0005 8 1 3.0846 -1.1939 0.0010 9 6 1.2513 -2.4991 0.0005 10 6 2.2455 -3.6619 0.0018 11 6 1.4806 -4.9871 0.0025 12 7 2.4327 -6.1005 0.0031 13 6 1.9835 -7.3711 0.0032 14 8 0.7921 -7.5948 -0.0904 15 7 2.8551 -8.3940 0.1071 16 6 2.3806 -9.7816 0.2190 17 6 3.0662 -10.4348 1.4239 18 7 4.5218 -10.2845 1.2959 19 6 5.2232 -11.0442 2.3393 20 6 6.6991 -11.0698 2.0357 21 8 7.1246 -10.5107 1.0472 22 7 7.5468 -11.7098 2.8654 23 6 8.9823 -11.7295 2.5734 24 6 9.7203 -13.0584 2.7474 25 6 9.9400 -11.9235 3.7508 26 6 4.9155 -8.8695 1.3203 27 6 4.3058 -8.1521 0.1112 28 1 -0.4850 0.8400 -0.0004 29 1 0.6249 -2.5571 -0.8896 30 1 0.6242 -2.5567 0.8903 31 1 2.8716 -3.6038 0.8922 32 1 2.8728 -3.6046 -0.8877 33 1 0.8543 -5.0455 -0.8877 34 1 0.8537 -5.0442 0.8922 35 1 3.3864 -5.9232 0.0027 36 1 2.6346 -10.3297 -0.6883 37 1 1.3002 -9.7918 0.3626 38 1 2.8114 -11.4941 1.4571 39 1 2.7296 -9.9504 2.3405 40 1 4.8399 -12.0642 2.3659 41 1 5.0595 -10.5693 3.3067 42 1 7.2064 -12.1572 3.6558 43 1 9.3063 -11.0762 1.7633 44 1 9.1378 -13.9179 3.0795 45 1 10.5302 -13.2792 2.0521 46 1 10.8943 -11.3979 3.7150 47 1 9.5020 -12.0358 4.7426 48 1 4.5533 -8.4069 2.2384 49 1 6.0021 -8.7935 1.2784 50 1 4.7448 -8.5436 -0.8066 51 1 4.4984 -7.0819 0.1850 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000171450027.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:06:26 Heat of formation + Delta-G solvation = -25.110672 kcal Electronic energy + Delta-G solvation = -28807.623463 eV Core-core repulsion = 24743.176554 eV Total energy + Delta-G solvation = -4064.446909 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -40.69548 -40.03203 -38.32139 -37.30849 -35.41289 -34.63948 -33.38045 -33.26438 -31.60491 -30.83130 -29.29581 -26.76851 -25.48082 -24.05883 -23.05181 -22.97150 -22.39774 -21.36022 -21.03468 -20.56842 -19.30340 -18.07950 -17.67937 -17.02610 -16.49218 -16.16422 -15.89417 -15.65529 -15.47806 -15.10444 -14.95905 -14.82075 -14.51773 -14.33340 -14.18425 -13.94408 -13.62280 -13.22843 -13.19182 -12.62554 -12.37665 -12.23746 -12.17463 -11.91297 -11.82528 -11.66127 -11.60883 -11.49989 -11.36928 -11.08918 -10.88486 -10.66611 -10.57005 -10.21643 -9.98878 -9.82902 -9.41129 -9.29898 -9.09923 -8.99697 -8.74782 -8.38028 -8.34776 -5.99547 -4.02531 2.12363 2.40253 2.72009 3.32376 3.34206 3.34918 3.38596 3.41446 3.52491 4.02333 4.17666 4.20949 4.36147 4.41529 4.46263 4.54433 4.68576 4.72118 4.76795 4.98163 5.03116 5.04741 5.10578 5.21328 5.22937 5.35873 5.36141 5.48715 5.53763 5.56470 5.64593 5.75155 5.82870 5.86260 5.96953 6.22295 6.37723 6.39738 6.58519 6.61057 6.66053 6.85963 6.96823 7.05859 7.09263 7.66506 7.76828 7.79587 7.99513 8.11574 8.40597 8.77584 9.04140 9.61475 11.11696 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.014025 B = 0.001785 C = 0.001612 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1996.006177 B =15680.264247 C =17365.801201 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.057 3.943 3 Si 0.893 3.107 4 H -0.280 1.280 5 H -0.286 1.286 6 H -0.274 1.274 7 C -0.522 4.522 8 H 0.055 0.945 9 C 0.024 3.976 10 C -0.120 4.120 11 C 0.134 3.866 12 N -0.742 5.742 13 C 0.705 3.295 14 O -0.592 6.592 15 N -0.637 5.637 16 C 0.137 3.863 17 C 0.042 3.958 18 N -0.520 5.520 19 C 0.037 3.963 20 C 0.518 3.482 21 O -0.514 6.514 22 N -0.707 5.707 23 C 0.081 3.919 24 C -0.194 4.194 25 C -0.190 4.190 26 C 0.037 3.963 27 C 0.120 3.880 28 H 0.261 0.739 29 H 0.020 0.980 30 H 0.019 0.981 31 H 0.053 0.947 32 H 0.054 0.946 33 H 0.063 0.937 34 H 0.061 0.939 35 H 0.393 0.607 36 H 0.071 0.929 37 H 0.098 0.902 38 H 0.088 0.912 39 H 0.042 0.958 40 H 0.107 0.893 41 H 0.066 0.934 42 H 0.401 0.599 43 H 0.139 0.861 44 H 0.097 0.903 45 H 0.102 0.898 46 H 0.104 0.896 47 H 0.097 0.903 48 H 0.036 0.964 49 H 0.103 0.897 50 H 0.079 0.921 51 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.501 -30.532 8.698 36.251 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.145 4.145 3 Si 0.721 3.279 4 H -0.207 1.207 5 H -0.212 1.212 6 H -0.199 1.199 7 C -0.560 4.560 8 H 0.073 0.927 9 C -0.014 4.014 10 C -0.158 4.158 11 C 0.011 3.989 12 N -0.399 5.399 13 C 0.406 3.594 14 O -0.471 6.471 15 N -0.376 5.376 16 C 0.014 3.986 17 C -0.087 4.087 18 N -0.245 5.245 19 C -0.094 4.094 20 C 0.304 3.696 21 O -0.388 6.388 22 N -0.359 5.359 23 C -0.025 4.025 24 C -0.232 4.232 25 C -0.228 4.228 26 C -0.092 4.092 27 C -0.003 4.003 28 H 0.070 0.930 29 H 0.038 0.962 30 H 0.037 0.963 31 H 0.071 0.929 32 H 0.073 0.927 33 H 0.081 0.919 34 H 0.079 0.921 35 H 0.229 0.771 36 H 0.089 0.911 37 H 0.116 0.884 38 H 0.106 0.894 39 H 0.060 0.940 40 H 0.125 0.875 41 H 0.083 0.917 42 H 0.235 0.765 43 H 0.156 0.844 44 H 0.115 0.885 45 H 0.121 0.879 46 H 0.122 0.878 47 H 0.115 0.885 48 H 0.054 0.946 49 H 0.121 0.879 50 H 0.097 0.903 51 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 16.844 -30.289 7.444 35.448 hybrid contribution 0.658 1.020 1.325 1.797 sum 17.502 -29.269 8.769 35.212 Atomic orbital electron populations 1.69969 1.06036 1.26642 1.50603 1.25027 0.94855 0.99270 0.95312 0.86584 0.79781 0.83464 0.78090 1.20662 1.21227 1.19928 1.21208 0.92997 0.90960 1.50866 0.92656 1.19028 0.93855 0.90792 0.97701 1.21888 0.99791 0.93363 1.00791 1.21511 0.91328 0.84200 1.01845 1.45556 1.10495 1.04489 1.79320 1.15907 0.84837 0.80774 0.77846 1.90897 1.14344 1.83803 1.58038 1.47343 1.05602 1.06066 1.78566 1.21456 0.99787 0.80075 0.97318 1.22586 0.86469 1.01334 0.98280 1.61598 1.05957 1.10928 1.45978 1.21945 0.91423 1.01219 0.94837 1.20584 0.88269 0.77972 0.82768 1.90698 1.78319 1.43163 1.26637 1.45396 1.06106 1.56447 1.27927 1.21601 0.79422 1.00558 1.00918 1.23442 1.03617 0.93070 1.03101 1.23400 1.01414 1.02892 0.95135 1.22673 1.02378 0.86775 0.97325 1.21657 0.80006 0.99798 0.98876 0.92956 0.96195 0.96261 0.92860 0.92745 0.91864 0.92098 0.77149 0.91051 0.88384 0.89352 0.94019 0.87525 0.91654 0.76496 0.84376 0.88502 0.87923 0.87780 0.88456 0.94570 0.87865 0.90305 0.89968 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.03 13.29 55.43 0.74 -26.29 16 2 C 0.06 1.63 5.46 -17.82 -0.10 1.54 16 3 Si 0.89 21.68 29.54 -169.99 -5.02 16.66 16 4 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 5 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 6 H -0.27 -6.50 7.11 56.52 0.40 -6.10 16 7 C -0.52 -14.75 9.11 -34.44 -0.31 -15.07 16 8 H 0.06 1.50 7.74 -52.49 -0.41 1.10 16 9 C 0.02 0.62 4.97 -27.89 -0.14 0.48 16 10 C -0.12 -2.42 5.27 -26.73 -0.14 -2.56 16 11 C 0.13 2.50 5.68 -4.04 -0.02 2.47 16 12 N -0.74 -11.69 5.47 -65.23 -0.36 -12.05 16 13 C 0.70 11.65 8.31 -86.91 -0.72 10.93 16 14 O -0.59 -12.06 15.83 5.30 0.08 -11.98 16 15 N -0.64 -8.11 3.01 -178.20 -0.54 -8.65 16 16 C 0.14 1.47 6.58 -3.61 -0.02 1.44 16 17 C 0.04 0.34 5.62 -3.70 -0.02 0.32 16 18 N -0.52 -4.43 4.37 -235.77 -1.03 -5.46 16 19 C 0.04 0.22 5.45 -4.98 -0.03 0.19 16 20 C 0.52 3.95 7.49 -10.99 -0.08 3.87 16 21 O -0.51 -5.98 13.90 5.56 0.08 -5.91 16 22 N -0.71 -3.54 5.57 -53.80 -0.30 -3.84 16 23 C 0.08 0.44 6.43 -67.92 -0.44 0.01 16 24 C -0.19 -0.76 10.46 -26.69 -0.28 -1.04 16 25 C -0.19 -0.70 10.46 -26.69 -0.28 -0.97 16 26 C 0.04 0.35 5.26 -3.70 -0.02 0.33 16 27 C 0.12 1.26 6.59 -3.60 -0.02 1.23 16 28 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 29 H 0.02 0.54 8.14 -51.93 -0.42 0.12 16 30 H 0.02 0.52 8.14 -51.92 -0.42 0.10 16 31 H 0.05 1.03 8.14 -51.93 -0.42 0.60 16 32 H 0.05 1.06 8.14 -51.93 -0.42 0.63 16 33 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16 34 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 35 H 0.39 5.17 5.97 -40.82 -0.24 4.92 16 36 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16 37 H 0.10 1.16 7.11 -51.93 -0.37 0.79 16 38 H 0.09 0.51 7.99 -51.93 -0.41 0.09 16 39 H 0.04 0.36 8.14 -51.93 -0.42 -0.06 16 40 H 0.11 0.39 7.97 -51.93 -0.41 -0.03 16 41 H 0.07 0.30 8.12 -51.93 -0.42 -0.12 16 42 H 0.40 0.87 8.83 -40.82 -0.36 0.51 16 43 H 0.14 0.99 7.40 -51.93 -0.38 0.61 16 44 H 0.10 0.32 8.14 -51.92 -0.42 -0.10 16 45 H 0.10 0.37 8.14 -51.93 -0.42 -0.06 16 46 H 0.10 0.34 8.14 -51.93 -0.42 -0.08 16 47 H 0.10 0.28 8.14 -51.93 -0.42 -0.15 16 48 H 0.04 0.35 8.14 -51.93 -0.42 -0.07 16 49 H 0.10 1.05 5.77 -51.93 -0.30 0.75 16 50 H 0.08 0.84 8.14 -51.93 -0.42 0.41 16 51 H 0.08 0.79 5.63 -51.93 -0.29 0.49 16 LS Contribution 410.25 15.07 6.18 6.18 Total: -1.00 -36.14 410.25 -11.45 -47.59 By element: Atomic # 1 Polarization: 9.23 SS G_CDS: -8.66 Total: 0.57 kcal Atomic # 6 Polarization: 5.80 SS G_CDS: -2.63 Total: 3.17 kcal Atomic # 7 Polarization: -54.80 SS G_CDS: -1.49 Total: -56.29 kcal Atomic # 8 Polarization: -18.04 SS G_CDS: 0.16 Total: -17.88 kcal Atomic # 14 Polarization: 21.68 SS G_CDS: -5.02 Total: 16.66 kcal Total LS contribution 6.18 Total: 6.18 kcal Total: -36.14 -11.45 -47.59 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000171450027.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.479 kcal (2) G-P(sol) polarization free energy of solvation -36.138 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.659 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.451 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.589 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.111 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds