Wall clock time and date at job start Tue Mar 31 2020 22:03:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45198 * 1 3 3 C 1.34224 * 117.00123 * 2 1 4 4 O 1.20825 * 119.99854 * 359.97438 * 3 2 1 5 5 C 1.50703 * 120.00120 * 180.02562 * 3 2 1 6 6 N 1.46502 * 109.47126 * 179.97438 * 5 3 2 7 7 C 1.36932 * 119.99955 * 264.00747 * 6 5 3 8 8 H 1.07995 * 120.00192 * 196.22266 * 7 6 5 9 9 C 1.38819 * 120.00312 * 16.22708 * 7 6 5 10 10 N 1.31624 * 119.99727 * 22.11554 * 9 7 6 11 11 Si 1.86796 * 120.00021 * 202.12348 * 9 7 6 12 12 H 1.48500 * 109.47244 * 60.00053 * 11 9 7 13 13 H 1.48500 * 109.46821 * 179.97438 * 11 9 7 14 14 H 1.48499 * 109.47096 * 299.99424 * 11 9 7 15 15 C 1.46497 * 119.99790 * 84.01049 * 6 5 3 16 16 C 1.50696 * 109.47174 * 90.00168 * 15 6 5 17 17 O 1.21282 * 119.99865 * 359.97438 * 16 15 6 18 18 N 1.34776 * 120.00020 * 179.72647 * 16 15 6 19 19 C 1.47106 * 120.91457 * 359.97438 * 18 16 15 20 20 C 1.52683 * 109.35630 * 233.34817 * 19 18 16 21 21 C 1.53172 * 109.77426 * 306.40499 * 20 19 18 22 22 C 1.52784 * 109.17660 * 60.56156 * 21 20 19 23 23 H 1.09007 * 109.12725 * 57.53496 * 22 21 20 24 24 C 1.52796 * 110.70473 * 177.97908 * 22 21 20 25 25 C 1.53149 * 109.02929 * 181.02948 * 24 22 21 26 26 C 1.52917 * 109.86304 * 300.44150 * 25 24 22 27 27 C 1.53147 * 109.84867 * 59.06766 * 26 25 24 28 28 C 1.46693 * 120.91202 * 180.27295 * 18 16 15 29 29 H 1.08996 * 109.49990 * 245.00008 * 28 18 16 30 30 H 1.08995 * 109.47352 * 60.00197 * 1 2 3 31 31 H 1.08997 * 109.47431 * 180.02562 * 1 2 3 32 32 H 1.09001 * 109.47358 * 300.00200 * 1 2 3 33 33 H 1.09006 * 109.46981 * 59.99789 * 5 3 2 34 34 H 1.09003 * 109.46960 * 299.99883 * 5 3 2 35 35 H 0.96998 * 119.99736 * 180.02562 * 10 9 7 36 36 H 1.08997 * 109.47161 * 329.99748 * 15 6 5 37 37 H 1.09001 * 109.46979 * 209.99717 * 15 6 5 38 38 H 1.09001 * 109.52598 * 353.28628 * 19 18 16 39 39 H 1.08993 * 109.52875 * 113.50049 * 19 18 16 40 40 H 1.08998 * 109.49730 * 186.24830 * 20 19 18 41 41 H 1.08997 * 109.29114 * 66.43486 * 20 19 18 42 42 H 1.09003 * 109.51747 * 300.65653 * 21 20 19 43 43 H 1.08992 * 109.57007 * 180.50388 * 21 20 19 44 44 H 1.08990 * 109.54466 * 61.16396 * 24 22 21 45 45 H 1.09004 * 109.61733 * 300.93905 * 24 22 21 46 46 H 1.09003 * 109.40671 * 180.32094 * 25 24 22 47 47 H 1.09004 * 109.40596 * 60.55788 * 25 24 22 48 48 H 1.08997 * 109.40530 * 298.95319 * 26 25 24 49 49 H 1.09002 * 109.40666 * 179.18744 * 26 25 24 50 50 H 1.09003 * 109.54409 * 180.55340 * 27 26 25 51 51 H 1.09000 * 109.62322 * 60.33284 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1959 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5663 1.2748 -0.0006 6 7 3.9817 2.6797 -0.0011 7 6 4.2941 3.3009 -1.1807 8 1 4.8422 4.2313 -1.1725 9 6 3.9062 2.7346 -2.3874 10 7 2.9042 1.8819 -2.4222 11 14 4.8064 3.1828 -3.9616 12 1 6.2388 2.8120 -3.8354 13 1 4.2040 2.4477 -5.1026 14 1 4.6923 4.6443 -4.1981 15 6 4.0629 3.4199 1.2605 16 6 5.4458 3.2732 1.8409 17 8 6.2812 2.6147 1.2583 18 7 5.7558 3.8778 3.0049 19 6 4.7600 4.6861 3.7253 20 6 5.3398 6.0702 4.0072 21 6 6.6856 5.9317 4.7255 22 6 7.6543 5.1589 3.8317 23 1 7.7553 5.6803 2.8798 24 6 9.0261 5.0435 4.4948 25 6 9.9717 4.2867 3.5575 26 6 9.4137 2.8919 3.2720 27 6 8.0282 3.0074 2.6300 28 6 7.0974 3.7533 3.5849 29 1 7.0367 3.2129 4.5295 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3634 -1.0276 0.0005 32 1 -0.3634 0.5139 0.8900 33 1 3.9557 0.7808 -0.8909 34 1 3.9564 0.7805 0.8892 35 1 2.6334 1.4860 -3.2652 36 1 3.3301 3.0226 1.9627 37 1 3.8559 4.4743 1.0771 38 1 3.8620 4.7861 3.1157 39 1 4.5094 4.2002 4.6681 40 1 4.6495 6.6327 4.6358 41 1 5.4843 6.5988 3.0650 42 1 6.5448 5.3920 5.6620 43 1 7.0922 6.9214 4.9330 44 1 8.9321 4.4999 5.4348 45 1 9.4242 6.0397 4.6879 46 1 10.9511 4.1958 4.0272 47 1 10.0699 4.8361 2.6212 48 1 9.3350 2.3352 4.2058 49 1 10.0847 2.3653 2.5933 50 1 7.6311 2.0107 2.4377 51 1 8.1042 3.5569 1.6917 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000177620135.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:03:05 Heat of formation + Delta-G solvation = -110.793522 kcal Electronic energy + Delta-G solvation = -31835.930871 eV Core-core repulsion = 27735.475723 eV Total energy + Delta-G solvation = -4100.455148 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.204 amu Computer time = 1.36 seconds Orbital eigenvalues (eV) -41.69295 -40.82732 -39.17803 -37.50367 -36.85774 -36.37939 -33.98529 -33.44727 -31.44299 -30.96634 -30.04647 -28.38844 -27.67299 -26.12230 -24.52770 -23.67486 -23.32268 -21.76185 -21.38400 -20.85769 -19.84977 -18.88553 -18.20402 -17.50719 -17.40960 -16.96603 -16.77690 -16.49950 -16.44510 -15.82832 -15.58126 -15.44133 -15.15337 -15.03199 -14.76137 -14.42323 -14.06214 -13.97825 -13.83842 -13.61955 -13.47616 -13.32122 -12.99740 -12.84008 -12.76511 -12.70521 -12.61255 -12.37344 -12.24855 -12.11206 -12.06164 -11.99913 -11.81590 -11.67080 -11.44145 -11.40913 -11.34779 -11.19578 -10.81851 -10.61884 -9.95268 -9.35512 -8.95541 -7.99668 -5.31559 1.42368 1.47138 1.53878 1.86272 1.90623 2.07277 2.35244 2.51588 3.21895 3.47071 3.61805 3.76299 3.85541 4.04662 4.10408 4.22781 4.26567 4.29255 4.36343 4.37508 4.43803 4.44450 4.45626 4.50725 4.55984 4.61402 4.63520 4.69167 4.71699 4.86135 4.91624 4.93312 5.00259 5.03074 5.07059 5.13075 5.18223 5.19702 5.26821 5.35430 5.36362 5.45449 5.52996 5.55507 5.61584 5.88071 5.88803 6.13745 6.59331 6.95660 7.41587 7.49498 7.72676 8.08089 9.09556 Molecular weight = 338.20amu Principal moments of inertia in cm(-1) A = 0.012363 B = 0.003753 C = 0.003313 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2264.293007 B = 7458.078570 C = 8450.798269 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.038 3.962 2 O -0.385 6.385 3 C 0.471 3.529 4 O -0.537 6.537 5 C 0.195 3.805 6 N -0.559 5.559 7 C -0.253 4.253 8 H 0.068 0.932 9 C -0.043 4.043 10 N -0.925 5.925 11 Si 0.966 3.034 12 H -0.286 1.286 13 H -0.290 1.290 14 H -0.279 1.279 15 C 0.136 3.864 16 C 0.485 3.515 17 O -0.552 6.552 18 N -0.615 5.615 19 C 0.101 3.899 20 C -0.132 4.132 21 C -0.107 4.107 22 C -0.096 4.096 23 H 0.046 0.954 24 C -0.103 4.103 25 C -0.119 4.119 26 C -0.122 4.122 27 C -0.098 4.098 28 C 0.151 3.849 29 H 0.078 0.922 30 H 0.036 0.964 31 H 0.126 0.874 32 H 0.056 0.944 33 H 0.090 0.910 34 H 0.072 0.928 35 H 0.251 0.749 36 H 0.081 0.919 37 H 0.081 0.919 38 H 0.082 0.918 39 H 0.087 0.913 40 H 0.100 0.900 41 H 0.049 0.951 42 H 0.079 0.921 43 H 0.078 0.922 44 H 0.078 0.922 45 H 0.078 0.922 46 H 0.078 0.922 47 H 0.045 0.955 48 H 0.072 0.928 49 H 0.055 0.945 50 H 0.056 0.944 51 H 0.033 0.967 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.463 4.392 18.929 20.479 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 O -0.302 6.302 3 C 0.313 3.687 4 O -0.425 6.425 5 C 0.066 3.934 6 N -0.277 5.277 7 C -0.382 4.382 8 H 0.086 0.914 9 C -0.238 4.238 10 N -0.571 5.571 11 Si 0.795 3.205 12 H -0.213 1.213 13 H -0.216 1.216 14 H -0.205 1.205 15 C 0.006 3.994 16 C 0.272 3.728 17 O -0.429 6.429 18 N -0.350 5.350 19 C -0.021 4.021 20 C -0.170 4.170 21 C -0.144 4.144 22 C -0.116 4.116 23 H 0.064 0.936 24 C -0.140 4.140 25 C -0.156 4.156 26 C -0.160 4.160 27 C -0.135 4.135 28 C 0.049 3.951 29 H 0.096 0.904 30 H 0.055 0.945 31 H 0.144 0.856 32 H 0.075 0.925 33 H 0.108 0.892 34 H 0.090 0.910 35 H 0.061 0.939 36 H 0.099 0.901 37 H 0.099 0.901 38 H 0.100 0.900 39 H 0.105 0.895 40 H 0.118 0.882 41 H 0.068 0.932 42 H 0.098 0.902 43 H 0.097 0.903 44 H 0.096 0.904 45 H 0.097 0.903 46 H 0.097 0.903 47 H 0.064 0.936 48 H 0.091 0.909 49 H 0.073 0.927 50 H 0.074 0.926 51 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges 6.580 4.274 18.442 20.042 hybrid contribution -0.164 0.201 -1.718 1.738 sum 6.416 4.474 16.724 18.463 Atomic orbital electron populations 1.23205 0.77085 1.04313 1.01007 1.86493 1.23567 1.35078 1.85098 1.25423 0.93560 0.80385 0.69331 1.90425 1.67399 1.37527 1.47167 1.20095 0.85343 0.86392 1.01580 1.43463 1.74662 1.07357 1.02217 1.19255 1.28164 1.06830 0.83989 0.91432 1.25405 0.97479 1.00573 1.00328 1.69992 1.25941 1.35217 1.25930 0.85353 0.78268 0.77574 0.79298 1.21252 1.21631 1.20468 1.20818 0.92333 0.98005 0.88243 1.22425 0.91819 0.78500 0.80048 1.90669 1.50141 1.41540 1.60582 1.48420 1.13218 1.50923 1.22483 1.21866 0.90952 0.91696 0.97573 1.21842 0.98212 0.95883 1.01100 1.21518 0.93876 1.00824 0.98210 1.21499 0.96167 0.94720 0.99185 0.93581 1.21491 0.92870 1.01181 0.98499 1.21553 0.99344 0.95261 0.99472 1.21679 0.95687 0.97854 1.00738 1.21753 0.94617 1.00473 0.96700 1.21264 0.81251 0.96528 0.96104 0.90370 0.94485 0.85580 0.92482 0.89234 0.91015 0.93932 0.90103 0.90124 0.89969 0.89478 0.88160 0.93226 0.90248 0.90296 0.90352 0.90315 0.90330 0.93626 0.90928 0.92661 0.92559 0.94787 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.29 10.56 113.37 1.20 2.48 16 2 O -0.39 -16.73 10.56 -51.36 -0.54 -17.27 16 3 C 0.47 23.38 6.17 71.24 0.44 23.82 16 4 O -0.54 -29.39 15.88 21.97 0.35 -29.04 16 5 C 0.20 9.73 5.49 85.63 0.47 10.20 16 6 N -0.56 -28.59 1.52 -710.69 -1.08 -29.67 16 7 C -0.25 -14.30 9.66 84.04 0.81 -13.49 16 8 H 0.07 3.83 7.92 -2.91 -0.02 3.80 16 9 C -0.04 -2.43 4.86 84.86 0.41 -2.02 16 10 N -0.92 -54.41 9.31 21.65 0.20 -54.21 16 11 Si 0.97 47.00 29.61 68.60 2.03 49.03 16 12 H -0.29 -13.93 7.11 99.48 0.71 -13.22 16 13 H -0.29 -13.98 7.11 99.48 0.71 -13.27 16 14 H -0.28 -13.19 7.11 99.48 0.71 -12.48 16 15 C 0.14 5.62 4.48 85.63 0.38 6.00 16 16 C 0.49 18.87 7.70 87.66 0.68 19.54 16 17 O -0.55 -25.65 12.04 -3.04 -0.04 -25.69 16 18 N -0.62 -17.88 2.98 -796.50 -2.37 -20.25 16 19 C 0.10 2.13 6.32 86.16 0.54 2.67 16 20 C -0.13 -2.25 6.05 30.55 0.18 -2.06 16 21 C -0.11 -1.61 5.27 30.58 0.16 -1.45 16 22 C -0.10 -1.96 2.01 -10.87 -0.02 -1.98 16 23 H 0.05 1.19 8.14 -2.38 -0.02 1.17 16 24 C -0.10 -1.63 5.30 30.58 0.16 -1.46 16 25 C -0.12 -2.24 5.91 30.62 0.18 -2.06 16 26 C -0.12 -2.80 5.91 30.62 0.18 -2.62 16 27 C -0.10 -3.04 3.66 30.57 0.11 -2.92 16 28 C 0.15 3.88 2.65 44.95 0.12 3.99 16 29 H 0.08 1.77 8.14 -2.39 -0.02 1.75 16 30 H 0.04 1.38 8.13 -2.39 -0.02 1.36 16 31 H 0.13 3.11 8.14 -2.39 -0.02 3.09 16 32 H 0.06 1.80 8.13 -2.39 -0.02 1.78 16 33 H 0.09 4.94 6.35 -2.38 -0.02 4.93 16 34 H 0.07 3.19 8.12 -2.39 -0.02 3.17 16 35 H 0.25 14.57 8.31 -92.71 -0.77 13.80 16 36 H 0.08 3.05 7.90 -2.39 -0.02 3.03 16 37 H 0.08 3.27 7.59 -2.39 -0.02 3.25 16 38 H 0.08 1.83 5.98 -2.39 -0.01 1.81 16 39 H 0.09 1.45 8.14 -2.39 -0.02 1.43 16 40 H 0.10 1.20 8.14 -2.39 -0.02 1.18 16 41 H 0.05 1.03 8.14 -2.39 -0.02 1.01 16 42 H 0.08 0.98 8.14 -2.39 -0.02 0.96 16 43 H 0.08 0.99 8.14 -2.39 -0.02 0.97 16 44 H 0.08 1.03 8.14 -2.39 -0.02 1.01 16 45 H 0.08 1.03 8.14 -2.39 -0.02 1.01 16 46 H 0.08 1.18 8.14 -2.39 -0.02 1.16 16 47 H 0.04 0.99 8.14 -2.38 -0.02 0.97 16 48 H 0.07 1.43 8.14 -2.39 -0.02 1.42 16 49 H 0.05 1.32 8.14 -2.39 -0.02 1.30 16 50 H 0.06 2.10 6.40 -2.39 -0.02 2.09 16 51 H 0.03 1.29 7.23 -2.39 -0.02 1.28 16 Total: -1.00 -74.14 391.27 5.46 -68.68 By element: Atomic # 1 Polarization: 18.86 SS G_CDS: 0.90 Total: 19.76 kcal Atomic # 6 Polarization: 32.64 SS G_CDS: 6.01 Total: 38.65 kcal Atomic # 7 Polarization: -100.88 SS G_CDS: -3.25 Total: -104.13 kcal Atomic # 8 Polarization: -71.77 SS G_CDS: -0.23 Total: -72.00 kcal Atomic # 14 Polarization: 47.00 SS G_CDS: 2.03 Total: 49.03 kcal Total: -74.14 5.46 -68.68 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000177620135.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.115 kcal (2) G-P(sol) polarization free energy of solvation -74.140 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.255 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.462 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.678 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.794 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.36 seconds