Wall clock time and date at job start Tue Mar 31 2020 22:03:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45195 * 1 3 3 C 1.34234 * 117.00129 * 2 1 4 4 O 1.20832 * 119.99476 * 359.97438 * 3 2 1 5 5 C 1.50694 * 120.00102 * 180.02562 * 3 2 1 6 6 N 1.46506 * 109.46869 * 185.68200 * 5 3 2 7 7 C 1.36938 * 119.99984 * 263.63849 * 6 5 3 8 8 H 1.07998 * 120.00231 * 146.24270 * 7 6 5 9 9 C 1.38813 * 119.99889 * 326.24740 * 7 6 5 10 10 N 1.31627 * 120.00008 * 157.74505 * 9 7 6 11 11 Si 1.86799 * 120.00132 * 337.74758 * 9 7 6 12 12 H 1.48497 * 109.47209 * 95.39459 * 11 9 7 13 13 H 1.48502 * 109.47094 * 215.39351 * 11 9 7 14 14 H 1.48500 * 109.46765 * 335.39078 * 11 9 7 15 15 C 1.46500 * 120.00147 * 83.63924 * 6 5 3 16 16 C 1.50705 * 109.46681 * 90.35653 * 15 6 5 17 17 O 1.21280 * 120.00157 * 4.52630 * 16 15 6 18 18 N 1.34777 * 119.99659 * 184.52094 * 16 15 6 19 19 C 1.46942 * 120.78664 * 0.02562 * 18 16 15 20 20 C 1.53158 * 108.94639 * 126.08190 * 19 18 16 21 21 C 1.53101 * 109.42690 * 54.27992 * 20 19 18 22 22 C 1.52885 * 109.41630 * 299.18051 * 21 20 19 23 23 H 1.09003 * 109.25667 * 302.15493 * 22 21 20 24 24 C 1.52658 * 110.11609 * 182.14904 * 22 21 20 25 25 C 1.52985 * 109.79115 * 298.26219 * 24 22 21 26 26 C 1.53041 * 109.25209 * 300.15569 * 25 24 22 27 27 C 1.52925 * 109.33620 * 60.52831 * 26 25 24 28 28 C 1.47201 * 120.78432 * 179.72620 * 18 16 15 29 29 H 1.09000 * 109.96086 * 354.59237 * 28 18 16 30 30 H 1.09000 * 109.47031 * 180.02562 * 1 2 3 31 31 H 1.08999 * 109.47420 * 300.00226 * 1 2 3 32 32 H 1.08997 * 109.47442 * 60.00343 * 1 2 3 33 33 H 1.08996 * 109.47328 * 65.68298 * 5 3 2 34 34 H 1.09000 * 109.47337 * 305.67452 * 5 3 2 35 35 H 0.96998 * 119.99813 * 179.97438 * 10 9 7 36 36 H 1.08999 * 109.47211 * 210.35643 * 15 6 5 37 37 H 1.08999 * 109.46937 * 330.36004 * 15 6 5 38 38 H 1.08996 * 109.56168 * 245.92150 * 19 18 16 39 39 H 1.09000 * 109.55686 * 6.24938 * 19 18 16 40 40 H 1.09005 * 109.48108 * 174.26375 * 20 19 18 41 41 H 1.08999 * 109.48090 * 294.29271 * 20 19 18 42 42 H 1.09002 * 109.47551 * 59.16617 * 21 20 19 43 43 H 1.08998 * 109.48281 * 179.19750 * 21 20 19 44 44 H 1.08994 * 109.41622 * 58.35632 * 24 22 21 45 45 H 1.08997 * 109.42153 * 178.16546 * 24 22 21 46 46 H 1.09000 * 109.50462 * 60.09056 * 25 24 22 47 47 H 1.08997 * 109.50623 * 180.22374 * 25 24 22 48 48 H 1.08997 * 109.49417 * 180.48661 * 26 25 24 49 49 H 1.09003 * 109.49493 * 300.57465 * 26 25 24 50 50 H 1.09001 * 109.43451 * 59.62901 * 27 26 25 51 51 H 1.09000 * 109.43025 * 179.48241 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4032 2.2094 -0.0005 5 6 3.5663 1.2749 -0.0006 6 7 3.9820 2.6730 0.1363 7 6 4.2957 3.4062 -0.9769 8 1 4.0758 4.4631 -1.0071 9 6 4.8963 2.7908 -2.0667 10 7 4.8075 3.3356 -3.2616 11 14 5.8306 1.1896 -1.8373 12 1 4.9353 0.0456 -2.1453 13 1 6.9999 1.1634 -2.7524 14 1 6.2995 1.0871 -0.4320 15 6 4.0621 3.2868 1.4641 16 6 5.4471 3.0912 2.0251 17 8 6.3079 2.5707 1.3476 18 7 5.7292 3.4949 3.2796 19 6 4.6994 4.1271 4.1157 20 6 4.6015 3.3685 5.4426 21 6 5.9862 3.2970 6.0917 22 6 6.9441 2.5486 5.1644 23 1 6.5471 1.5532 4.9650 24 6 8.3170 2.4213 5.8197 25 6 8.9046 3.8123 6.0655 26 6 9.0409 4.5458 4.7294 27 6 7.6605 4.6890 4.0871 28 6 7.0744 3.3070 3.8470 29 1 7.6950 2.7397 3.1533 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3634 0.5139 0.8899 32 1 -0.3634 0.5138 -0.8900 33 1 3.9509 0.8715 -0.9373 34 1 3.9608 0.6952 0.8339 35 1 5.2275 2.9058 -4.0230 36 1 3.8493 4.3529 1.3850 37 1 3.3329 2.8187 2.1253 38 1 4.9718 5.1648 4.3079 39 1 3.7387 4.0894 3.6022 40 1 3.9141 3.8894 6.1093 41 1 4.2340 2.3591 5.2580 42 1 6.3601 4.3065 6.2626 43 1 5.9150 2.7697 7.0430 44 1 8.2177 1.8968 6.7699 45 1 8.9809 1.8583 5.1637 46 1 8.2434 4.3754 6.7242 47 1 9.8861 3.7159 6.5297 48 1 9.4674 5.5345 4.8990 49 1 9.6930 3.9767 4.0668 50 1 7.0070 5.2519 4.7536 51 1 7.7546 5.2194 3.1396 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000177620152.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:03:09 Heat of formation + Delta-G solvation = -116.686221 kcal Electronic energy + Delta-G solvation = -31833.249740 eV Core-core repulsion = 27732.539066 eV Total energy + Delta-G solvation = -4100.710674 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.204 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -41.76165 -41.29100 -39.58804 -37.77379 -36.77413 -36.40463 -33.89359 -33.83155 -31.55947 -31.28512 -30.32247 -28.71542 -27.74592 -26.35351 -24.57899 -23.38319 -23.25356 -22.78240 -22.11629 -20.12446 -19.24091 -18.91168 -18.71659 -17.93535 -17.88050 -17.29022 -17.01386 -16.81112 -16.38635 -16.07808 -15.74850 -15.36048 -15.28586 -14.90704 -14.63165 -14.52502 -14.42608 -14.25354 -14.08282 -13.93441 -13.64473 -13.57181 -13.28989 -13.17195 -12.91716 -12.88422 -12.62645 -12.45794 -12.22921 -12.13956 -12.06397 -11.82512 -11.78272 -11.70127 -11.58563 -11.52372 -11.15484 -11.10734 -10.87568 -10.83094 -10.44800 -9.40984 -9.07866 -8.27255 -5.67148 1.21492 1.26870 1.44610 1.68951 1.75570 1.86737 2.16394 2.40036 2.98145 3.17169 3.60099 3.79049 3.85411 3.92856 4.04985 4.07729 4.15368 4.19655 4.25920 4.27783 4.31084 4.35977 4.37351 4.37729 4.39733 4.45524 4.57204 4.60200 4.64251 4.69718 4.71216 4.82758 4.91409 4.93785 4.99231 5.11802 5.17919 5.20252 5.23229 5.26886 5.34586 5.42726 5.43949 5.52158 5.62889 5.71643 5.81550 6.03288 6.52406 6.70195 6.94949 7.39353 7.52064 7.77752 8.90934 Molecular weight = 338.20amu Principal moments of inertia in cm(-1) A = 0.012821 B = 0.003978 C = 0.003395 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2183.459159 B = 7037.326892 C = 8245.997702 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.374 6.374 3 C 0.436 3.564 4 O -0.521 6.521 5 C 0.141 3.859 6 N -0.565 5.565 7 C -0.250 4.250 8 H 0.050 0.950 9 C -0.013 4.013 10 N -0.942 5.942 11 Si 0.915 3.085 12 H -0.271 1.271 13 H -0.314 1.314 14 H -0.225 1.225 15 C 0.137 3.863 16 C 0.481 3.519 17 O -0.564 6.564 18 N -0.615 5.615 19 C 0.098 3.902 20 C -0.130 4.130 21 C -0.109 4.109 22 C -0.088 4.088 23 H 0.054 0.946 24 C -0.110 4.110 25 C -0.113 4.113 26 C -0.117 4.117 27 C -0.121 4.121 28 C 0.145 3.855 29 H 0.056 0.944 30 H 0.134 0.866 31 H 0.065 0.935 32 H 0.049 0.951 33 H 0.082 0.918 34 H 0.109 0.891 35 H 0.264 0.736 36 H 0.088 0.912 37 H 0.100 0.900 38 H 0.080 0.920 39 H 0.087 0.913 40 H 0.100 0.900 41 H 0.058 0.942 42 H 0.079 0.921 43 H 0.081 0.919 44 H 0.082 0.918 45 H 0.049 0.951 46 H 0.080 0.920 47 H 0.073 0.927 48 H 0.075 0.925 49 H 0.047 0.953 50 H 0.086 0.914 51 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.324 -2.731 25.393 25.542 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.290 6.290 3 C 0.276 3.724 4 O -0.408 6.408 5 C 0.012 3.988 6 N -0.283 5.283 7 C -0.380 4.380 8 H 0.068 0.932 9 C -0.210 4.210 10 N -0.585 5.585 11 Si 0.743 3.257 12 H -0.198 1.198 13 H -0.243 1.243 14 H -0.147 1.147 15 C 0.009 3.991 16 C 0.268 3.732 17 O -0.442 6.442 18 N -0.349 5.349 19 C -0.024 4.024 20 C -0.168 4.168 21 C -0.146 4.146 22 C -0.108 4.108 23 H 0.072 0.928 24 C -0.148 4.148 25 C -0.150 4.150 26 C -0.155 4.155 27 C -0.159 4.159 28 C 0.042 3.958 29 H 0.075 0.925 30 H 0.152 0.848 31 H 0.084 0.916 32 H 0.068 0.932 33 H 0.099 0.901 34 H 0.127 0.873 35 H 0.073 0.927 36 H 0.106 0.894 37 H 0.117 0.883 38 H 0.098 0.902 39 H 0.106 0.894 40 H 0.118 0.882 41 H 0.076 0.924 42 H 0.097 0.903 43 H 0.099 0.901 44 H 0.100 0.900 45 H 0.067 0.933 46 H 0.098 0.902 47 H 0.092 0.908 48 H 0.093 0.907 49 H 0.066 0.934 50 H 0.104 0.896 51 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges 0.561 -2.690 24.855 25.006 hybrid contribution 0.367 -0.424 -1.269 1.388 sum 0.928 -3.114 23.585 23.808 Atomic orbital electron populations 1.23487 0.75610 1.05417 1.02119 1.86556 1.24715 1.33554 1.84172 1.25917 0.93767 0.81272 0.71451 1.90563 1.67258 1.37390 1.45605 1.21102 0.86044 0.87994 1.03651 1.43464 1.73388 1.09015 1.02468 1.18548 1.33582 0.93662 0.92196 0.93199 1.25924 0.98316 1.01764 0.94981 1.69978 1.45924 1.43335 0.99307 0.86365 0.78606 0.80293 0.80465 1.19818 1.24333 1.14742 1.21094 0.92126 1.00211 0.85707 1.22573 0.92409 0.77173 0.81080 1.90687 1.49973 1.44342 1.59191 1.48666 1.12419 1.60760 1.13099 1.21969 0.91114 0.97283 0.92029 1.21919 0.98290 1.00912 0.95649 1.21602 0.93637 1.01379 0.97979 1.21194 0.97208 0.98431 0.93952 0.92773 1.21460 0.94644 0.97924 1.00799 1.21552 1.01662 0.95365 0.96450 1.21517 0.95540 1.01200 0.97241 1.21653 0.97910 0.95976 1.00390 1.20968 0.83325 0.96845 0.94709 0.92521 0.84839 0.91623 0.93212 0.90104 0.87314 0.92733 0.89359 0.88260 0.90156 0.89441 0.88170 0.92368 0.90261 0.90082 0.89958 0.93253 0.90189 0.90808 0.90668 0.93429 0.89565 0.94409 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.69 10.56 113.37 1.20 1.89 16 2 O -0.37 -13.00 10.57 -51.45 -0.54 -13.54 16 3 C 0.44 18.25 8.01 71.23 0.57 18.82 16 4 O -0.52 -24.38 16.19 21.94 0.36 -24.02 16 5 C 0.14 6.23 4.87 85.63 0.42 6.65 16 6 N -0.56 -27.51 1.15 -710.68 -0.82 -28.33 16 7 C -0.25 -14.81 9.94 84.03 0.84 -13.97 16 8 H 0.05 3.24 8.06 -2.91 -0.02 3.22 16 9 C -0.01 -0.79 5.30 84.86 0.45 -0.34 16 10 N -0.94 -61.37 13.97 21.65 0.30 -61.07 16 11 Si 0.91 48.39 24.68 68.60 1.69 50.09 16 12 H -0.27 -13.25 6.66 99.48 0.66 -12.59 16 13 H -0.31 -17.14 7.11 99.48 0.71 -16.43 16 14 H -0.22 -11.87 5.44 99.48 0.54 -11.32 16 15 C 0.14 5.34 4.57 85.63 0.39 5.73 16 16 C 0.48 18.75 7.77 87.66 0.68 19.43 16 17 O -0.56 -27.67 14.07 -3.03 -0.04 -27.71 16 18 N -0.61 -17.68 2.62 -797.34 -2.09 -19.77 16 19 C 0.10 1.93 5.85 86.35 0.51 2.44 16 20 C -0.13 -1.87 6.08 30.68 0.19 -1.68 16 21 C -0.11 -1.48 4.62 30.59 0.14 -1.33 16 22 C -0.09 -1.71 2.50 -11.09 -0.03 -1.74 16 23 H 0.05 1.23 8.14 -2.39 -0.02 1.21 16 24 C -0.11 -1.75 5.42 30.48 0.17 -1.58 16 25 C -0.11 -1.53 5.67 30.60 0.17 -1.36 16 26 C -0.12 -2.12 5.91 30.58 0.18 -1.94 16 27 C -0.12 -2.71 4.87 30.25 0.15 -2.57 16 28 C 0.14 3.83 2.57 44.39 0.11 3.95 16 29 H 0.06 1.97 7.05 -2.39 -0.02 1.95 16 30 H 0.13 2.28 8.14 -2.39 -0.02 2.26 16 31 H 0.07 1.56 8.13 -2.39 -0.02 1.54 16 32 H 0.05 1.37 8.13 -2.39 -0.02 1.35 16 33 H 0.08 3.95 3.08 -2.39 -0.01 3.94 16 34 H 0.11 4.15 8.12 -2.39 -0.02 4.13 16 35 H 0.26 16.31 8.31 -92.71 -0.77 15.54 16 36 H 0.09 3.38 8.00 -2.39 -0.02 3.36 16 37 H 0.10 3.19 7.40 -2.39 -0.02 3.18 16 38 H 0.08 1.37 7.20 -2.39 -0.02 1.35 16 39 H 0.09 1.70 5.92 -2.39 -0.01 1.69 16 40 H 0.10 0.96 8.14 -2.38 -0.02 0.94 16 41 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 42 H 0.08 0.95 5.05 -2.39 -0.01 0.94 16 43 H 0.08 0.86 8.14 -2.39 -0.02 0.84 16 44 H 0.08 1.01 8.14 -2.39 -0.02 0.99 16 45 H 0.05 0.92 8.14 -2.39 -0.02 0.90 16 46 H 0.08 0.87 6.61 -2.39 -0.02 0.86 16 47 H 0.07 0.85 8.14 -2.39 -0.02 0.83 16 48 H 0.07 1.17 8.14 -2.39 -0.02 1.15 16 49 H 0.05 1.01 8.14 -2.39 -0.02 0.99 16 50 H 0.09 1.57 5.35 -2.39 -0.01 1.56 16 51 H 0.04 1.05 8.14 -2.39 -0.02 1.03 16 Total: -1.00 -81.30 382.91 5.70 -75.60 By element: Atomic # 1 Polarization: 15.63 SS G_CDS: 0.71 Total: 16.34 kcal Atomic # 6 Polarization: 26.27 SS G_CDS: 6.13 Total: 32.40 kcal Atomic # 7 Polarization: -106.56 SS G_CDS: -2.60 Total: -109.16 kcal Atomic # 8 Polarization: -65.04 SS G_CDS: -0.23 Total: -65.27 kcal Atomic # 14 Polarization: 48.39 SS G_CDS: 1.69 Total: 50.09 kcal Total: -81.30 5.70 -75.60 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000177620152.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.082 kcal (2) G-P(sol) polarization free energy of solvation -81.303 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.385 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.699 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.604 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.686 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds