Wall clock time and date at job start Tue Mar 31 2020 22:06:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86802 * 119.99400 * 2 1 4 4 H 1.48499 * 109.47428 * 269.99681 * 3 2 1 5 5 H 1.48501 * 109.47282 * 29.99963 * 3 2 1 6 6 H 1.48504 * 109.46820 * 149.99751 * 3 2 1 7 7 C 1.37869 * 120.00291 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99910 * 180.02562 * 7 2 1 9 9 C 1.50699 * 120.00388 * 0.02562 * 7 2 1 10 10 C 1.52991 * 109.47473 * 180.02562 * 9 7 2 11 11 C 1.53006 * 109.47416 * 179.97438 * 10 9 7 12 12 N 1.46494 * 109.47382 * 179.97438 * 11 10 9 13 13 C 1.34771 * 119.99951 * 180.02562 * 12 11 10 14 14 O 1.21580 * 120.00244 * 5.07621 * 13 12 11 15 15 N 1.34787 * 120.00051 * 185.08079 * 13 12 11 16 16 C 1.47073 * 120.88140 * 175.00153 * 15 13 12 17 17 C 1.53239 * 108.52023 * 231.16057 * 16 15 13 18 18 N 1.46895 * 109.34248 * 306.17282 * 17 16 15 19 19 C 1.46898 * 111.00143 * 187.25467 * 18 17 16 20 20 C 1.50703 * 109.47123 * 169.99981 * 19 18 17 21 21 O 1.21275 * 119.99912 * 359.97438 * 20 19 18 22 22 N 1.34771 * 119.99864 * 179.72669 * 20 19 18 23 23 C 1.46505 * 119.99999 * 180.27614 * 22 20 19 24 24 C 1.53001 * 117.49755 * 223.74367 * 23 22 20 25 25 C 1.53005 * 117.49780 * 155.08553 * 23 22 20 26 26 C 1.46897 * 111.26921 * 63.10247 * 18 17 16 27 27 C 1.47081 * 120.87804 * 354.97919 * 15 13 12 28 28 H 0.96997 * 120.00216 * 0.02562 * 1 2 3 29 29 H 1.08998 * 109.46925 * 59.99489 * 9 7 2 30 30 H 1.09009 * 109.46783 * 300.00426 * 9 7 2 31 31 H 1.08998 * 109.47632 * 59.99714 * 10 9 7 32 32 H 1.08997 * 109.47138 * 299.99551 * 10 9 7 33 33 H 1.08998 * 109.46933 * 59.99311 * 11 10 9 34 34 H 1.08997 * 109.46620 * 299.99892 * 11 10 9 35 35 H 0.97004 * 120.00089 * 359.97438 * 12 11 10 36 36 H 1.08999 * 109.62713 * 111.45249 * 16 15 13 37 37 H 1.09000 * 109.78994 * 350.96491 * 16 15 13 38 38 H 1.08999 * 109.49149 * 186.20893 * 17 16 15 39 39 H 1.09002 * 109.48916 * 66.13469 * 17 16 15 40 40 H 1.08999 * 109.47130 * 49.99604 * 19 18 17 41 41 H 1.09004 * 109.47194 * 289.99862 * 19 18 17 42 42 H 0.97002 * 120.00274 * 0.26799 * 22 20 19 43 43 H 1.09000 * 115.55009 * 9.41100 * 23 22 20 44 44 H 1.09007 * 117.49586 * 359.97438 * 24 23 22 45 45 H 1.08999 * 117.50183 * 145.01879 * 24 23 22 46 46 H 1.09004 * 117.49254 * 214.97881 * 25 23 22 47 47 H 1.09001 * 117.49773 * 359.96924 * 25 23 22 48 48 H 1.09002 * 109.49243 * 56.85944 * 26 18 17 49 49 H 1.09005 * 109.49372 * 176.93781 * 26 18 17 50 50 H 1.09005 * 109.62438 * 248.54760 * 27 15 13 51 51 H 1.08996 * 109.62948 * 9.12689 * 27 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6179 0.0000 4 1 2.4966 2.0466 -1.4000 5 1 1.4464 2.6527 0.7000 6 1 3.5466 1.4404 0.7001 7 6 2.0046 -1.1939 0.0005 8 1 3.0846 -1.1939 0.0010 9 6 1.2513 -2.4991 0.0005 10 6 2.2455 -3.6619 0.0018 11 6 1.4806 -4.9871 0.0025 12 7 2.4327 -6.1005 0.0031 13 6 1.9835 -7.3711 0.0032 14 8 0.7921 -7.5948 -0.0904 15 7 2.8551 -8.3940 0.1071 16 6 2.3806 -9.7816 0.2190 17 6 3.0662 -10.4348 1.4239 18 7 4.5218 -10.2845 1.2959 19 6 5.2232 -11.0442 2.3393 20 6 6.6991 -11.0698 2.0357 21 8 7.1246 -10.5107 1.0472 22 7 7.5468 -11.7098 2.8654 23 6 8.9823 -11.7295 2.5734 24 6 9.7203 -13.0584 2.7474 25 6 9.9400 -11.9235 3.7508 26 6 4.9155 -8.8695 1.3203 27 6 4.3058 -8.1521 0.1112 28 1 -0.4850 0.8400 -0.0004 29 1 0.6249 -2.5571 -0.8896 30 1 0.6242 -2.5567 0.8903 31 1 2.8716 -3.6038 0.8922 32 1 2.8728 -3.6046 -0.8877 33 1 0.8543 -5.0455 -0.8877 34 1 0.8537 -5.0442 0.8922 35 1 3.3864 -5.9232 0.0027 36 1 2.6346 -10.3297 -0.6883 37 1 1.3002 -9.7918 0.3626 38 1 2.8114 -11.4941 1.4571 39 1 2.7296 -9.9504 2.3405 40 1 4.8399 -12.0642 2.3659 41 1 5.0595 -10.5693 3.3067 42 1 7.2064 -12.1572 3.6558 43 1 9.3063 -11.0762 1.7633 44 1 9.1378 -13.9179 3.0795 45 1 10.5302 -13.2792 2.0521 46 1 10.8943 -11.3979 3.7150 47 1 9.5020 -12.0358 4.7426 48 1 4.5533 -8.4069 2.2384 49 1 6.0021 -8.7935 1.2784 50 1 4.7448 -8.5436 -0.8066 51 1 4.4984 -7.0819 0.1850 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000171450027.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:06:25 Heat of formation + Delta-G solvation = -51.821667 kcal Electronic energy + Delta-G solvation = -28808.781739 eV Core-core repulsion = 24743.176554 eV Total energy + Delta-G solvation = -4065.605185 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -41.59075 -40.85512 -39.10644 -37.87696 -36.99696 -35.64164 -35.15194 -33.85520 -33.09035 -31.98600 -30.10787 -28.46010 -26.42852 -25.09123 -24.55763 -23.25574 -22.96994 -22.31325 -22.25526 -21.56938 -20.44788 -19.21437 -18.48697 -18.21436 -17.48635 -17.36000 -16.97858 -16.56122 -16.48279 -16.17766 -15.92560 -15.73505 -15.52029 -15.41591 -15.30351 -14.98209 -14.54425 -14.26889 -14.15607 -13.73954 -13.65085 -13.48205 -13.28008 -12.95673 -12.74860 -12.60961 -12.52319 -12.42856 -12.38345 -12.34455 -12.24704 -12.06203 -11.68260 -11.59822 -11.44073 -11.28293 -11.11749 -10.83488 -10.54894 -10.27568 -9.75388 -9.63351 -9.27418 -8.18909 -6.30464 1.41687 1.43247 1.53727 1.56712 1.60505 1.97479 2.07670 2.42059 2.87331 2.90256 3.01032 3.14673 3.70846 3.82528 3.86092 3.97915 4.04777 4.07834 4.09947 4.15946 4.21634 4.22623 4.26363 4.43096 4.44484 4.52847 4.55670 4.75828 4.78440 4.79161 4.82758 4.87300 4.94582 4.97811 5.04266 5.04642 5.15576 5.22136 5.43237 5.46031 5.53822 5.55789 5.70916 5.74693 5.84371 5.92984 5.99008 6.22915 6.58067 6.85784 6.91141 7.29980 7.38925 7.49517 8.93136 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.014025 B = 0.001785 C = 0.001612 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1996.006177 B =15680.264247 C =17365.801201 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.003 4.003 3 Si 0.968 3.032 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.261 1.261 7 C -0.542 4.542 8 H 0.066 0.934 9 C 0.024 3.976 10 C -0.100 4.100 11 C 0.150 3.850 12 N -0.733 5.733 13 C 0.701 3.299 14 O -0.636 6.636 15 N -0.629 5.629 16 C 0.130 3.870 17 C 0.052 3.948 18 N -0.533 5.533 19 C 0.040 3.960 20 C 0.514 3.486 21 O -0.563 6.563 22 N -0.693 5.693 23 C 0.056 3.944 24 C -0.186 4.186 25 C -0.177 4.177 26 C 0.046 3.954 27 C 0.118 3.882 28 H 0.263 0.737 29 H -0.007 1.007 30 H -0.006 1.006 31 H 0.067 0.933 32 H 0.066 0.934 33 H 0.046 0.954 34 H 0.048 0.952 35 H 0.407 0.593 36 H 0.077 0.923 37 H 0.083 0.917 38 H 0.119 0.881 39 H 0.038 0.962 40 H 0.136 0.864 41 H 0.084 0.916 42 H 0.417 0.583 43 H 0.114 0.886 44 H 0.107 0.893 45 H 0.103 0.897 46 H 0.106 0.894 47 H 0.111 0.889 48 H 0.035 0.965 49 H 0.097 0.903 50 H 0.079 0.921 51 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.755 -31.833 10.096 38.801 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.201 4.201 3 Si 0.792 3.208 4 H -0.199 1.199 5 H -0.210 1.210 6 H -0.185 1.185 7 C -0.580 4.580 8 H 0.084 0.916 9 C -0.014 4.014 10 C -0.138 4.138 11 C 0.025 3.975 12 N -0.391 5.391 13 C 0.402 3.598 14 O -0.518 6.518 15 N -0.366 5.366 16 C 0.007 3.993 17 C -0.076 4.076 18 N -0.258 5.258 19 C -0.090 4.090 20 C 0.301 3.699 21 O -0.441 6.441 22 N -0.345 5.345 23 C -0.050 4.050 24 C -0.224 4.224 25 C -0.215 4.215 26 C -0.083 4.083 27 C -0.005 4.005 28 H 0.072 0.928 29 H 0.011 0.989 30 H 0.012 0.988 31 H 0.086 0.914 32 H 0.085 0.915 33 H 0.065 0.935 34 H 0.067 0.933 35 H 0.246 0.754 36 H 0.095 0.905 37 H 0.101 0.899 38 H 0.137 0.863 39 H 0.056 0.944 40 H 0.154 0.846 41 H 0.102 0.898 42 H 0.254 0.746 43 H 0.132 0.868 44 H 0.126 0.874 45 H 0.122 0.878 46 H 0.125 0.875 47 H 0.129 0.871 48 H 0.053 0.947 49 H 0.115 0.885 50 H 0.097 0.903 51 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 19.170 -31.657 8.887 38.061 hybrid contribution -0.003 1.323 0.892 1.596 sum 19.167 -30.334 9.779 37.191 Atomic orbital electron populations 1.70115 1.07905 1.27767 1.51625 1.26019 0.95759 1.03516 0.94765 0.85410 0.78670 0.78287 0.78431 1.19877 1.20959 1.18467 1.21674 0.93743 0.92008 1.50542 0.91578 1.18938 0.94413 0.92840 0.95181 1.21591 0.98484 0.91756 1.02011 1.21094 0.91309 0.84568 1.00515 1.45248 1.10763 1.03765 1.79289 1.16057 0.84684 0.81358 0.77694 1.90866 1.16405 1.84482 1.60013 1.47409 1.06131 1.06015 1.77089 1.21644 0.99395 0.79092 0.99126 1.22512 0.85935 1.02706 0.96412 1.61542 1.06257 1.10355 1.47631 1.22040 0.89863 1.02509 0.94634 1.20953 0.89209 0.77420 0.82294 1.90682 1.79156 1.45432 1.28784 1.45264 1.05749 1.55552 1.27892 1.21562 0.79970 1.01731 1.01730 1.23492 1.03174 0.92779 1.02985 1.23461 1.00820 1.02109 0.95108 1.22514 1.01741 0.87593 0.96459 1.21804 0.78405 1.00619 0.99627 0.92823 0.98907 0.98778 0.91397 0.91542 0.93538 0.93323 0.75424 0.90451 0.89857 0.86327 0.94358 0.84650 0.89790 0.74626 0.86821 0.87441 0.87837 0.87515 0.87112 0.94679 0.88485 0.90304 0.89208 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.55 13.29 21.45 0.28 -57.27 16 2 C 0.00 -0.17 5.46 84.65 0.46 0.29 16 3 Si 0.97 44.26 29.54 68.60 2.03 46.29 16 4 H -0.27 -12.11 7.11 99.48 0.71 -11.41 16 5 H -0.28 -12.78 7.11 99.48 0.71 -12.07 16 6 H -0.26 -11.26 7.11 99.48 0.71 -10.55 16 7 C -0.54 -30.67 9.11 25.60 0.23 -30.43 16 8 H 0.07 3.52 7.74 -2.91 -0.02 3.49 16 9 C 0.02 1.27 4.97 29.84 0.15 1.42 16 10 C -0.10 -4.02 5.27 30.59 0.16 -3.86 16 11 C 0.15 5.65 5.68 86.38 0.49 6.14 16 12 N -0.73 -22.82 5.47 -478.55 -2.62 -25.44 16 13 C 0.70 23.20 8.31 179.05 1.49 24.69 16 14 O -0.64 -26.50 15.83 -3.97 -0.06 -26.56 16 15 N -0.63 -15.64 3.01 -835.95 -2.52 -18.16 16 16 C 0.13 2.68 6.58 86.35 0.57 3.24 16 17 C 0.05 0.73 5.62 86.38 0.49 1.21 16 18 N -0.53 -8.00 4.37 -899.83 -3.93 -11.93 16 19 C 0.04 0.35 5.45 85.56 0.47 0.82 16 20 C 0.51 7.09 7.49 87.66 0.66 7.75 16 21 O -0.56 -12.99 13.90 -3.01 -0.04 -13.03 16 22 N -0.69 -5.71 5.57 -442.52 -2.46 -8.17 16 23 C 0.06 0.57 6.43 44.99 0.29 0.86 16 24 C -0.19 -1.14 10.46 30.62 0.32 -0.82 16 25 C -0.18 -0.97 10.46 30.62 0.32 -0.65 16 26 C 0.05 0.81 5.26 86.38 0.45 1.26 16 27 C 0.12 2.36 6.59 86.35 0.57 2.92 16 28 H 0.26 15.23 8.31 -92.71 -0.77 14.46 16 29 H -0.01 -0.43 8.14 -2.39 -0.02 -0.45 16 30 H -0.01 -0.36 8.14 -2.38 -0.02 -0.37 16 31 H 0.07 2.53 8.14 -2.39 -0.02 2.51 16 32 H 0.07 2.51 8.14 -2.39 -0.02 2.49 16 33 H 0.05 1.91 8.14 -2.39 -0.02 1.89 16 34 H 0.05 1.95 8.14 -2.39 -0.02 1.93 16 35 H 0.41 10.20 5.97 -92.70 -0.55 9.65 16 36 H 0.08 1.50 8.14 -2.39 -0.02 1.48 16 37 H 0.08 1.98 7.11 -2.39 -0.02 1.96 16 38 H 0.12 0.95 7.99 -2.39 -0.02 0.93 16 39 H 0.04 0.57 8.14 -2.39 -0.02 0.56 16 40 H 0.14 0.44 7.97 -2.39 -0.02 0.42 16 41 H 0.08 0.49 8.12 -2.39 -0.02 0.47 16 42 H 0.42 0.66 8.83 -92.71 -0.82 -0.15 16 43 H 0.11 1.72 7.40 -2.39 -0.02 1.71 16 44 H 0.11 0.44 8.14 -2.38 -0.02 0.42 16 45 H 0.10 0.61 8.14 -2.39 -0.02 0.60 16 46 H 0.11 0.53 8.14 -2.38 -0.02 0.52 16 47 H 0.11 0.32 8.14 -2.39 -0.02 0.30 16 48 H 0.04 0.62 8.14 -2.39 -0.02 0.61 16 49 H 0.10 1.91 5.77 -2.38 -0.01 1.90 16 50 H 0.08 1.61 8.14 -2.38 -0.02 1.59 16 51 H 0.09 1.60 5.63 -2.39 -0.01 1.59 16 Total: -1.00 -80.32 410.25 -2.65 -82.96 By element: Atomic # 1 Polarization: 16.89 SS G_CDS: -0.44 Total: 16.45 kcal Atomic # 6 Polarization: 7.74 SS G_CDS: 7.11 Total: 14.85 kcal Atomic # 7 Polarization: -109.72 SS G_CDS: -11.24 Total: -120.96 kcal Atomic # 8 Polarization: -39.49 SS G_CDS: -0.10 Total: -39.60 kcal Atomic # 14 Polarization: 44.26 SS G_CDS: 2.03 Total: 46.29 kcal Total: -80.32 -2.65 -82.96 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000171450027.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.142 kcal (2) G-P(sol) polarization free energy of solvation -80.318 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.176 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.646 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.964 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.822 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds