Wall clock time and date at job start Tue Mar 31 2020 20:43:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30991 * 1 3 3 C 1.50705 * 119.99990 * 2 1 4 4 N 1.46899 * 109.46966 * 126.23218 * 3 2 1 5 5 C 1.46907 * 110.99735 * 200.03306 * 4 3 2 6 6 C 1.50702 * 109.47285 * 66.04126 * 5 4 3 7 7 H 1.08000 * 119.99626 * 0.02562 * 6 5 4 8 8 C 1.37871 * 119.99911 * 179.97438 * 6 5 4 9 9 N 1.31517 * 120.00330 * 0.02562 * 8 6 5 10 10 Si 1.86799 * 120.00109 * 180.02562 * 8 6 5 11 11 H 1.48498 * 109.47238 * 59.99797 * 10 8 6 12 12 H 1.48493 * 109.47346 * 180.02562 * 10 8 6 13 13 H 1.48500 * 109.46895 * 299.99954 * 10 8 6 14 14 C 1.46898 * 111.00444 * 76.07690 * 4 3 2 15 15 C 1.50699 * 109.47479 * 200.27350 * 14 4 3 16 16 O 1.21284 * 119.99401 * 5.70969 * 15 14 4 17 17 N 1.34773 * 120.00082 * 185.71145 * 15 14 4 18 18 C 1.46923 * 120.63025 * 5.44358 * 17 15 14 19 19 C 1.53199 * 108.77273 * 233.58395 * 18 17 15 20 20 C 1.53032 * 109.31297 * 305.36443 * 19 18 17 21 21 C 1.53044 * 109.53905 * 61.36436 * 20 19 18 22 22 C 1.46929 * 120.62957 * 185.41657 * 17 15 14 23 23 H 1.08996 * 109.70407 * 246.27212 * 22 17 15 24 24 C 1.50706 * 109.58477 * 6.62905 * 22 17 15 25 25 O 1.20823 * 120.00123 * 61.80325 * 24 22 17 26 26 O 1.34223 * 119.99704 * 241.80124 * 24 22 17 27 27 C 1.45202 * 116.99828 * 180.02562 * 26 24 22 28 28 C 1.52999 * 109.47185 * 180.02562 * 27 26 24 29 29 H 1.08007 * 120.00104 * 180.02562 * 1 2 3 30 30 H 1.07996 * 120.00340 * 359.97438 * 1 2 3 31 31 H 1.08001 * 120.00663 * 180.02562 * 2 1 3 32 32 H 1.08996 * 109.46845 * 6.22909 * 3 2 1 33 33 H 1.09000 * 109.46902 * 246.23019 * 3 2 1 34 34 H 1.08994 * 109.46892 * 186.04517 * 5 4 3 35 35 H 1.09003 * 109.46927 * 306.04275 * 5 4 3 36 36 H 0.97001 * 120.00552 * 180.02562 * 9 8 6 37 37 H 1.09006 * 109.46986 * 80.27327 * 14 4 3 38 38 H 1.09003 * 109.47078 * 320.27659 * 14 4 3 39 39 H 1.08999 * 109.58865 * 113.80280 * 18 17 15 40 40 H 1.08994 * 109.58767 * 353.37064 * 18 17 15 41 41 H 1.09006 * 109.49345 * 185.41091 * 19 18 17 42 42 H 1.08996 * 109.49525 * 65.32125 * 19 18 17 43 43 H 1.09001 * 109.46176 * 181.38434 * 20 19 18 44 44 H 1.08999 * 109.46290 * 301.34735 * 20 19 18 45 45 H 1.09008 * 109.49433 * 58.58487 * 21 20 19 46 46 H 1.08999 * 109.49777 * 178.68098 * 21 20 19 47 47 H 1.09000 * 109.46910 * 299.99985 * 27 26 24 48 48 H 1.08999 * 109.47191 * 60.00285 * 27 26 24 49 49 H 1.09001 * 109.47059 * 300.00291 * 28 27 26 50 50 H 1.08997 * 109.47345 * 59.99627 * 28 27 26 51 51 H 1.08994 * 109.47113 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0634 1.3051 0.0000 4 7 3.0172 1.3199 1.1172 5 6 3.4183 2.6937 1.4488 6 6 2.2288 3.4493 1.9827 7 1 1.2708 2.9581 2.0677 8 6 2.3639 4.7674 2.3638 9 7 3.5307 5.3655 2.2608 10 14 0.8897 5.7040 3.0263 11 1 0.3816 5.0280 4.2470 12 1 1.2952 7.0926 3.3614 13 1 -0.1799 5.7360 1.9966 14 6 4.1896 0.4864 0.8196 15 6 4.8826 0.1165 2.1057 16 8 4.3874 0.4202 3.1703 17 7 6.0526 -0.5516 2.0727 18 6 6.7244 -0.8221 0.7944 19 6 7.0064 -2.3246 0.6939 20 6 7.7946 -2.7751 1.9258 21 6 6.9632 -2.5229 3.1858 22 6 6.6808 -1.0228 3.3145 23 1 7.6160 -0.4877 3.4793 24 6 5.7496 -0.7818 4.4747 25 8 4.6693 -1.3221 4.5047 26 8 6.1204 0.0330 5.4748 27 6 5.1734 0.2182 6.5597 28 6 5.7671 1.1729 7.5976 29 1 -0.5401 -0.9354 0.0004 30 1 -0.5400 0.9352 0.0004 31 1 1.8500 -0.9353 -0.0004 32 1 1.3604 2.1305 0.1115 33 1 2.6038 1.4127 -0.9405 34 1 4.2033 2.6705 2.2046 35 1 3.7914 3.1895 0.5526 36 1 3.6258 6.2928 2.5292 37 1 4.8781 1.0419 0.1826 38 1 3.8700 -0.4200 0.3054 39 1 7.6635 -0.2705 0.7511 40 1 6.0798 -0.5155 -0.0293 41 1 7.5895 -2.5259 -0.2048 42 1 6.0635 -2.8693 0.6459 43 1 8.0179 -3.8390 1.8450 44 1 8.7261 -2.2124 1.9868 45 1 6.0207 -3.0658 3.1144 46 1 7.5156 -2.8656 4.0607 47 1 4.2482 0.6394 6.1665 48 1 4.9646 -0.7437 7.0279 49 1 6.6925 0.7521 7.9908 50 1 5.9757 2.1347 7.1292 51 1 5.0560 1.3122 8.4118 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000292068830.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:43:31 Heat of formation + Delta-G solvation = -83.313866 kcal Electronic energy + Delta-G solvation = -31690.549360 eV Core-core repulsion = 27591.285820 eV Total energy + Delta-G solvation = -4099.263540 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.204 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -40.92055 -39.11513 -37.62165 -36.42798 -35.96187 -33.11043 -32.97054 -32.28469 -31.89265 -31.11223 -28.26445 -26.74573 -25.76885 -24.28419 -23.96104 -22.73099 -21.48804 -20.93906 -20.42369 -19.24735 -18.60642 -17.69036 -16.82501 -16.43766 -16.28407 -15.71035 -15.57180 -15.27228 -14.73169 -14.68298 -14.46150 -14.12483 -13.99863 -13.69621 -13.65805 -13.42892 -13.09259 -12.87405 -12.80513 -12.46492 -12.23101 -12.08774 -11.76884 -11.72596 -11.59026 -11.42607 -11.28309 -11.23851 -11.08884 -11.06871 -10.89588 -10.73031 -10.61679 -10.22686 -10.12396 -9.88981 -9.84954 -9.25744 -9.04821 -8.87219 -8.56259 -8.35922 -7.23203 -5.95487 -3.95008 2.40260 2.76296 2.92288 3.12121 3.26676 3.38539 3.41922 3.46638 4.46118 4.49461 4.57040 4.65666 4.78513 4.89730 5.01267 5.03388 5.15847 5.18931 5.26922 5.27879 5.36773 5.39871 5.44516 5.50353 5.55537 5.58679 5.61508 5.66915 5.71254 5.73846 5.76924 5.82365 5.89424 6.07645 6.08323 6.09365 6.16915 6.29467 6.46123 6.53962 6.92314 7.06085 7.24967 7.29549 7.30837 7.48904 7.85436 8.13590 8.20521 8.24963 8.53622 8.67794 9.10818 9.67688 11.15813 Molecular weight = 338.20amu Principal moments of inertia in cm(-1) A = 0.008976 B = 0.004512 C = 0.003498 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3118.542769 B = 6204.289700 C = 8002.301370 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.132 4.132 3 C 0.085 3.915 4 N -0.514 5.514 5 C 0.198 3.802 6 C -0.500 4.500 7 H 0.063 0.937 8 C 0.056 3.944 9 N -0.900 5.900 10 Si 0.896 3.104 11 H -0.276 1.276 12 H -0.288 1.288 13 H -0.277 1.277 14 C 0.046 3.954 15 C 0.511 3.489 16 O -0.469 6.469 17 N -0.618 5.618 18 C 0.113 3.887 19 C -0.138 4.138 20 C -0.115 4.115 21 C -0.124 4.124 22 C 0.159 3.841 23 H 0.096 0.904 24 C 0.479 3.521 25 O -0.493 6.493 26 O -0.361 6.361 27 C 0.070 3.930 28 C -0.150 4.150 29 H 0.089 0.911 30 H 0.096 0.904 31 H 0.096 0.904 32 H 0.096 0.904 33 H 0.030 0.970 34 H 0.036 0.964 35 H -0.012 1.012 36 H 0.260 0.740 37 H 0.054 0.946 38 H 0.090 0.910 39 H 0.071 0.929 40 H 0.091 0.909 41 H 0.077 0.923 42 H 0.070 0.930 43 H 0.071 0.929 44 H 0.068 0.932 45 H 0.080 0.920 46 H 0.078 0.922 47 H 0.077 0.923 48 H 0.061 0.939 49 H 0.060 0.940 50 H 0.068 0.932 51 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.635 -16.133 -1.864 19.412 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C -0.150 4.150 3 C -0.043 4.043 4 N -0.239 5.239 5 C 0.073 3.927 6 C -0.538 4.538 7 H 0.081 0.919 8 C -0.145 4.145 9 N -0.540 5.540 10 Si 0.724 3.276 11 H -0.202 1.202 12 H -0.214 1.214 13 H -0.203 1.203 14 C -0.086 4.086 15 C 0.299 3.701 16 O -0.340 6.340 17 N -0.359 5.359 18 C -0.010 4.010 19 C -0.177 4.177 20 C -0.153 4.153 21 C -0.162 4.162 22 C 0.054 3.946 23 H 0.114 0.886 24 C 0.321 3.679 25 O -0.379 6.379 26 O -0.278 6.278 27 C -0.004 4.004 28 C -0.207 4.207 29 H 0.107 0.893 30 H 0.115 0.885 31 H 0.114 0.886 32 H 0.115 0.885 33 H 0.048 0.952 34 H 0.054 0.946 35 H 0.006 0.994 36 H 0.070 0.930 37 H 0.072 0.928 38 H 0.108 0.892 39 H 0.090 0.910 40 H 0.109 0.891 41 H 0.096 0.904 42 H 0.089 0.911 43 H 0.089 0.911 44 H 0.087 0.913 45 H 0.099 0.901 46 H 0.096 0.904 47 H 0.096 0.904 48 H 0.079 0.921 49 H 0.079 0.921 50 H 0.087 0.913 51 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 9.827 -16.077 -0.760 18.858 hybrid contribution -0.351 0.868 -0.247 0.969 sum 9.476 -15.208 -1.007 17.947 Atomic orbital electron populations 1.23684 0.95948 1.01240 1.02823 1.22952 0.95954 0.98297 0.97838 1.21214 0.95800 0.95868 0.91371 1.61811 1.10631 1.14913 1.36526 1.19772 0.97273 0.80639 0.95000 1.21062 0.95913 0.95164 1.41686 0.91929 1.24944 0.95956 0.97615 0.95976 1.69949 1.23126 1.12220 1.48717 0.86584 0.82767 0.78606 0.79606 1.20179 1.21409 1.20304 1.21881 0.94376 0.99408 0.92952 1.21003 0.79354 0.77036 0.92725 1.90748 1.62558 1.50050 1.30609 1.48194 1.23351 1.58712 1.05633 1.21753 0.98204 0.95899 0.85156 1.21972 1.01242 0.96003 0.98436 1.21483 0.98363 1.01705 0.93708 1.21885 1.01947 0.93120 0.99240 1.20547 0.95026 0.96542 0.82463 0.88628 1.22553 0.86272 0.76402 0.82657 1.90653 1.21322 1.48711 1.77212 1.86368 1.47863 1.62029 1.31528 1.22909 0.92385 0.99552 0.85561 1.21786 1.01499 0.99905 0.97548 0.89273 0.88545 0.88575 0.88549 0.95189 0.94617 0.99419 0.93009 0.92807 0.89240 0.91034 0.89098 0.90395 0.91118 0.91070 0.91336 0.90113 0.90352 0.90426 0.92085 0.92082 0.91268 0.90509 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -3.13 14.32 29.02 0.42 -2.72 16 2 C -0.13 -2.23 9.34 -36.02 -0.34 -2.57 16 3 C 0.08 1.66 5.23 -4.97 -0.03 1.64 16 4 N -0.51 -11.60 3.93 -238.96 -0.94 -12.54 16 5 C 0.20 5.35 4.37 -4.97 -0.02 5.33 16 6 C -0.50 -14.64 8.23 -34.44 -0.28 -14.92 16 7 H 0.06 1.84 7.32 -52.49 -0.38 1.45 16 8 C 0.06 1.64 5.46 -17.82 -0.10 1.55 16 9 N -0.90 -27.50 13.29 55.43 0.74 -26.76 16 10 Si 0.90 22.52 29.54 -169.99 -5.02 17.50 16 11 H -0.28 -6.96 7.11 56.52 0.40 -6.56 16 12 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 13 H -0.28 -6.76 7.11 56.52 0.40 -6.35 16 14 C 0.05 0.83 3.73 -4.98 -0.02 0.81 16 15 C 0.51 9.99 6.96 -10.99 -0.08 9.91 16 16 O -0.47 -11.49 11.32 -21.26 -0.24 -11.73 16 17 N -0.62 -9.11 2.97 -166.53 -0.49 -9.60 16 18 C 0.11 1.12 6.32 -3.71 -0.02 1.10 16 19 C -0.14 -1.06 6.08 -26.61 -0.16 -1.22 16 20 C -0.12 -0.86 5.88 -26.69 -0.16 -1.01 16 21 C -0.12 -1.28 5.31 -26.61 -0.14 -1.42 16 22 C 0.16 2.21 3.34 -68.75 -0.23 1.98 16 23 H 0.10 1.17 8.14 -51.93 -0.42 0.74 16 24 C 0.48 8.71 4.50 36.01 0.16 8.87 16 25 O -0.49 -10.51 14.35 -26.91 -0.39 -10.89 16 26 O -0.36 -6.44 10.22 -41.37 -0.42 -6.86 16 27 C 0.07 1.13 6.19 37.16 0.23 1.36 16 28 C -0.15 -1.92 10.29 37.16 0.38 -1.54 16 29 H 0.09 1.21 8.06 -52.48 -0.42 0.78 16 30 H 0.10 1.54 7.84 -52.49 -0.41 1.12 16 31 H 0.10 1.49 7.29 -52.49 -0.38 1.10 16 32 H 0.10 2.10 6.23 -51.93 -0.32 1.78 16 33 H 0.03 0.53 7.99 -51.93 -0.42 0.12 16 34 H 0.04 1.08 6.94 -51.93 -0.36 0.72 16 35 H -0.01 -0.33 8.12 -51.93 -0.42 -0.75 16 36 H 0.26 7.54 8.31 -40.82 -0.34 7.20 16 37 H 0.05 0.90 7.25 -51.93 -0.38 0.52 16 38 H 0.09 1.36 6.78 -51.93 -0.35 1.01 16 39 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 40 H 0.09 0.85 5.90 -51.93 -0.31 0.54 16 41 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 42 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16 43 H 0.07 0.44 8.14 -51.93 -0.42 0.01 16 44 H 0.07 0.45 8.14 -51.93 -0.42 0.02 16 45 H 0.08 0.99 7.92 -51.92 -0.41 0.57 16 46 H 0.08 0.69 8.14 -51.93 -0.42 0.26 16 47 H 0.08 1.50 8.13 -51.93 -0.42 1.08 16 48 H 0.06 0.90 8.13 -51.93 -0.42 0.47 16 49 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 50 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 51 H 0.08 0.83 8.14 -51.93 -0.42 0.40 16 LS Contribution 406.15 15.07 6.12 6.12 Total: -1.00 -37.10 406.15 -9.81 -46.91 By element: Atomic # 1 Polarization: 9.48 SS G_CDS: -8.78 Total: 0.71 kcal Atomic # 6 Polarization: 7.53 SS G_CDS: -0.38 Total: 7.15 kcal Atomic # 7 Polarization: -48.20 SS G_CDS: -0.70 Total: -48.90 kcal Atomic # 8 Polarization: -28.43 SS G_CDS: -1.05 Total: -29.48 kcal Atomic # 14 Polarization: 22.52 SS G_CDS: -5.02 Total: 17.50 kcal Total LS contribution 6.12 Total: 6.12 kcal Total: -37.10 -9.81 -46.91 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292068830.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.404 kcal (2) G-P(sol) polarization free energy of solvation -37.101 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.505 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.808 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.910 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.314 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds