Wall clock time and date at job start Tue Mar 31 2020 20:38:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.45201 * 109.46697 * 2 1 4 4 C 1.34230 * 116.99850 * 179.97438 * 3 2 1 5 5 O 1.20833 * 120.00200 * 0.02562 * 4 3 2 6 6 C 1.50700 * 120.00350 * 179.97438 * 4 3 2 7 7 C 1.52999 * 110.85821 * 303.79328 * 6 4 3 8 8 C 1.54628 * 110.99884 * 67.60480 * 6 4 3 9 9 C 1.51287 * 104.25903 * 142.71415 * 8 6 4 10 10 O 1.21277 * 124.94704 * 164.00721 * 9 8 6 11 11 N 1.34424 * 110.10976 * 344.14555 * 9 8 6 12 12 C 1.46505 * 124.34872 * 179.43925 * 11 9 8 13 13 N 1.46901 * 109.46625 * 269.70036 * 12 11 9 14 14 C 1.46904 * 110.99646 * 205.00051 * 13 12 11 15 15 C 1.50699 * 109.47351 * 75.64813 * 14 13 12 16 16 H 1.08002 * 119.99544 * 355.13485 * 15 14 13 17 17 C 1.37877 * 120.00135 * 175.13546 * 15 14 13 18 18 N 1.31507 * 119.99896 * 359.97438 * 17 15 14 19 19 Si 1.86801 * 119.99876 * 180.02562 * 17 15 14 20 20 H 1.48504 * 109.46897 * 179.97438 * 19 17 15 21 21 H 1.48501 * 109.47170 * 59.99986 * 19 17 15 22 22 H 1.48501 * 109.47034 * 299.99681 * 19 17 15 23 23 C 1.46894 * 111.00298 * 81.04402 * 13 12 11 24 24 C 1.53001 * 109.47391 * 199.06171 * 23 13 12 25 25 C 1.52996 * 117.50289 * 243.48060 * 24 23 13 26 26 C 1.52998 * 117.50138 * 174.81732 * 24 23 13 27 27 C 1.46762 * 111.30034 * 359.16679 * 11 9 8 28 28 H 1.09009 * 109.47304 * 299.99934 * 1 2 3 29 29 H 1.09007 * 109.47243 * 59.99773 * 1 2 3 30 30 H 1.08998 * 109.47207 * 179.97438 * 1 2 3 31 31 H 1.08997 * 109.47032 * 240.00315 * 2 1 3 32 32 H 1.08994 * 109.47233 * 119.99845 * 2 1 3 33 33 H 1.09003 * 109.46986 * 296.21015 * 7 6 4 34 34 H 1.08998 * 109.46854 * 56.20433 * 7 6 4 35 35 H 1.08996 * 109.47087 * 176.20658 * 7 6 4 36 36 H 1.08999 * 110.48856 * 261.60958 * 8 6 4 37 37 H 1.08999 * 110.48838 * 24.25259 * 8 6 4 38 38 H 1.08996 * 109.47000 * 149.69798 * 12 11 9 39 39 H 1.08998 * 109.47160 * 29.69260 * 12 11 9 40 40 H 1.09001 * 109.46781 * 315.64738 * 14 13 12 41 41 H 1.09003 * 109.47119 * 195.65032 * 14 13 12 42 42 H 0.97003 * 120.00650 * 0.02562 * 18 17 15 43 43 H 1.08994 * 109.47341 * 319.06910 * 23 13 12 44 44 H 1.09004 * 109.46807 * 79.06511 * 23 13 12 45 45 H 1.09006 * 115.54783 * 29.14995 * 24 23 13 46 46 H 1.08999 * 117.49886 * 359.97438 * 25 24 23 47 47 H 1.09001 * 117.50211 * 145.02208 * 25 24 23 48 48 H 1.09001 * 117.50058 * 214.98418 * 26 24 23 49 49 H 1.08998 * 117.50019 * 359.97438 * 26 24 23 50 50 H 1.09008 * 110.24430 * 136.28354 * 27 11 9 51 51 H 1.08997 * 110.24912 * 258.28032 * 27 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0139 1.3690 0.0000 4 6 3.3446 1.5449 0.0005 5 8 4.0807 0.5867 0.0005 6 6 3.9206 2.9375 0.0000 7 6 3.3946 3.7441 -1.1889 8 6 3.6235 3.6606 1.3341 9 6 4.8743 4.4664 1.6078 10 8 4.9525 5.3795 2.4021 11 7 5.8857 4.0249 0.8402 12 6 7.2363 4.5926 0.8456 13 7 7.3205 5.6652 -0.1546 14 6 8.7046 5.8536 -0.6092 15 6 9.0794 4.7403 -1.5531 16 1 8.3902 3.9279 -1.7306 17 6 10.3021 4.7587 -2.1901 18 7 11.1410 5.7481 -1.9743 19 14 10.7662 3.3789 -3.3606 20 1 12.1218 3.6323 -3.9117 21 1 9.7833 3.3212 -4.4724 22 1 10.7624 2.0867 -2.6289 23 6 6.7633 6.9191 0.3699 24 6 6.4272 7.8540 -0.7937 25 6 7.1924 9.1760 -0.8816 26 6 5.7204 9.1697 -0.4614 27 6 5.4649 2.8970 0.0008 28 1 -0.3634 0.5139 0.8901 29 1 -0.3634 0.5139 -0.8900 30 1 -0.3633 -1.0276 -0.0005 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8899 33 1 3.7329 3.2848 -2.1178 34 1 2.3049 3.7568 -1.1657 35 1 3.7712 4.7653 -1.1303 36 1 2.7594 4.3164 1.2284 37 1 3.4587 2.9365 2.1320 38 1 7.9590 3.8132 0.6043 39 1 7.4558 4.9987 1.8330 40 1 9.3742 5.8417 0.2508 41 1 8.7910 6.8107 -1.1237 42 1 10.8999 6.4648 -1.3668 43 1 5.8576 6.7050 0.9373 44 1 7.4951 7.3977 1.0207 45 1 6.1620 7.3628 -1.7300 46 1 7.9350 9.3799 -0.1102 47 1 7.4303 9.5547 -1.8756 48 1 4.9906 9.5442 -1.1792 49 1 5.4945 9.3691 0.5861 50 1 5.8459 3.0187 -1.0133 51 1 5.8174 1.9577 0.4267 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000184869326.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:38:24 Heat of formation + Delta-G solvation = -90.442074 kcal Electronic energy + Delta-G solvation = -31036.014546 eV Core-core repulsion = 26936.441904 eV Total energy + Delta-G solvation = -4099.572643 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.204 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -41.35583 -39.94973 -37.72435 -37.12816 -36.30413 -35.60404 -33.38166 -32.42210 -31.78489 -28.77767 -27.38520 -26.97739 -25.84963 -24.58902 -23.47067 -22.64184 -22.01760 -21.47428 -20.28891 -19.77067 -19.26606 -17.68242 -17.06700 -16.94708 -16.81093 -16.19418 -15.86405 -15.20037 -15.17499 -14.58778 -14.27184 -14.20165 -14.01193 -13.81808 -13.65549 -13.52879 -13.30172 -13.03771 -12.96066 -12.51827 -12.43180 -12.21514 -12.20904 -11.93888 -11.88011 -11.63449 -11.42013 -11.33455 -11.25491 -11.15631 -10.88379 -10.84040 -10.70028 -10.63450 -10.55720 -10.11096 -9.93405 -9.67695 -9.42280 -8.75622 -8.57025 -8.38936 -7.46438 -6.38260 -4.08330 1.91842 2.26856 2.66496 3.23983 3.43044 3.44535 3.63038 4.00118 4.14072 4.18189 4.44744 4.49502 4.58298 4.60217 4.63799 4.72732 4.79052 4.92122 5.22686 5.27966 5.31682 5.32597 5.36701 5.40768 5.41466 5.51991 5.58214 5.59185 5.62800 5.67655 5.73712 5.85131 5.88384 5.91125 6.02475 6.04011 6.16139 6.17947 6.19967 6.29407 6.43423 6.60627 6.72153 6.94258 7.02689 7.33551 7.47842 7.77242 7.90653 8.24493 8.31480 8.54465 8.84193 9.62321 11.00385 Molecular weight = 338.20amu Principal moments of inertia in cm(-1) A = 0.009690 B = 0.003712 C = 0.002964 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2889.016039 B = 7542.152400 C = 9444.840578 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.060 3.940 3 O -0.352 6.352 4 C 0.482 3.518 5 O -0.498 6.498 6 C -0.066 4.066 7 C -0.135 4.135 8 C -0.138 4.138 9 C 0.519 3.481 10 O -0.534 6.534 11 N -0.595 5.595 12 C 0.296 3.704 13 N -0.539 5.539 14 C 0.188 3.812 15 C -0.588 4.588 16 H 0.055 0.945 17 C 0.016 