Wall clock time and date at job start Tue Mar 31 2020 20:43:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30991 * 1 3 3 C 1.50705 * 119.99990 * 2 1 4 4 N 1.46899 * 109.46966 * 126.23218 * 3 2 1 5 5 C 1.46907 * 110.99735 * 200.03306 * 4 3 2 6 6 C 1.50702 * 109.47285 * 66.04126 * 5 4 3 7 7 H 1.08000 * 119.99626 * 0.02562 * 6 5 4 8 8 C 1.37871 * 119.99911 * 179.97438 * 6 5 4 9 9 N 1.31517 * 120.00330 * 0.02562 * 8 6 5 10 10 Si 1.86799 * 120.00109 * 180.02562 * 8 6 5 11 11 H 1.48498 * 109.47238 * 59.99797 * 10 8 6 12 12 H 1.48493 * 109.47346 * 180.02562 * 10 8 6 13 13 H 1.48500 * 109.46895 * 299.99954 * 10 8 6 14 14 C 1.46898 * 111.00444 * 76.07690 * 4 3 2 15 15 C 1.50699 * 109.47479 * 200.27350 * 14 4 3 16 16 O 1.21284 * 119.99401 * 5.70969 * 15 14 4 17 17 N 1.34773 * 120.00082 * 185.71145 * 15 14 4 18 18 C 1.46923 * 120.63025 * 5.44358 * 17 15 14 19 19 C 1.53199 * 108.77273 * 233.58395 * 18 17 15 20 20 C 1.53032 * 109.31297 * 305.36443 * 19 18 17 21 21 C 1.53044 * 109.53905 * 61.36436 * 20 19 18 22 22 C 1.46929 * 120.62957 * 185.41657 * 17 15 14 23 23 H 1.08996 * 109.70407 * 246.27212 * 22 17 15 24 24 C 1.50706 * 109.58477 * 6.62905 * 22 17 15 25 25 O 1.20823 * 120.00123 * 61.80325 * 24 22 17 26 26 O 1.34223 * 119.99704 * 241.80124 * 24 22 17 27 27 C 1.45202 * 116.99828 * 180.02562 * 26 24 22 28 28 C 1.52999 * 109.47185 * 180.02562 * 27 26 24 29 29 H 1.08007 * 120.00104 * 180.02562 * 1 2 3 30 30 H 1.07996 * 120.00340 * 359.97438 * 1 2 3 31 31 H 1.08001 * 120.00663 * 180.02562 * 2 1 3 32 32 H 1.08996 * 109.46845 * 6.22909 * 3 2 1 33 33 H 1.09000 * 109.46902 * 246.23019 * 3 2 1 34 34 H 1.08994 * 109.46892 * 186.04517 * 5 4 3 35 35 H 1.09003 * 109.46927 * 306.04275 * 5 4 3 36 36 H 0.97001 * 120.00552 * 180.02562 * 9 8 6 37 37 H 1.09006 * 109.46986 * 80.27327 * 14 4 3 38 38 H 1.09003 * 109.47078 * 320.27659 * 14 4 3 39 39 H 1.08999 * 109.58865 * 113.80280 * 18 17 15 40 40 H 1.08994 * 109.58767 * 353.37064 * 18 17 15 41 41 H 1.09006 * 109.49345 * 185.41091 * 19 18 17 42 42 H 1.08996 * 109.49525 * 65.32125 * 19 18 17 43 43 H 1.09001 * 109.46176 * 181.38434 * 20 19 18 44 44 H 1.08999 * 109.46290 * 301.34735 * 20 19 18 45 45 H 1.09008 * 109.49433 * 58.58487 * 21 20 19 46 46 H 1.08999 * 109.49777 * 178.68098 * 21 20 19 47 47 H 1.09000 * 109.46910 * 299.99985 * 27 26 24 48 48 H 1.08999 * 109.47191 * 60.00285 * 27 26 24 49 49 H 1.09001 * 109.47059 * 300.00291 * 28 27 26 50 50 H 1.08997 * 109.47345 * 59.99627 * 28 27 26 51 51 H 1.08994 * 109.47113 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0634 1.3051 0.0000 4 7 3.0172 1.3199 1.1172 5 6 3.4183 2.6937 1.4488 6 6 2.2288 3.4493 1.9827 7 1 1.2708 2.9581 2.0677 8 6 2.3639 4.7674 2.3638 9 7 3.5307 5.3655 2.2608 10 14 0.8897 5.7040 3.0263 11 1 0.3816 5.0280 4.2470 12 1 1.2952 7.0926 3.3614 13 1 -0.1799 5.7360 1.9966 14 6 4.1896 0.4864 0.8196 15 6 4.8826 0.1165 2.1057 16 8 4.3874 0.4202 3.1703 17 7 6.0526 -0.5516 2.0727 18 6 6.7244 -0.8221 0.7944 19 6 7.0064 -2.3246 0.6939 20 6 7.7946 -2.7751 1.9258 21 6 6.9632 -2.5229 3.1858 22 6 6.6808 -1.0228 3.3145 23 1 7.6160 -0.4877 3.4793 24 6 5.7496 -0.7818 4.4747 25 8 4.6693 -1.3221 4.5047 26 8 6.1204 0.0330 5.4748 27 6 5.1734 0.2182 6.5597 28 6 5.7671 1.1729 7.5976 29 1 -0.5401 -0.9354 0.0004 30 1 -0.5400 0.9352 0.0004 31 1 1.8500 -0.9353 -0.0004 32 1 1.3604 2.1305 0.1115 33 1 2.6038 1.4127 -0.9405 34 1 4.2033 2.6705 2.2046 35 1 3.7914 3.1895 0.5526 36 1 3.6258 6.2928 2.5292 37 1 4.8781 1.0419 0.1826 38 1 3.8700 -0.4200 0.3054 39 1 7.6635 -0.2705 0.7511 40 1 6.0798 -0.5155 -0.0293 41 1 7.5895 -2.5259 -0.2048 42 1 6.0635 -2.8693 0.6459 43 1 8.0179 -3.8390 1.8450 44 1 8.7261 -2.2124 1.9868 45 1 6.0207 -3.0658 3.1144 46 1 7.5156 -2.8656 4.0607 47 1 4.2482 0.6394 6.1665 48 1 4.9646 -0.7437 7.0279 49 1 6.6925 0.7521 7.9908 50 1 5.9757 2.1347 7.1292 51 1 5.0560 1.3122 8.4118 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000292068830.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:43:30 Heat of formation + Delta-G solvation = -107.362221 kcal Electronic energy + Delta-G solvation = -31691.592175 eV Core-core repulsion = 27591.285820 eV Total energy + Delta-G solvation = -4100.306355 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.204 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -42.22354 -40.51880 -38.92333 -37.92114 -37.41603 -35.00025 -34.17901 -33.80742 -33.08395 -32.19019 -30.01710 -28.42295 -26.91671 -25.81933 -25.22685 -23.92216 -23.09861 -22.06820 -21.77261 -20.57239 -19.86146 -19.03772 -18.60928 -18.17648 -17.61335 -17.07950 -16.96629 -16.70533 -16.44687 -15.99574 -15.68288 -15.42639 -15.19538 -14.99527 -14.88442 -14.65502 -14.41925 -14.14083 -13.99841 -13.91458 -13.83278 -13.54125 -13.40141 -13.08540 -12.89935 -12.74969 -12.62889 -12.59524 -12.54549 -12.45935 -12.12502 -12.05204 -11.78583 -11.74565 -11.61804 -11.50351 -11.32303 -11.21191 -10.64381 -10.58139 -10.26190 -9.73474 -8.98237 -8.22355 -6.30623 1.11766 1.34395 1.39165 1.43608 1.46814 1.60492 1.76396 1.99839 2.37531 3.10030 3.33509 3.48594 3.72236 3.80106 3.83967 3.94785 4.00428 4.03745 4.07501 4.09117 4.20325 4.22490 4.25875 4.30672 4.37406 4.48299 4.57131 4.66620 4.76338 4.81489 4.86421 4.86963 4.87836 4.99455 5.04457 5.07943 5.12682 5.16109 5.21167 5.23432 5.43870 5.46364 5.59510 5.60903 5.73762 5.97916 6.01090 6.22090 6.32340 6.57476 6.82550 6.85838 7.24152 7.37251 8.88870 Molecular weight = 338.20amu Principal moments of inertia in cm(-1) A = 0.008976 B = 0.004512 C = 0.003498 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3118.542769 B = 6204.289700 C = 8002.301370 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.146 4.146 3 C 0.088 3.912 4 N -0.535 5.535 5 C 0.222 3.778 6 C -0.519 4.519 7 H 0.054 0.946 8 C 0.004 3.996 9 N -0.933 5.933 10 Si 0.964 3.036 11 H -0.278 1.278 12 H -0.278 1.278 13 H -0.261 1.261 14 C 0.048 3.952 15 C 0.499 3.501 16 O -0.533 6.533 17 N -0.610 5.610 18 C 0.100 3.900 19 C -0.132 4.132 20 C -0.109 4.109 21 C -0.116 4.116 22 C 0.155 3.845 23 H 0.116 0.884 24 C 0.470 3.530 25 O -0.532 6.532 26 O -0.369 6.369 27 C 0.065 3.935 28 C -0.141 4.141 29 H 0.118 0.882 30 H 0.089 0.911 31 H 0.116 0.884 32 H 0.066 0.934 33 H 0.048 0.952 34 H -0.006 1.006 35 H -0.031 1.031 36 H 0.264 0.736 37 H 0.071 0.929 38 H 0.124 0.876 39 H 0.092 0.908 40 H 0.097 0.903 41 H 0.111 0.889 42 H 0.060 0.940 43 H 0.093 0.907 44 H 0.086 0.914 45 H 0.057 0.943 46 H 0.096 0.904 47 H 0.033 0.967 48 H 0.075 0.925 49 H 0.085 0.915 50 H 0.052 0.948 51 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.765 -17.902 -3.013 21.633 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C -0.164 4.164 3 C -0.039 4.039 4 N -0.259 5.259 5 C 0.097 3.903 6 C -0.557 4.557 7 H 0.072 0.928 8 C -0.194 4.194 9 N -0.573 5.573 10 Si 0.789 3.211 11 H -0.204 1.204 12 H -0.203 1.203 13 H -0.186 1.186 14 C -0.083 4.083 15 C 0.288 3.712 16 O -0.409 6.409 17 N -0.349 5.349 18 C -0.020 4.020 19 C -0.170 4.170 20 C -0.147 4.147 21 C -0.154 4.154 22 C 0.050 3.950 23 H 0.134 0.866 24 C 0.314 3.686 25 O -0.421 6.421 26 O -0.286 6.286 27 C -0.008 4.008 28 C -0.197 4.197 29 H 0.136 0.864 30 H 0.107 0.893 31 H 0.134 0.866 32 H 0.084 0.916 33 H 0.066 0.934 34 H 0.012 0.988 35 H -0.013 1.013 36 H 0.073 0.927 37 H 0.089 0.911 38 H 0.142 0.858 39 H 0.110 0.890 40 H 0.115 0.885 41 H 0.129 0.871 42 H 0.079 0.921 43 H 0.112 0.888 44 H 0.105 0.895 45 H 0.076 0.924 46 H 0.114 0.886 47 H 0.052 0.948 48 H 0.093 0.907 49 H 0.104 0.896 50 H 0.071 0.929 51 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 11.008 -17.886 -1.964 21.094 hybrid contribution -0.672 1.365 0.098 1.525 sum 10.336 -16.521 -1.866 19.577 Atomic orbital electron populations 1.23912 0.95681 1.02294 1.00668 1.22884 0.96348 0.97466 0.99728 1.21166 0.95015 0.96641 0.91108 1.61618 1.12928 1.12545 1.38802 1.19245 0.95202 0.83191 0.92703 1.21352 0.96287 0.95948 1.42151 0.92761 1.25841 0.99016 0.98546 0.95999 1.70069 1.25183 1.12656 1.49421 0.85521 0.79353 0.77306 0.78964 1.20358 1.20259 1.18600 1.21976 0.93283 1.00034 0.93011 1.21326 0.80573 0.77079 0.92236 1.90728 1.64746 1.52934 1.32487 1.48276 1.21996 1.56907 1.07764 1.22206 0.98707 0.98322 0.82803 1.21968 1.01430 0.93543 1.00034 1.21524 0.98180 1.03440 0.91530 1.21915 1.01752 0.89717 1.02023 1.20939 0.94196 0.99424 0.80400 0.86591 1.23531 0.86499 0.75265 0.83276 1.90607 1.23261 1.50236 1.77952 1.86382 1.48137 1.62044 1.32069 1.23025 0.91068 1.00879 0.85859 1.21786 1.03054 0.98090 0.96807 0.86392 0.89303 0.86598 0.91565 0.93380 0.98816 1.01347 0.92719 0.91135 0.85840 0.88976 0.88464 0.87089 0.92132 0.88849 0.89531 0.92371 0.88602 0.94837 0.90709 0.89570 0.92911 0.88304 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -5.65 14.32 67.79 0.97 -4.68 16 2 C -0.15 -4.79 9.34 25.66 0.24 -4.55 16 3 C 0.09 3.48 5.23 85.56 0.45 3.93 16 4 N -0.53 -24.93 3.93 -909.92 -3.58 -28.51 16 5 C 0.22 12.71 4.37 85.56 0.37 13.09 16 6 C -0.52 -31.79 8.23 25.60 0.21 -31.58 16 7 H 0.05 3.33 7.32 -2.91 -0.02 3.31 16 8 C 0.00 0.23 5.46 84.65 0.46 0.69 16 9 N -0.93 -58.83 13.29 21.45 0.28 -58.54 16 10 Si 0.96 47.22 29.54 68.60 2.03 49.24 16 11 H -0.28 -13.62 7.11 99.48 0.71 -12.91 16 12 H -0.28 -13.02 7.11 99.48 0.71 -12.31 16 13 H -0.26 -12.06 7.11 99.48 0.71 -11.35 16 14 C 0.05 1.75 3.73 85.56 0.32 2.06 16 15 C 0.50 20.11 6.96 87.66 0.61 20.72 16 16 O -0.53 -27.82 11.32 22.60 0.26 -27.56 16 17 N -0.61 -17.68 2.97 -799.18 -2.38 -20.06 16 18 C 0.10 1.73 6.32 86.37 0.55 2.27 16 19 C -0.13 -1.52 6.08 30.67 0.19 -1.34 16 20 C -0.11 -1.20 5.88 30.62 0.18 -1.02 16 21 C -0.12 -2.19 5.31 30.67 0.16 -2.03 16 22 C 0.15 4.23 3.34 44.23 0.15 4.38 16 23 H 0.12 2.68 8.14 -2.39 -0.02 2.66 16 24 C 0.47 17.86 4.50 71.24 0.32 18.18 16 25 O -0.53 -24.08 14.35 29.78 0.43 -23.65 16 26 O -0.37 -13.84 10.22 -49.31 -0.50 -14.35 16 27 C 0.07 2.27 6.19 71.98 0.45 2.71 16 28 C -0.14 -3.63 10.29 71.98 0.74 -2.89 16 29 H 0.12 2.87 8.06 -2.91 -0.02 2.85 16 30 H 0.09 2.79 7.84 -2.91 -0.02 2.77 16 31 H 0.12 3.34 7.29 -2.91 -0.02 3.32 16 32 H 0.07 2.99 6.23 -2.39 -0.01 2.98 16 33 H 0.05 1.69 7.99 -2.39 -0.02 1.68 16 34 H -0.01 -0.41 6.94 -2.39 -0.02 -0.42 16 35 H -0.03 -1.83 8.12 -2.39 -0.02 -1.85 16 36 H 0.26 15.63 8.31 -92.71 -0.77 14.86 16 37 H 0.07 2.33 7.25 -2.38 -0.02 2.31 16 38 H 0.12 3.57 6.78 -2.39 -0.02 3.55 16 39 H 0.09 1.27 8.14 -2.39 -0.02 1.25 16 40 H 0.10 1.56 5.90 -2.39 -0.01 1.54 16 41 H 0.11 0.65 8.14 -2.38 -0.02 0.63 16 42 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16 43 H 0.09 0.70 8.14 -2.39 -0.02 0.68 16 44 H 0.09 0.71 8.14 -2.39 -0.02 0.69 16 45 H 0.06 1.38 7.92 -2.38 -0.02 1.36 16 46 H 0.10 1.47 8.14 -2.39 -0.02 1.45 16 47 H 0.03 1.43 8.13 -2.39 -0.02 1.41 16 48 H 0.07 2.32 8.13 -2.39 -0.02 2.30 16 49 H 0.09 1.79 8.14 -2.39 -0.02 1.77 16 50 H 0.05 1.52 8.14 -2.39 -0.02 1.51 16 51 H 0.10 2.09 8.14 -2.39 -0.02 2.07 16 Total: -1.00 -88.33 406.15 3.79 -84.53 By element: Atomic # 1 Polarization: 18.03 SS G_CDS: 0.89 Total: 18.92 kcal Atomic # 6 Polarization: 13.61 SS G_CDS: 6.36 Total: 19.97 kcal Atomic # 7 Polarization: -101.44 SS G_CDS: -5.67 Total: -107.11 kcal Atomic # 8 Polarization: -65.74 SS G_CDS: 0.18 Total: -65.56 kcal Atomic # 14 Polarization: 47.22 SS G_CDS: 2.03 Total: 49.24 kcal Total: -88.33 3.79 -84.53 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292068830.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.830 kcal (2) G-P(sol) polarization free energy of solvation -88.326 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.156 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.793 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.532 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.362 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds