Wall clock time and date at job start Tue Mar 31 2020 22:03:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45195 * 1 3 3 C 1.34234 * 117.00129 * 2 1 4 4 O 1.20832 * 119.99476 * 359.97438 * 3 2 1 5 5 C 1.50694 * 120.00102 * 180.02562 * 3 2 1 6 6 N 1.46506 * 109.46869 * 185.68200 * 5 3 2 7 7 C 1.36938 * 119.99984 * 263.63849 * 6 5 3 8 8 H 1.07998 * 120.00231 * 146.24270 * 7 6 5 9 9 C 1.38813 * 119.99889 * 326.24740 * 7 6 5 10 10 N 1.31627 * 120.00008 * 157.74505 * 9 7 6 11 11 Si 1.86799 * 120.00132 * 337.74758 * 9 7 6 12 12 H 1.48497 * 109.47209 * 95.39459 * 11 9 7 13 13 H 1.48502 * 109.47094 * 215.39351 * 11 9 7 14 14 H 1.48500 * 109.46765 * 335.39078 * 11 9 7 15 15 C 1.46500 * 120.00147 * 83.63924 * 6 5 3 16 16 C 1.50705 * 109.46681 * 90.35653 * 15 6 5 17 17 O 1.21280 * 120.00157 * 4.52630 * 16 15 6 18 18 N 1.34777 * 119.99659 * 184.52094 * 16 15 6 19 19 C 1.46942 * 120.78664 * 0.02562 * 18 16 15 20 20 C 1.53158 * 108.94639 * 126.08190 * 19 18 16 21 21 C 1.53101 * 109.42690 * 54.27992 * 20 19 18 22 22 C 1.52885 * 109.41630 * 299.18051 * 21 20 19 23 23 H 1.09003 * 109.25667 * 302.15493 * 22 21 20 24 24 C 1.52658 * 110.11609 * 182.14904 * 22 21 20 25 25 C 1.52985 * 109.79115 * 298.26219 * 24 22 21 26 26 C 1.53041 * 109.25209 * 300.15569 * 25 24 22 27 27 C 1.52925 * 109.33620 * 60.52831 * 26 25 24 28 28 C 1.47201 * 120.78432 * 179.72620 * 18 16 15 29 29 H 1.09000 * 109.96086 * 354.59237 * 28 18 16 30 30 H 1.09000 * 109.47031 * 180.02562 * 1 2 3 31 31 H 1.08999 * 109.47420 * 300.00226 * 1 2 3 32 32 H 1.08997 * 109.47442 * 60.00343 * 1 2 3 33 33 H 1.08996 * 109.47328 * 65.68298 * 5 3 2 34 34 H 1.09000 * 109.47337 * 305.67452 * 5 3 2 35 35 H 0.96998 * 119.99813 * 179.97438 * 10 9 7 36 36 H 1.08999 * 109.47211 * 210.35643 * 15 6 5 37 37 H 1.08999 * 109.46937 * 330.36004 * 15 6 5 38 38 H 1.08996 * 109.56168 * 245.92150 * 19 18 16 39 39 H 1.09000 * 109.55686 * 6.24938 * 19 18 16 40 40 H 1.09005 * 109.48108 * 174.26375 * 20 19 18 41 41 H 1.08999 * 109.48090 * 294.29271 * 20 19 18 42 42 H 1.09002 * 109.47551 * 59.16617 * 21 20 19 43 43 H 1.08998 * 109.48281 * 179.19750 * 21 20 19 44 44 H 1.08994 * 109.41622 * 58.35632 * 24 22 21 45 45 H 1.08997 * 109.42153 * 178.16546 * 24 22 21 46 46 H 1.09000 * 109.50462 * 60.09056 * 25 24 22 47 47 H 1.08997 * 109.50623 * 180.22374 * 25 24 22 48 48 H 1.08997 * 109.49417 * 180.48661 * 26 25 24 49 49 H 1.09003 * 109.49493 * 300.57465 * 26 25 24 50 50 H 1.09001 * 109.43451 * 59.62901 * 27 26 25 51 51 H 1.09000 * 109.43025 * 179.48241 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4032 2.2094 -0.0005 5 6 3.5663 1.2749 -0.0006 6 7 3.9820 2.6730 0.1363 7 6 4.2957 3.4062 -0.9769 8 1 4.0758 4.4631 -1.0071 9 6 4.8963 2.7908 -2.0667 10 7 4.8075 3.3356 -3.2616 11 14 5.8306 1.1896 -1.8373 12 1 4.9353 0.0456 -2.1453 13 1 6.9999 1.1634 -2.7524 14 1 6.2995 1.0871 -0.4320 15 6 4.0621 3.2868 1.4641 16 6 5.4471 3.0912 2.0251 17 8 6.3079 2.5707 1.3476 18 7 5.7292 3.4949 3.2796 19 6 4.6994 4.1271 4.1157 20 6 4.6015 3.3685 5.4426 21 6 5.9862 3.2970 6.0917 22 6 6.9441 2.5486 5.1644 23 1 6.5471 1.5532 4.9650 24 6 8.3170 2.4213 5.8197 25 6 8.9046 3.8123 6.0655 26 6 9.0409 4.5458 4.7294 27 6 7.6605 4.6890 4.0871 28 6 7.0744 3.3070 3.8470 29 1 7.6950 2.7397 3.1533 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3634 0.5139 0.8899 32 1 -0.3634 0.5138 -0.8900 33 1 3.9509 0.8715 -0.9373 34 1 3.9608 0.6952 0.8339 35 1 5.2275 2.9058 -4.0230 36 1 3.8493 4.3529 1.3850 37 1 3.3329 2.8187 2.1253 38 1 4.9718 5.1648 4.3079 39 1 3.7387 4.0894 3.6022 40 1 3.9141 3.8894 6.1093 41 1 4.2340 2.3591 5.2580 42 1 6.3601 4.3065 6.2626 43 1 5.9150 2.7697 7.0430 44 1 8.2177 1.8968 6.7699 45 1 8.9809 1.8583 5.1637 46 1 8.2434 4.3754 6.7242 47 1 9.8861 3.7159 6.5297 48 1 9.4674 5.5345 4.8990 49 1 9.6930 3.9767 4.0668 50 1 7.0070 5.2519 4.7536 51 1 7.7546 5.2194 3.1396 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000177620152.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:03:10 Heat of formation + Delta-G solvation = -94.977724 kcal Electronic energy + Delta-G solvation = -31832.308389 eV Core-core repulsion = 27732.539066 eV Total energy + Delta-G solvation = -4099.769323 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.204 amu Computer time = 1.29 seconds Orbital eigenvalues (eV) -40.66397 -39.66683 -38.21638 -36.13331 -35.41219 -34.93592 -32.89774 -31.70966 -30.52626 -30.25275 -28.86163 -27.21617 -26.10168 -25.37161 -23.12213 -22.41147 -22.21914 -21.65298 -20.48562 -18.83832 -18.00083 -17.35054 -16.95330 -16.53831 -16.25388 -16.00944 -15.63136 -15.36390 -15.00920 -14.67251 -14.51684 -14.28575 -13.97678 -13.63526 -13.45417 -13.13275 -12.97312 -12.93824 -12.69916 -12.59992 -12.40533 -12.28678 -12.16046 -12.02739 -11.64295 -11.40022 -11.36129 -11.33470 -11.03437 -10.81482 -10.74391 -10.46607 -10.30340 -10.25704 -10.21867 -10.14761 -10.03463 -9.75376 -9.70367 -8.96348 -8.50568 -8.20945 -7.12016 -6.01039 -3.44699 3.00297 3.19128 3.32885 3.36543 3.45218 3.58025 3.82196 4.47016 4.56289 4.62171 4.66406 4.80432 4.85776 4.95985 5.01684 5.11076 5.20502 5.24100 5.31800 5.38976 5.39788 5.43314 5.46544 5.48836 5.55084 5.59431 5.62592 5.69698 5.73202 5.77799 5.83454 5.84383 5.88647 5.93168 5.93998 5.97595 6.01803 6.08585 6.10625 6.13572 6.23745 6.28388 6.36418 6.45865 6.91676 7.01783 7.74377 7.93731 8.26251 8.53039 8.80693 8.95905 9.62614 9.88465 11.12557 Molecular weight = 338.20amu Principal moments of inertia in cm(-1) A = 0.012821 B = 0.003978 C = 0.003395 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2183.459159 B = 7037.326892 C = 8245.997702 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.376 6.376 3 C 0.426 3.574 4 O -0.493 6.493 5 C 0.144 3.856 6 N -0.549 5.549 7 C -0.268 4.268 8 H 0.086 0.914 9 C 0.042 3.958 10 N -0.892 5.892 11 Si 0.853 3.147 12 H -0.289 1.289 13 H -0.300 1.300 14 H -0.225 1.225 15 C 0.136 3.864 16 C 0.482 3.518 17 O -0.510 6.510 18 N -0.624 5.624 19 C 0.109 3.891 20 C -0.135 4.135 21 C -0.113 4.113 22 C -0.094 4.094 23 H 0.070 0.930 24 C -0.112 4.112 25 C -0.120 4.120 26 C -0.118 4.118 27 C -0.127 4.127 28 C 0.148 3.852 29 H 0.097 0.903 30 H 0.090 0.910 31 H 0.054 0.946 32 H 0.057 0.943 33 H 0.102 0.898 34 H 0.081 0.919 35 H 0.265 0.735 36 H 0.088 0.912 37 H 0.069 0.931 38 H 0.064 0.936 39 H 0.085 0.915 40 H 0.071 0.929 41 H 0.065 0.935 42 H 0.068 0.932 43 H 0.060 0.940 44 H 0.061 0.939 45 H 0.063 0.937 46 H 0.063 0.937 47 H 0.059 0.941 48 H 0.061 0.939 49 H 0.063 0.937 50 H 0.066 0.934 51 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.234 -1.782 21.174 21.285 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.293 6.293 3 C 0.265 3.735 4 O -0.378 6.378 5 C 0.015 3.985 6 N -0.266 5.266 7 C -0.396 4.396 8 H 0.103 0.897 9 C -0.160 4.160 10 N -0.532 5.532 11 Si 0.682 3.318 12 H -0.218 1.218 13 H -0.228 1.228 14 H -0.147 1.147 15 C 0.006 3.994 16 C 0.268 3.732 17 O -0.383 6.383 18 N -0.361 5.361 19 C -0.015 4.015 20 C -0.174 4.174 21 C -0.151 4.151 22 C -0.114 4.114 23 H 0.089 0.911 24 C -0.150 4.150 25 C -0.157 4.157 26 C -0.156 4.156 27 C -0.166 4.166 28 C 0.045 3.955 29 H 0.115 0.885 30 H 0.108 0.892 31 H 0.073 0.927 32 H 0.076 0.924 33 H 0.119 0.881 34 H 0.099 0.901 35 H 0.075 0.925 36 H 0.106 0.894 37 H 0.087 0.913 38 H 0.082 0.918 39 H 0.103 0.897 40 H 0.089 0.911 41 H 0.084 0.916 42 H 0.086 0.914 43 H 0.079 0.921 44 H 0.080 0.920 45 H 0.082 0.918 46 H 0.082 0.918 47 H 0.078 0.922 48 H 0.079 0.921 49 H 0.082 0.918 50 H 0.084 0.916 51 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 1.505 -1.723 20.537 20.664 hybrid contribution 0.215 -0.752 -0.084 0.786 sum 1.720 -2.475 20.453 20.674 Atomic orbital electron populations 1.23073 0.78589 1.02441 1.01917 1.86622 1.22036 1.35726 1.84930 1.26515 0.94150 0.80855 0.71952 1.90570 1.66741 1.36329 1.44204 1.21199 0.85041 0.88751 1.03527 1.43486 1.72405 1.08693 1.02035 1.18706 1.35296 0.94686 0.90869 0.89665 1.25368 0.97021 0.98399 0.95204 1.69868 1.43665 1.41149 0.98499 0.87342 0.80312 0.82919 0.81266 1.21828 1.22788 1.14698 1.21018 0.91020 1.00180 0.87148 1.22872 0.93195 0.77263 0.79852 1.90715 1.48799 1.41435 1.57321 1.48718 1.10887 1.62329 1.14187 1.21617 0.92201 0.96282 0.91395 1.21932 0.97368 1.01362 0.96704 1.21594 0.94660 1.00919 0.97903 1.21241 0.95487 0.99544 0.95103 0.91133 1.21456 0.95976 0.97158 1.00399 1.21573 1.00488 0.96215 0.97432 1.21513 0.97173 1.00309 0.96610 1.21715 0.96270 0.97397 1.01174 1.20864 0.84737 0.95796 0.94147 0.88488 0.89179 0.92708 0.92427 0.88113 0.90146 0.92535 0.89422 0.91343 0.91824 0.89658 0.91057 0.91617 0.91352 0.92149 0.91995 0.91812 0.91821 0.92239 0.92054 0.91840 0.91578 0.91521 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.49 10.56 101.05 1.07 1.56 16 2 O -0.38 -6.98 10.57 -39.27 -0.41 -7.40 16 3 C 0.43 9.18 8.01 36.00 0.29 9.46 16 4 O -0.49 -11.71 16.19 -18.76 -0.30 -12.02 16 5 C 0.14 3.24 4.87 -5.19 -0.03 3.21 16 6 N -0.55 -13.19 1.15 -175.98 -0.20 -13.40 16 7 C -0.27 -7.61 9.94 -15.06 -0.15 -7.76 16 8 H 0.09 2.61 8.06 -52.49 -0.42 2.18 16 9 C 0.04 1.23 5.30 -17.43 -0.09 1.14 16 10 N -0.89 -27.79 13.97 55.49 0.78 -27.02 16 11 Si 0.85 22.39 24.68 -169.99 -4.19 18.20 16 12 H -0.29 -7.27 6.66 56.52 0.38 -6.89 16 13 H -0.30 -8.09 7.11 56.52 0.40 -7.69 16 14 H -0.22 -5.88 5.44 56.52 0.31 -5.57 16 15 C 0.14 2.65 4.57 -5.19 -0.02 2.63 16 16 C 0.48 9.27 7.77 -10.98 -0.09 9.18 16 17 O -0.51 -12.07 14.07 5.56 0.08 -11.99 16 18 N -0.62 -9.13 2.62 -165.95 -0.43 -9.57 16 19 C 0.11 1.20 5.85 -3.72 -0.02 1.18 16 20 C -0.14 -1.23 6.08 -26.60 -0.16 -1.39 16 21 C -0.11 -1.00 4.62 -26.74 -0.12 -1.12 16 22 C -0.09 -1.00 2.50 -91.07 -0.23 -1.23 16 23 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 24 C -0.11 -1.01 5.42 -26.91 -0.15 -1.16 16 25 C -0.12 -1.00 5.67 -26.72 -0.15 -1.15 16 26 C -0.12 -1.15 5.91 -26.75 -0.16 -1.31 16 27 C -0.13 -1.48 4.87 -27.27 -0.13 -1.61 16 28 C 0.15 1.97 2.57 -68.27 -0.18 1.80 16 29 H 0.10 1.59 7.05 -51.93 -0.37 1.22 16 30 H 0.09 0.96 8.14 -51.93 -0.42 0.54 16 31 H 0.05 0.73 8.13 -51.93 -0.42 0.31 16 32 H 0.06 0.85 8.13 -51.93 -0.42 0.43 16 33 H 0.10 2.47 3.08 -51.93 -0.16 2.31 16 34 H 0.08 1.59 8.12 -51.93 -0.42 1.17 16 35 H 0.26 7.83 8.31 -40.82 -0.34 7.49 16 36 H 0.09 1.66 8.00 -51.93 -0.42 1.25 16 37 H 0.07 1.15 7.40 -51.93 -0.38 0.77 16 38 H 0.06 0.64 7.20 -51.93 -0.37 0.27 16 39 H 0.09 0.93 5.92 -51.93 -0.31 0.62 16 40 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 41 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 42 H 0.07 0.58 5.05 -51.93 -0.26 0.32 16 43 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 44 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 45 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 46 H 0.06 0.50 6.61 -51.93 -0.34 0.15 16 47 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 48 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 49 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 50 H 0.07 0.69 5.35 -51.93 -0.28 0.41 16 51 H 0.07 0.91 8.14 -51.93 -0.42 0.48 16 LS Contribution 382.91 15.07 5.77 5.77 Total: -1.00 -35.04 382.91 -7.73 -42.77 By element: Atomic # 1 Polarization: 9.70 SS G_CDS: -8.48 Total: 1.21 kcal Atomic # 6 Polarization: 13.75 SS G_CDS: -0.32 Total: 13.43 kcal Atomic # 7 Polarization: -50.12 SS G_CDS: 0.14 Total: -49.98 kcal Atomic # 8 Polarization: -30.76 SS G_CDS: -0.64 Total: -31.40 kcal Atomic # 14 Polarization: 22.39 SS G_CDS: -4.19 Total: 18.20 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -35.04 -7.73 -42.77 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000177620152.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.210 kcal (2) G-P(sol) polarization free energy of solvation -35.038 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.248 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.730 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.767 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.978 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.29 seconds