3.984 18 N -0.912 5.912 19 Si 1.069 2.931 20 H -0.283 1.283 21 H -0.288 1.288 22 H -0.288 1.288 23 C 0.079 3.921 24 C -0.127 4.127 25 C -0.181 4.181 26 C -0.187 4.187 27 C 0.121 3.879 28 H 0.067 0.933 29 H 0.067 0.933 30 H 0.079 0.921 31 H 0.071 0.929 32 H 0.070 0.930 33 H 0.070 0.930 34 H 0.072 0.928 35 H 0.080 0.920 36 H 0.114 0.886 37 H 0.103 0.897 38 H 0.104 0.896 39 H 0.052 0.948 40 H -0.021 1.021 41 H 0.032 0.968 42 H 0.267 0.733 43 H 0.079 0.921 44 H 0.024 0.976 45 H 0.109 0.891 46 H 0.088 0.912 47 H 0.090 0.910 48 H 0.088 0.912 49 H 0.088 0.912 50 H 0.099 0.901 51 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.414 -6.614 3.734 21.781 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.014 4.014 3 O -0.269 6.269 4 C 0.324 3.676 5 O -0.384 6.384 6 C -0.068 4.068 7 C -0.192 4.192 8 C -0.179 4.179 9 C 0.306 3.694 10 O -0.412 6.412 11 N -0.328 5.328 12 C 0.085 3.915 13 N -0.265 5.265 14 C 0.062 3.938 15 C -0.627 4.627 16 H 0.073 0.927 17 C -0.188 4.188 18 N -0.549 5.549 19 Si 0.897 3.103 20 H -0.209 1.209 21 H -0.214 1.214 22 H -0.215 1.215 23 C -0.049 4.049 24 C -0.146 4.146 25 C -0.218 4.218 26 C -0.224 4.224 27 C -0.003 4.003 28 H 0.086 0.914 29 H 0.086 0.914 30 H 0.098 0.902 31 H 0.090 0.910 32 H 0.089 0.911 33 H 0.089 0.911 34 H 0.091 0.909 35 H 0.099 0.901 36 H 0.132 0.868 37 H 0.121 0.879 38 H 0.122 0.878 39 H 0.070 0.930 40 H -0.003 1.003 41 H 0.050 0.950 42 H 0.078 0.922 43 H 0.097 0.903 44 H 0.042 0.958 45 H 0.127 0.873 46 H 0.107 0.893 47 H 0.108 0.892 48 H 0.107 0.893 49 H 0.106 0.894 50 H 0.118 0.882 51 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -19.128 -7.114 2.741 20.591 hybrid contribution -0.702 0.593 1.547 1.800 sum -19.830 -6.521 4.288 21.311 Atomic orbital electron populations 1.21809 0.92503 1.03002 1.03634 1.23071 0.95443 0.80093 1.02785 1.86502 1.24096 1.32428 1.83834 1.23137 0.80727 0.91617 0.72141 1.90696 1.60343 1.42666 1.44718 1.21363 0.96805 0.89852 0.98804 1.21822 1.01627 1.00654 0.95115 1.22423 0.99130 1.00330 0.95996 1.20592 0.85409 0.83056 0.80374 1.90699 1.84001 1.29785 1.36670 1.48468 1.11926 1.32570 1.39862 1.21803 0.81002 0.94395 0.94291 1.61735 1.24214 1.04199 1.36389 1.19820 0.81198 0.98519 0.94217 1.21938 1.03761 1.08622 1.28351 0.92652 1.25788 0.93003 1.01214 0.98758 1.70791 1.37649 1.10579 1.35856 0.83536 0.76213 0.74658 0.75861 1.20887 1.21429 1.21452 1.21794 0.99115 0.90210 0.93789 1.22242 1.02948 0.88496 1.00921 1.22981 0.94081 1.02394 1.02347 1.22929 0.95350 1.02586 1.01549 1.22078 0.89588 0.90328 0.98262 0.91408 0.91369 0.90224 0.91038 0.91143 0.91113 0.90900 0.90060 0.86822 0.87910 0.87811 0.93045 1.00303 0.95013 0.92245 0.90301 0.95752 0.87308 0.89347 0.89196 0.89327 0.89387 0.88236 0.89396 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.80 10.29 37.16 0.38 -0.42 16 2 C 0.06 0.47 6.19 37.16 0.23 0.70 16 3 O -0.35 -3.49 10.04 -39.26 -0.39 -3.88 16 4 C 0.48 5.62 6.59 36.01 0.24 5.86 16 5 O -0.50 -7.06 15.26 -18.76 -0.29 -7.34 16 6 C -0.07 -0.76 0.95 -154.03 -0.15 -0.91 16 7 C -0.14 -1.38 8.42 37.16 0.31 -1.07 16 8 C -0.14 -1.58 5.96 -26.74 -0.16 -1.73 16 9 C 0.52 8.12 7.37 -10.86 -0.08 8.04 16 10 O -0.53 -10.04 15.77 5.56 0.09 -9.95 16 11 N -0.59 -9.58 3.14 -175.90 -0.55 -10.13 16 12 C 0.30 5.62 5.54 -63.31 -0.35 5.27 16 13 N -0.54 -11.21 4.46 -239.98 -1.07 -12.28 16 14 C 0.19 4.64 3.87 -4.97 -0.02 4.62 16 15 C -0.59 -15.81 8.51 -34.44 -0.29 -16.10 16 16 H 0.06 1.47 7.81 -52.49 -0.41 1.06 16 17 C 0.02 0.46 5.46 -17.82 -0.10 0.36 16 18 N -0.91 -27.15 13.65 55.43 0.76 -26.39 16 19 Si 1.07 24.71 29.90 -169.99 -5.08 19.62 16 20 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 21 H -0.29 -6.39 7.11 56.52 0.40 -5.98 16 22 H -0.29 -6.35 7.11 56.52 0.40 -5.95 16 23 C 0.08 1.52 5.10 -3.83 -0.02 1.50 16 24 C -0.13 -2.25 5.13 -90.62 -0.46 -2.72 16 25 C -0.18 -2.96 10.09 -26.70 -0.27 -3.23 16 26 C -0.19 -2.75 10.25 -26.69 -0.27 -3.02 16 27 C 0.12 1.70 6.26 -3.12 -0.02 1.68 16 28 H 0.07 0.35 8.14 -51.92 -0.42 -0.07 16 29 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 30 H 0.08 0.29 8.14 -51.93 -0.42 -0.13 16 31 H 0.07 0.56 8.13 -51.93 -0.42 0.14 16 32 H 0.07 0.54 8.13 -51.93 -0.42 0.12 16 33 H 0.07 0.72 8.14 -51.93 -0.42 0.29 16 34 H 0.07 0.62 8.04 -51.93 -0.42 0.20 16 35 H 0.08 0.94 8.14 -51.93 -0.42 0.52 16 36 H 0.11 1.11 7.91 -51.93 -0.41 0.70 16 37 H 0.10 1.05 7.89 -51.93 -0.41 0.64 16 38 H 0.10 2.08 7.24 -51.93 -0.38 1.70 16 39 H 0.05 1.00 7.69 -51.93 -0.40 0.60 16 40 H -0.02 -0.54 7.99 -51.93 -0.42 -0.96 16 41 H 0.03 0.84 6.86 -51.93 -0.36 0.48 16 42 H 0.27 7.95 7.19 -40.82 -0.29 7.65 16 43 H 0.08 1.52 5.18 -51.93 -0.27 1.25 16 44 H 0.02 0.49 7.74 -51.93 -0.40 0.09 16 45 H 0.11 2.05 8.14 -51.93 -0.42 1.63 16 46 H 0.09 1.46 8.03 -51.93 -0.42 1.05 16 47 H 0.09 1.42 8.14 -51.93 -0.42 1.00 16 48 H 0.09 1.15 8.14 -51.93 -0.42 0.73 16 49 H 0.09 1.25 8.14 -51.93 -0.42 0.83 16 50 H 0.10 1.50 7.91 -51.92 -0.41 1.09 16 51 H 0.09 1.25 6.97 -51.93 -0.36 0.88 16 LS Contribution 413.52 15.07 6.23 6.23 Total: -1.00 -31.92 413.52 -10.13 -42.05 By element: Atomic # 1 Polarization: 12.06 SS G_CDS: -8.79 Total: 3.27 kcal Atomic # 6 Polarization: -0.15 SS G_CDS: -1.03 Total: -1.18 kcal Atomic # 7 Polarization: -47.94 SS G_CDS: -0.87 Total: -48.81 kcal Atomic # 8 Polarization: -20.59 SS G_CDS: -0.59 Total: -21.18 kcal Atomic # 14 Polarization: 24.71 SS G_CDS: -5.08 Total: 19.62 kcal Total LS contribution 6.23 Total: 6.23 kcal Total: -31.92 -10.13 -42.05 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000184869326.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.392 kcal (2) G-P(sol) polarization free energy of solvation -31.916 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.308 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.135 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.051 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.442 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds