Wall clock time and date at job start Tue Mar 31 2020 20:49:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31001 * 1 3 3 C 1.50701 * 120.00194 * 2 1 4 4 N 1.46896 * 109.47281 * 124.73543 * 3 2 1 5 5 C 1.46900 * 111.00205 * 199.74684 * 4 3 2 6 6 C 1.50701 * 109.47201 * 66.04308 * 5 4 3 7 7 H 1.07998 * 119.99904 * 0.02562 * 6 5 4 8 8 C 1.37880 * 119.99761 * 180.02562 * 6 5 4 9 9 N 1.31513 * 119.99804 * 180.02562 * 8 6 5 10 10 Si 1.86795 * 120.00364 * 359.97438 * 8 6 5 11 11 H 1.48506 * 109.47384 * 89.99880 * 10 8 6 12 12 H 1.48501 * 109.47457 * 210.00427 * 10 8 6 13 13 H 1.48504 * 109.46792 * 330.00083 * 10 8 6 14 14 C 1.46902 * 111.00247 * 75.78904 * 4 3 2 15 15 C 1.50698 * 109.47113 * 199.84097 * 14 4 3 16 16 O 1.21282 * 120.00046 * 356.25175 * 15 14 4 17 17 N 1.34775 * 119.99609 * 176.24923 * 15 14 4 18 18 C 1.46922 * 120.63360 * 0.02692 * 17 15 14 19 19 C 1.53197 * 108.77684 * 233.58832 * 18 17 15 20 20 C 1.53048 * 109.30726 * 305.35995 * 19 18 17 21 21 C 1.53036 * 109.53540 * 61.36627 * 20 19 18 22 22 H 1.09008 * 109.49826 * 58.58747 * 21 20 19 23 23 C 1.50708 * 109.49695 * 178.67824 * 21 20 19 24 24 O 1.20823 * 119.99531 * 359.84028 * 23 21 20 25 25 O 1.34229 * 120.00093 * 179.83999 * 23 21 20 26 26 C 1.45198 * 116.99993 * 180.02562 * 25 23 21 27 27 C 1.52995 * 109.47220 * 179.97438 * 26 25 23 28 28 C 1.46932 * 120.63130 * 179.97438 * 17 15 14 29 29 H 1.07995 * 120.00151 * 179.97438 * 1 2 3 30 30 H 1.08001 * 119.99633 * 0.02562 * 1 2 3 31 31 H 1.08001 * 119.99633 * 179.97438 * 2 1 3 32 32 H 1.09001 * 109.47250 * 4.73179 * 3 2 1 33 33 H 1.08997 * 109.47242 * 244.73792 * 3 2 1 34 34 H 1.08995 * 109.47515 * 186.04749 * 5 4 3 35 35 H 1.09007 * 109.46976 * 306.04816 * 5 4 3 36 36 H 0.96994 * 120.00390 * 179.97438 * 9 8 6 37 37 H 1.09002 * 109.46516 * 79.84398 * 14 4 3 38 38 H 1.08998 * 109.46655 * 319.84616 * 14 4 3 39 39 H 1.09006 * 109.58794 * 353.36991 * 18 17 15 40 40 H 1.08995 * 109.59018 * 113.79924 * 18 17 15 41 41 H 1.08991 * 109.50021 * 65.31185 * 19 18 17 42 42 H 1.08997 * 109.49772 * 185.38355 * 19 18 17 43 43 H 1.09001 * 109.45575 * 181.38708 * 20 19 18 44 44 H 1.08998 * 109.46350 * 301.34592 * 20 19 18 45 45 H 1.08998 * 109.46669 * 300.00036 * 26 25 23 46 46 H 1.08999 * 109.47545 * 59.99350 * 26 25 23 47 47 H 1.09005 * 109.47448 * 179.97438 * 27 26 25 48 48 H 1.08998 * 109.47498 * 299.99736 * 27 26 25 49 49 H 1.09004 * 109.46898 * 59.99712 * 27 26 25 50 50 H 1.08997 * 109.58786 * 246.20156 * 28 17 15 51 51 H 1.09004 * 109.58347 * 6.63181 * 28 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3051 0.0000 4 7 2.9918 1.3346 1.1381 5 6 3.3909 2.7120 1.4564 6 6 2.1927 3.4807 1.9510 7 1 1.2310 2.9944 2.0221 8 6 2.3243 4.8047 2.3126 9 7 1.2788 5.4753 2.7447 10 14 3.9878 5.6455 2.1902 11 1 4.1361 6.2561 0.8446 12 1 4.0852 6.7037 3.2275 13 1 5.0648 4.6450 2.4013 14 6 4.1673 0.4920 0.8808 15 6 4.8356 0.1495 2.1873 16 8 4.4184 0.6212 3.2238 17 7 5.8968 -0.6812 2.2039 18 6 6.4140 -1.2600 0.9565 19 6 6.4796 -2.7829 1.1097 20 6 7.3017 -3.1316 2.3526 21 6 6.6230 -2.5500 3.5948 22 1 5.6128 -2.9509 3.6788 23 6 7.4157 -2.9213 4.8215 24 8 8.4191 -3.5858 4.7140 25 8 7.0071 -2.5139 6.0335 26 6 7.8200 -2.9082 7.1702 27 6 7.2016 -2.3552 8.4557 28 6 6.5593 -1.0241 3.4698 29 1 -0.5400 -0.9352 -0.0004 30 1 -0.5399 0.9354 -0.0004 31 1 1.8500 -0.9354 0.0004 32 1 1.3583 2.1319 0.0848 33 1 2.6250 1.4005 -0.9293 34 1 4.1585 2.6984 2.2302 35 1 3.7861 3.1919 0.5610 36 1 1.3713 6.4066 2.9994 37 1 4.8687 1.0316 0.2444 38 1 3.8547 -0.4249 0.3811 39 1 5.7490 -1.0041 0.1316 40 1 7.4121 -0.8694 0.7587 41 1 5.4709 -3.1816 1.2170 42 1 6.9505 -3.2173 0.2279 43 1 7.3706 -4.2151 2.4501 44 1 8.3028 -2.7115 2.2555 45 1 7.8632 -3.9959 7.2260 46 1 8.8278 -2.5102 7.0517 47 1 7.8115 -2.6516 9.3091 48 1 7.1587 -1.2675 8.3996 49 1 6.1937 -2.7529 8.5743 50 1 7.5693 -0.6142 3.4764 51 1 5.9901 -0.6125 4.3033 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000292088043.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:49:07 Heat of formation + Delta-G solvation = -89.717033 kcal Electronic energy + Delta-G solvation = -30369.119344 eV Core-core repulsion = 26269.578142 eV Total energy + Delta-G solvation = -4099.541203 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.204 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.04836 -39.88627 -37.80171 -36.86635 -36.35578 -33.24063 -33.10144 -32.25406 -32.16367 -31.38953 -28.72082 -27.08465 -25.57372 -24.97146 -23.57248 -23.25069 -21.96208 -20.78294 -20.31501 -19.41225 -18.74235 -17.90279 -17.23800 -16.94410 -16.78970 -16.38991 -15.72667 -15.43439 -15.00086 -14.78830 -14.46889 -14.28990 -14.18531 -13.93028 -13.74508 -13.54392 -13.40314 -13.03615 -13.01673 -12.83966 -12.57859 -12.23481 -12.13778 -12.02318 -11.91926 -11.78439 -11.56304 -11.34401 -11.25569 -11.17236 -10.92966 -10.80277 -10.70631 -10.66985 -10.63987 -10.13342 -9.79877 -9.44093 -9.15140 -8.90754 -8.64739 -8.49141 -7.40935 -5.97268 -3.92810 1.89042 2.34646 2.70543 2.98614 3.00626 3.32258 3.40690 3.44797 4.23962 4.31656 4.47993 4.49325 4.63048 4.64193 4.68265 4.73564 4.77555 4.91914 4.95885 4.98920 5.16083 5.28571 5.34194 5.37665 5.38776 5.46963 5.48672 5.49921 5.55053 5.56172 5.60137 5.65823 5.67130 5.73265 5.82164 5.95628 5.99431 6.18301 6.27205 6.43303 6.50040 6.85889 6.96368 7.04762 7.27246 7.41806 7.47544 7.70062 7.89083 8.01634 8.54425 8.72618 9.11731 9.64764 11.16125 Molecular weight = 338.20amu Principal moments of inertia in cm(-1) A = 0.010154 B = 0.003155 C = 0.002729 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2756.760868 B = 8871.582326 C =10258.340848 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.138 4.138 3 C 0.083 3.917 4 N -0.506 5.506 5 C 0.163 3.837 6 C -0.500 4.500 7 H 0.081 0.919 8 C 0.069 3.931 9 N -0.902 5.902 10 Si 0.873 3.127 11 H -0.279 1.279 12 H -0.286 1.286 13 H -0.268 1.268 14 C 0.036 3.964 15 C 0.514 3.486 16 O -0.492 6.492 17 N -0.625 5.625 18 C 0.105 3.895 19 C -0.134 4.134 20 C -0.102 4.102 21 C -0.096 4.096 22 H 0.115 0.885 23 C 0.472 3.528 24 O -0.509 6.509 25 O -0.352 6.352 26 C 0.062 3.938 27 C -0.155 4.155 28 C 0.125 3.875 29 H 0.089 0.911 30 H 0.099 0.901 31 H 0.096 0.904 32 H 0.101 0.899 33 H 0.030 0.970 34 H 0.040 0.960 35 H -0.020 1.020 36 H 0.262 0.738 37 H 0.056 0.944 38 H 0.092 0.908 39 H 0.089 0.911 40 H 0.069 0.931 41 H 0.072 0.928 42 H 0.082 0.918 43 H 0.075 0.925 44 H 0.074 0.926 45 H 0.069 0.931 46 H 0.069 0.931 47 H 0.079 0.921 48 H 0.070 0.930 49 H 0.068 0.932 50 H 0.068 0.932 51 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.403 -19.954 -1.409 24.079 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C -0.156 4.156 3 C -0.044 4.044 4 N -0.230 5.230 5 C 0.037 3.963 6 C -0.539 4.539 7 H 0.099 0.901 8 C -0.132 4.132 9 N -0.541 5.541 10 Si 0.700 3.300 11 H -0.205 1.205 12 H -0.212 1.212 13 H -0.192 1.192 14 C -0.095 4.095 15 C 0.301 3.699 16 O -0.363 6.363 17 N -0.363 5.363 18 C -0.018 4.018 19 C -0.172 4.172 20 C -0.140 4.140 21 C -0.116 4.116 22 H 0.132 0.868 23 C 0.315 3.685 24 O -0.397 6.397 25 O -0.269 6.269 26 C -0.012 4.012 27 C -0.212 4.212 28 C 0.002 3.998 29 H 0.108 0.892 30 H 0.117 0.883 31 H 0.114 0.886 32 H 0.119 0.881 33 H 0.048 0.952 34 H 0.058 0.942 35 H -0.003 1.003 36 H 0.072 0.928 37 H 0.074 0.926 38 H 0.110 0.890 39 H 0.107 0.893 40 H 0.087 0.913 41 H 0.091 0.909 42 H 0.101 0.899 43 H 0.093 0.907 44 H 0.093 0.907 45 H 0.087 0.913 46 H 0.088 0.912 47 H 0.098 0.902 48 H 0.089 0.911 49 H 0.087 0.913 50 H 0.086 0.914 51 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges 13.152 -19.836 -0.334 23.802 hybrid contribution 1.541 0.592 -0.570 1.747 sum 14.693 -19.244 -0.904 24.229 Atomic orbital electron populations 1.23748 0.95973 1.01456 1.01790 1.22882 0.95969 0.98007 0.98761 1.21263 0.96001 0.96415 0.90746 1.61664 1.11568 1.13007 1.36741 1.20282 0.98177 0.83214 0.94583 1.20973 0.95649 0.94658 1.42592 0.90064 1.24853 0.96148 0.97248 0.94993 1.69887 1.29301 1.09861 1.45054 0.86900 0.85647 0.79613 0.77823 1.20469 1.21158 1.19246 1.21991 0.94476 0.99590 0.93477 1.20894 0.78789 0.77915 0.92275 1.90775 1.61545 1.49861 1.34105 1.48162 1.32393 1.48862 1.06836 1.21761 1.00213 0.93061 0.86760 1.21951 1.01253 0.95972 0.98064 1.21426 0.99242 1.01486 0.91850 1.21525 1.00833 0.99189 0.90038 0.86757 1.23569 0.83780 0.76367 0.84821 1.90653 1.25444 1.36520 1.87036 1.86573 1.53764 1.70803 1.15725 1.23053 0.94286 1.00153 0.83691 1.21823 1.02163 1.02784 0.94407 1.21333 0.98644 0.90861 0.88961 0.89223 0.88277 0.88610 0.88057 0.95157 0.94188 1.00283 0.92780 0.92649 0.89017 0.89255 0.91284 0.90938 0.89933 0.90673 0.90738 0.91294 0.91213 0.90246 0.91115 0.91293 0.91412 0.87439 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.88 14.32 29.01 0.42 -2.46 16 2 C -0.14 -2.16 9.33 -36.03 -0.34 -2.49 16 3 C 0.08 1.53 5.24 -4.98 -0.03 1.51 16 4 N -0.51 -10.62 4.00 -238.96 -0.96 -11.58 16 5 C 0.16 4.07 3.40 -4.97 -0.02 4.06 16 6 C -0.50 -14.60 8.79 -34.44 -0.30 -14.90 16 7 H 0.08 2.57 7.56 -52.49 -0.40 2.18 16 8 C 0.07 2.04 5.47 -17.82 -0.10 1.94 16 9 N -0.90 -28.21 13.96 55.43 0.77 -27.43 16 10 Si 0.87 22.23 27.47 -169.99 -4.67 17.56 16 11 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 12 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 13 H -0.27 -6.71 6.54 56.52 0.37 -6.34 16 14 C 0.04 0.59 3.68 -4.98 -0.02 0.57 16 15 C 0.51 8.84 7.43 -10.99 -0.08 8.76 16 16 O -0.49 -11.03 14.48 5.56 0.08 -10.95 16 17 N -0.62 -7.91 2.97 -172.74 -0.51 -8.42 16 18 C 0.11 0.90 6.34 -3.71 -0.02 0.88 16 19 C -0.13 -0.93 6.08 -26.60 -0.16 -1.09 16 20 C -0.10 -0.85 4.46 -26.69 -0.12 -0.96 16 21 C -0.10 -0.96 2.78 -91.63 -0.25 -1.22 16 22 H 0.11 1.12 8.14 -51.92 -0.42 0.70 16 23 C 0.47 5.39 7.26 36.01 0.26 5.65 16 24 O -0.51 -6.66 15.73 -18.75 -0.29 -6.96 16 25 O -0.35 -4.02 10.15 -39.25 -0.40 -4.42 16 26 C 0.06 0.55 6.19 37.15 0.23 0.78 16 27 C -0.15 -1.11 10.29 37.15 0.38 -0.73 16 28 C 0.13 1.51 5.65 -3.69 -0.02 1.49 16 29 H 0.09 1.14 8.06 -52.49 -0.42 0.71 16 30 H 0.10 1.57 7.84 -52.49 -0.41 1.16 16 31 H 0.10 1.30 7.29 -52.49 -0.38 0.92 16 32 H 0.10 2.16 6.23 -51.93 -0.32 1.84 16 33 H 0.03 0.50 8.00 -51.93 -0.42 0.08 16 34 H 0.04 1.08 5.66 -51.93 -0.29 0.78 16 35 H -0.02 -0.49 7.55 -51.92 -0.39 -0.89 16 36 H 0.26 7.69 8.31 -40.82 -0.34 7.35 16 37 H 0.06 0.82 7.93 -51.93 -0.41 0.41 16 38 H 0.09 1.17 6.17 -51.93 -0.32 0.85 16 39 H 0.09 0.68 5.91 -51.93 -0.31 0.37 16 40 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 41 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 42 H 0.08 0.42 8.14 -51.93 -0.42 -0.01 16 43 H 0.07 0.61 8.07 -51.93 -0.42 0.19 16 44 H 0.07 0.64 8.13 -51.93 -0.42 0.22 16 45 H 0.07 0.57 8.13 -51.93 -0.42 0.15 16 46 H 0.07 0.60 8.13 -51.93 -0.42 0.18 16 47 H 0.08 0.41 8.14 -51.93 -0.42 -0.02 16 48 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 49 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 50 H 0.07 0.76 8.14 -51.93 -0.42 0.33 16 51 H 0.11 1.55 7.01 -51.93 -0.36 1.19 16 LS Contribution 407.30 15.07 6.14 6.14 Total: -1.00 -36.10 407.30 -8.69 -44.78 By element: Atomic # 1 Polarization: 8.18 SS G_CDS: -8.68 Total: -0.49 kcal Atomic # 6 Polarization: 1.95 SS G_CDS: -0.17 Total: 1.78 kcal Atomic # 7 Polarization: -46.73 SS G_CDS: -0.70 Total: -47.43 kcal Atomic # 8 Polarization: -21.72 SS G_CDS: -0.61 Total: -22.33 kcal Atomic # 14 Polarization: 22.23 SS G_CDS: -4.67 Total: 17.56 kcal Total LS contribution 6.14 Total: 6.14 kcal Total: -36.10 -8.69 -44.78 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292088043.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.935 kcal (2) G-P(sol) polarization free energy of solvation -36.097 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.032 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.685 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.782 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.717 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds