Wall clock time and date at job start Tue Mar 31 2020 22:03:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45198 * 1 3 3 C 1.34224 * 117.00123 * 2 1 4 4 O 1.20825 * 119.99854 * 359.97438 * 3 2 1 5 5 C 1.50703 * 120.00120 * 180.02562 * 3 2 1 6 6 N 1.46502 * 109.47126 * 179.97438 * 5 3 2 7 7 C 1.36932 * 119.99955 * 264.00747 * 6 5 3 8 8 H 1.07995 * 120.00192 * 196.22266 * 7 6 5 9 9 C 1.38819 * 120.00312 * 16.22708 * 7 6 5 10 10 N 1.31624 * 119.99727 * 22.11554 * 9 7 6 11 11 Si 1.86796 * 120.00021 * 202.12348 * 9 7 6 12 12 H 1.48500 * 109.47244 * 60.00053 * 11 9 7 13 13 H 1.48500 * 109.46821 * 179.97438 * 11 9 7 14 14 H 1.48499 * 109.47096 * 299.99424 * 11 9 7 15 15 C 1.46497 * 119.99790 * 84.01049 * 6 5 3 16 16 C 1.50696 * 109.47174 * 90.00168 * 15 6 5 17 17 O 1.21282 * 119.99865 * 359.97438 * 16 15 6 18 18 N 1.34776 * 120.00020 * 179.72647 * 16 15 6 19 19 C 1.47106 * 120.91457 * 359.97438 * 18 16 15 20 20 C 1.52683 * 109.35630 * 233.34817 * 19 18 16 21 21 C 1.53172 * 109.77426 * 306.40499 * 20 19 18 22 22 C 1.52784 * 109.17660 * 60.56156 * 21 20 19 23 23 H 1.09007 * 109.12725 * 57.53496 * 22 21 20 24 24 C 1.52796 * 110.70473 * 177.97908 * 22 21 20 25 25 C 1.53149 * 109.02929 * 181.02948 * 24 22 21 26 26 C 1.52917 * 109.86304 * 300.44150 * 25 24 22 27 27 C 1.53147 * 109.84867 * 59.06766 * 26 25 24 28 28 C 1.46693 * 120.91202 * 180.27295 * 18 16 15 29 29 H 1.08996 * 109.49990 * 245.00008 * 28 18 16 30 30 H 1.08995 * 109.47352 * 60.00197 * 1 2 3 31 31 H 1.08997 * 109.47431 * 180.02562 * 1 2 3 32 32 H 1.09001 * 109.47358 * 300.00200 * 1 2 3 33 33 H 1.09006 * 109.46981 * 59.99789 * 5 3 2 34 34 H 1.09003 * 109.46960 * 299.99883 * 5 3 2 35 35 H 0.96998 * 119.99736 * 180.02562 * 10 9 7 36 36 H 1.08997 * 109.47161 * 329.99748 * 15 6 5 37 37 H 1.09001 * 109.46979 * 209.99717 * 15 6 5 38 38 H 1.09001 * 109.52598 * 353.28628 * 19 18 16 39 39 H 1.08993 * 109.52875 * 113.50049 * 19 18 16 40 40 H 1.08998 * 109.49730 * 186.24830 * 20 19 18 41 41 H 1.08997 * 109.29114 * 66.43486 * 20 19 18 42 42 H 1.09003 * 109.51747 * 300.65653 * 21 20 19 43 43 H 1.08992 * 109.57007 * 180.50388 * 21 20 19 44 44 H 1.08990 * 109.54466 * 61.16396 * 24 22 21 45 45 H 1.09004 * 109.61733 * 300.93905 * 24 22 21 46 46 H 1.09003 * 109.40671 * 180.32094 * 25 24 22 47 47 H 1.09004 * 109.40596 * 60.55788 * 25 24 22 48 48 H 1.08997 * 109.40530 * 298.95319 * 26 25 24 49 49 H 1.09002 * 109.40666 * 179.18744 * 26 25 24 50 50 H 1.09003 * 109.54409 * 180.55340 * 27 26 25 51 51 H 1.09000 * 109.62322 * 60.33284 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1959 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5663 1.2748 -0.0006 6 7 3.9817 2.6797 -0.0011 7 6 4.2941 3.3009 -1.1807 8 1 4.8422 4.2313 -1.1725 9 6 3.9062 2.7346 -2.3874 10 7 2.9042 1.8819 -2.4222 11 14 4.8064 3.1828 -3.9616 12 1 6.2388 2.8120 -3.8354 13 1 4.2040 2.4477 -5.1026 14 1 4.6923 4.6443 -4.1981 15 6 4.0629 3.4199 1.2605 16 6 5.4458 3.2732 1.8409 17 8 6.2812 2.6147 1.2583 18 7 5.7558 3.8778 3.0049 19 6 4.7600 4.6861 3.7253 20 6 5.3398 6.0702 4.0072 21 6 6.6856 5.9317 4.7255 22 6 7.6543 5.1589 3.8317 23 1 7.7553 5.6803 2.8798 24 6 9.0261 5.0435 4.4948 25 6 9.9717 4.2867 3.5575 26 6 9.4137 2.8919 3.2720 27 6 8.0282 3.0074 2.6300 28 6 7.0974 3.7533 3.5849 29 1 7.0367 3.2129 4.5295 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3634 -1.0276 0.0005 32 1 -0.3634 0.5139 0.8900 33 1 3.9557 0.7808 -0.8909 34 1 3.9564 0.7805 0.8892 35 1 2.6334 1.4860 -3.2652 36 1 3.3301 3.0226 1.9627 37 1 3.8559 4.4743 1.0771 38 1 3.8620 4.7861 3.1157 39 1 4.5094 4.2002 4.6681 40 1 4.6495 6.6327 4.6358 41 1 5.4843 6.5988 3.0650 42 1 6.5448 5.3920 5.6620 43 1 7.0922 6.9214 4.9330 44 1 8.9321 4.4999 5.4348 45 1 9.4242 6.0397 4.6879 46 1 10.9511 4.1958 4.0272 47 1 10.0699 4.8361 2.6212 48 1 9.3350 2.3352 4.2058 49 1 10.0847 2.3653 2.5933 50 1 7.6311 2.0107 2.4377 51 1 8.1042 3.5569 1.6917 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000177620135.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:03:07 Heat of formation + Delta-G solvation = -93.160546 kcal Electronic energy + Delta-G solvation = -31835.166248 eV Core-core repulsion = 27735.475723 eV Total energy + Delta-G solvation = -4099.690525 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.204 amu Computer time = 1.35 seconds Orbital eigenvalues (eV) -40.49584 -38.98494 -37.84735 -35.83407 -35.69783 -34.46854 -32.88490 -31.51024 -30.32886 -29.88070 -28.37529 -26.78020 -25.91486 -25.05059 -23.04949 -22.70910 -21.89730 -20.48201 -19.89617 -19.80297 -18.52011 -16.93431 -16.44405 -15.97690 -15.92055 -15.37614 -15.26027 -15.05149 -14.88284 -14.63386 -14.47145 -14.20131 -13.74843 -13.52415 -13.34207 -13.26329 -12.80627 -12.55160 -12.46608 -12.29696 -12.17742 -11.98150 -11.74406 -11.38456 -11.31165 -11.16935 -11.13668 -11.01059 -10.89623 -10.79658 -10.69190 -10.55772 -10.44436 -10.30046 -10.11870 -9.97419 -9.90600 -9.64395 -9.25487 -8.67147 -8.33789 -8.14276 -7.02644 -5.89574 -3.21135 3.29209 3.38247 3.42778 3.46580 3.50675 3.83330 4.02376 4.48870 4.54876 4.68799 4.73004 4.94459 5.10921 5.11592 5.15523 5.21424 5.32062 5.34067 5.42129 5.50172 5.53333 5.62207 5.66068 5.69765 5.77462 5.78742 5.80243 5.84379 5.88073 5.92978 6.04388 6.05931 6.06895 6.08697 6.14044 6.21860 6.25135 6.28961 6.32128 6.35831 6.63786 6.70209 6.73470 7.05390 7.09070 7.66301 7.75442 7.90644 8.17537 8.93553 9.03217 9.34489 9.70321 10.11521 11.21801 Molecular weight = 338.20amu Principal moments of inertia in cm(-1) A = 0.012363 B = 0.003753 C = 0.003313 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2264.293007 B = 7458.078570 C = 8450.798269 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.042 3.958 2 O -0.381 6.381 3 C 0.465 3.535 4 O -0.507 6.507 5 C 0.193 3.807 6 N -0.542 5.542 7 C -0.248 4.248 8 H 0.076 0.924 9 C 0.004 3.996 10 N -0.903 5.903 11 Si 0.910 3.090 12 H -0.282 1.282 13 H -0.291 1.291 14 H -0.284 1.284 15 C 0.134 3.866 16 C 0.484 3.516 17 O -0.511 6.511 18 N -0.622 5.622 19 C 0.110 3.890 20 C -0.136 4.136 21 C -0.112 4.112 22 C -0.101 4.101 23 H 0.072 0.928 24 C -0.108 4.108 25 C -0.120 4.120 26 C -0.127 4.127 27 C -0.105 4.105 28 C 0.154 3.846 29 H 0.060 0.940 30 H 0.053 0.947 31 H 0.080 0.920 32 H 0.045 0.955 33 H 0.116 0.884 34 H 0.051 0.949 35 H 0.258 0.742 36 H 0.066 0.934 37 H 0.081 0.919 38 H 0.087 0.913 39 H 0.061 0.939 40 H 0.072 0.928 41 H 0.067 0.933 42 H 0.061 0.939 43 H 0.061 0.939 44 H 0.060 0.940 45 H 0.060 0.940 46 H 0.056 0.944 47 H 0.060 0.940 48 H 0.055 0.945 49 H 0.061 0.939 50 H 0.089 0.911 51 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.050 3.556 15.946 17.422 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.053 4.053 2 O -0.299 6.299 3 C 0.305 3.695 4 O -0.393 6.393 5 C 0.063 3.937 6 N -0.259 5.259 7 C -0.376 4.376 8 H 0.094 0.906 9 C -0.194 4.194 10 N -0.548 5.548 11 Si 0.740 3.260 12 H -0.209 1.209 13 H -0.217 1.217 14 H -0.210 1.210 15 C 0.002 3.998 16 C 0.271 3.729 17 O -0.385 6.385 18 N -0.359 5.359 19 C -0.013 4.013 20 C -0.174 4.174 21 C -0.149 4.149 22 C -0.121 4.121 23 H 0.091 0.909 24 C -0.146 4.146 25 C -0.158 4.158 26 C -0.165 4.165 27 C -0.142 4.142 28 C 0.051 3.949 29 H 0.078 0.922 30 H 0.072 0.928 31 H 0.099 0.901 32 H 0.064 0.936 33 H 0.134 0.866 34 H 0.069 0.931 35 H 0.068 0.932 36 H 0.084 0.916 37 H 0.098 0.902 38 H 0.106 0.894 39 H 0.080 0.920 40 H 0.091 0.909 41 H 0.086 0.914 42 H 0.080 0.920 43 H 0.080 0.920 44 H 0.079 0.921 45 H 0.079 0.921 46 H 0.075 0.925 47 H 0.079 0.921 48 H 0.073 0.927 49 H 0.080 0.920 50 H 0.107 0.893 51 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 6.166 3.410 15.391 16.928 hybrid contribution -0.002 0.495 -0.880 1.009 sum 6.164 3.905 14.512 16.243 Atomic orbital electron populations 1.22862 0.79769 1.01369 1.01265 1.86546 1.21002 1.36646 1.85683 1.25561 0.93523 0.80188 0.70178 1.90454 1.66733 1.36453 1.45623 1.20220 0.85061 0.86406 1.01978 1.43389 1.74077 1.06981 1.01471 1.19100 1.28855 1.07056 0.82600 0.90621 1.24769 0.96727 0.99928 0.97931 1.69863 1.24872 1.34058 1.26020 0.86241 0.79761 0.77739 0.82307 1.20872 1.21671 1.21031 1.20722 0.91018 0.98449 0.89570 1.22921 0.92870 0.78208 0.78900 1.90658 1.49434 1.39461 1.58921 1.48470 1.11732 1.51945 1.23767 1.21555 0.91871 0.90783 0.97108 1.21849 0.97107 0.97221 1.01246 1.21517 0.95064 1.00032 0.98334 1.21544 0.94411 0.96567 0.99544 0.90913 1.21497 0.94539 1.00081 0.98512 1.21558 0.98009 0.96646 0.99568 1.21738 0.97954 0.96303 1.00509 1.22000 0.92056 1.02736 0.97430 1.21097 0.82554 0.94841 0.96439 0.92205 0.92795 0.90101 0.93629 0.86584 0.93074 0.93201 0.91566 0.90152 0.89434 0.92035 0.90950 0.91408 0.92040 0.92003 0.92086 0.92090 0.92496 0.92099 0.92651 0.92015 0.89263 0.90885 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.75 10.56 101.05 1.07 1.81 16 2 O -0.38 -8.33 10.56 -39.24 -0.41 -8.75 16 3 C 0.47 11.39 6.17 36.01 0.22 11.61 16 4 O -0.51 -13.69 15.88 -18.75 -0.30 -13.98 16 5 C 0.19 4.66 5.49 -5.19 -0.03 4.63 16 6 N -0.54 -13.43 1.52 -175.98 -0.27 -13.69 16 7 C -0.25 -6.76 9.66 -15.06 -0.15 -6.91 16 8 H 0.08 2.06 7.92 -52.49 -0.42 1.64 16 9 C 0.00 0.12 4.86 -17.43 -0.08 0.03 16 10 N -0.90 -25.84 9.31 55.49 0.52 -25.32 16 11 Si 0.91 22.19 29.61 -169.99 -5.03 17.16 16 12 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 13 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 14 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 15 C 0.13 2.70 4.48 -5.20 -0.02 2.68 16 16 C 0.48 9.14 7.70 -10.99 -0.08 9.06 16 17 O -0.51 -11.26 12.04 5.56 0.07 -11.19 16 18 N -0.62 -9.18 2.98 -165.69 -0.49 -9.67 16 19 C 0.11 1.27 6.32 -3.87 -0.02 1.25 16 20 C -0.14 -1.34 6.05 -26.80 -0.16 -1.50 16 21 C -0.11 -1.05 5.27 -26.75 -0.14 -1.19 16 22 C -0.10 -1.13 2.01 -90.73 -0.18 -1.31 16 23 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 24 C -0.11 -1.04 5.30 -26.76 -0.14 -1.18 16 25 C -0.12 -1.24 5.91 -26.70 -0.16 -1.40 16 26 C -0.13 -1.50 5.91 -26.70 -0.16 -1.66 16 27 C -0.10 -1.57 3.66 -26.77 -0.10 -1.67 16 28 C 0.15 2.06 2.65 -67.83 -0.18 1.88 16 29 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 30 H 0.05 1.02 8.13 -51.93 -0.42 0.59 16 31 H 0.08 1.11 8.14 -51.93 -0.42 0.69 16 32 H 0.04 0.75 8.13 -51.93 -0.42 0.33 16 33 H 0.12 3.07 6.35 -51.93 -0.33 2.74 16 34 H 0.05 1.11 8.12 -51.93 -0.42 0.69 16 35 H 0.26 7.27 8.31 -40.82 -0.34 6.93 16 36 H 0.07 1.24 7.90 -51.93 -0.41 0.83 16 37 H 0.08 1.58 7.59 -51.93 -0.39 1.19 16 38 H 0.09 1.02 5.98 -51.93 -0.31 0.71 16 39 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 40 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 41 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 42 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 43 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 44 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 45 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 46 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 47 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 48 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 49 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 50 H 0.09 1.57 6.40 -51.93 -0.33 1.24 16 51 H 0.07 1.30 7.23 -51.93 -0.38 0.92 16 LS Contribution 391.27 15.07 5.90 5.90 Total: -1.00 -32.56 391.27 -9.24 -41.80 By element: Atomic # 1 Polarization: 10.51 SS G_CDS: -8.89 Total: 1.62 kcal Atomic # 6 Polarization: 16.45 SS G_CDS: -0.32 Total: 16.13 kcal Atomic # 7 Polarization: -48.44 SS G_CDS: -0.24 Total: -48.69 kcal Atomic # 8 Polarization: -33.27 SS G_CDS: -0.65 Total: -33.92 kcal Atomic # 14 Polarization: 22.19 SS G_CDS: -5.03 Total: 17.16 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -32.56 -9.24 -41.80 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000177620135.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.360 kcal (2) G-P(sol) polarization free energy of solvation -32.564 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.923 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.237 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.801 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.161 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.35 seconds