Wall clock time and date at job start Tue Mar 31 2020 21:18:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45205 * 1 3 3 C 1.34223 * 117.00016 * 2 1 4 4 O 1.20825 * 119.99909 * 0.02562 * 3 2 1 5 5 C 1.50698 * 120.00281 * 179.97438 * 3 2 1 6 6 H 1.09001 * 115.55415 * 34.30231 * 5 3 2 7 7 C 1.53036 * 117.50358 * 248.61109 * 5 3 2 8 8 C 1.52743 * 117.50740 * 180.02562 * 5 3 2 9 9 C 1.53218 * 117.84020 * 215.21661 * 8 5 3 10 10 C 1.53273 * 108.61422 * 197.00345 * 9 8 5 11 11 N 1.46806 * 109.44495 * 304.40811 * 10 9 8 12 12 C 1.46895 * 111.00026 * 189.20105 * 11 10 9 13 13 C 1.53001 * 109.47361 * 65.30195 * 12 11 10 14 14 C 1.50697 * 109.47361 * 180.02562 * 13 12 11 15 15 O 1.21278 * 119.99964 * 0.02562 * 14 13 12 16 16 N 1.34776 * 119.99800 * 179.97438 * 14 13 12 17 17 C 1.46506 * 120.00311 * 0.02562 * 16 14 13 18 18 C 1.46498 * 120.00142 * 179.97438 * 16 14 13 19 19 C 1.50703 * 109.47101 * 89.99827 * 18 16 14 20 20 H 1.07990 * 119.99889 * 0.02562 * 19 18 16 21 21 C 1.37880 * 120.00028 * 180.02562 * 19 18 16 22 22 N 1.31508 * 120.00037 * 180.02562 * 21 19 18 23 23 Si 1.86802 * 119.99981 * 0.02562 * 21 19 18 24 24 H 1.48496 * 109.47025 * 90.00056 * 23 21 19 25 25 H 1.48495 * 109.47127 * 210.00092 * 23 21 19 26 26 H 1.48502 * 109.47131 * 330.00284 * 23 21 19 27 27 C 1.46811 * 111.57899 * 64.82748 * 11 10 9 28 28 C 1.53211 * 117.83895 * 359.73247 * 8 5 3 29 29 H 1.09005 * 109.46860 * 179.97438 * 1 2 3 30 30 H 1.08995 * 109.47243 * 300.00097 * 1 2 3 31 31 H 1.08995 * 109.46676 * 60.00122 * 1 2 3 32 32 H 1.09000 * 117.50992 * 359.97438 * 7 5 3 33 33 H 1.09005 * 117.50742 * 145.05531 * 7 5 3 34 34 H 1.09003 * 109.61092 * 316.73953 * 9 8 5 35 35 H 1.08990 * 109.61610 * 77.26360 * 9 8 5 36 36 H 1.08996 * 109.47300 * 184.41335 * 10 9 8 37 37 H 1.09003 * 109.47216 * 64.40144 * 10 9 8 38 38 H 1.09000 * 109.47617 * 185.30364 * 12 11 10 39 39 H 1.09003 * 109.47426 * 305.30104 * 12 11 10 40 40 H 1.09009 * 109.47006 * 300.00031 * 13 12 11 41 41 H 1.09003 * 109.46924 * 59.99602 * 13 12 11 42 42 H 1.08994 * 109.46803 * 89.99802 * 17 16 14 43 43 H 1.08995 * 109.47144 * 209.99944 * 17 16 14 44 44 H 1.09001 * 109.46649 * 330.00244 * 17 16 14 45 45 H 1.08999 * 109.47859 * 209.99979 * 18 16 14 46 46 H 1.09000 * 109.47106 * 330.00317 * 18 16 14 47 47 H 0.97003 * 120.00208 * 180.02562 * 22 21 19 48 48 H 1.08994 * 109.47705 * 175.18013 * 27 11 10 49 49 H 1.09003 * 109.47508 * 55.16266 * 27 11 10 50 50 H 1.09004 * 109.61405 * 282.73379 * 28 8 5 51 51 H 1.08999 * 109.61621 * 43.08507 * 28 8 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1959 0.0000 4 8 1.4033 2.2092 0.0005 5 6 3.5663 1.2749 0.0006 6 1 4.0786 0.4882 -0.5532 7 6 4.2456 1.8065 1.2647 8 6 4.1999 2.6647 0.0012 9 6 5.5041 2.8569 -0.7796 10 6 6.1704 4.1540 -0.3074 11 7 5.2285 5.2700 -0.4575 12 6 5.8960 6.5573 -0.2232 13 6 6.9431 6.7948 -1.3133 14 6 7.6283 8.1152 -1.0727 15 8 7.3109 8.7988 -0.1226 16 7 8.5946 8.5358 -1.9127 17 6 8.9785 7.7097 -3.0602 18 6 9.2604 9.8197 -1.6792 19 6 10.4666 9.6076 -0.8009 20 1 10.7127 8.6157 -0.4520 21 6 11.2558 10.6800 -0.4428 22 7 12.3085 10.4949 0.3232 23 14 10.8295 12.3959 -1.0458 24 1 9.9250 13.0534 -0.0687 25 1 12.0734 13.1950 -1.1844 26 1 10.1512 12.3032 -2.3635 27 6 4.0626 5.1144 0.4211 28 6 3.2639 3.8777 -0.0052 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8899 31 1 -0.3632 0.5138 -0.8900 32 1 3.6041 2.0996 2.0957 33 1 5.2052 1.3700 1.5421 34 1 6.1700 2.0144 -0.5926 35 1 5.2860 2.9246 -1.8453 36 1 7.0594 4.3454 -0.9082 37 1 6.4540 4.0561 0.7405 38 1 5.1580 7.3591 -0.2476 39 1 6.3835 6.5419 0.7516 40 1 7.6812 5.9930 -1.2889 41 1 6.4556 6.8102 -2.2881 42 1 8.3666 7.9774 -3.9214 43 1 10.0295 7.8791 -3.2944 44 1 8.8250 6.6580 -2.8181 45 1 9.5753 10.2445 -2.6323 46 1 8.5687 10.5036 -1.1874 47 1 12.8636 11.2494 0.5755 48 1 3.4304 5.9990 0.3461 49 1 4.3975 4.9932 1.4513 50 1 2.8658 4.0274 -1.0089 51 1 2.4434 3.7105 0.6926 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000357012425.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:18:53 Heat of formation + Delta-G solvation = -83.825073 kcal Electronic energy + Delta-G solvation = -29491.400123 eV Core-core repulsion = 25392.114414 eV Total energy + Delta-G solvation = -4099.285708 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.204 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.24954 -39.63972 -38.96755 -37.18772 -36.23294 -34.88950 -32.65087 -32.05840 -31.16618 -29.44249 -28.46291 -27.80831 -25.85819 -24.72966 -24.04230 -23.43315 -22.30644 -21.15676 -20.68625 -18.94841 -18.34646 -18.01893 -16.95022 -16.93322 -16.76811 -16.50511 -15.59552 -15.47224 -15.34278 -14.92696 -14.72214 -14.49507 -14.16668 -14.00835 -13.51442 -13.47891 -13.34140 -13.12054 -12.72570 -12.64286 -12.41061 -12.33371 -12.24700 -12.06196 -11.98564 -11.81041 -11.67808 -11.40533 -11.29062 -11.17171 -11.03862 -10.90770 -10.70240 -10.50331 -10.42041 -10.21921 -10.13165 -10.02192 -9.53390 -8.97254 -8.58087 -8.32384 -7.67321 -6.08025 -4.06580 1.71387 2.24505 3.28048 3.30103 3.36070 3.37994 3.39390 3.65317 4.09857 4.14053 4.23908 4.33142 4.40584 4.59865 4.62406 4.68143 4.76309 4.94364 5.04116 5.09756 5.14347 5.23929 5.24049 5.28175 5.29387 5.32914 5.34883 5.44375 5.50173 5.59661 5.63562 5.69084 5.80271 5.86074 5.88260 5.91229 5.95388 6.04857 6.09956 6.19170 6.19443 6.27752 6.71897 6.96477 7.05273 7.08455 7.36527 7.40016 7.62448 8.28151 8.48191 8.93897 9.01866 9.52538 11.05378 Molecular weight = 338.20amu Principal moments of inertia in cm(-1) A = 0.032724 B = 0.001826 C = 0.001813 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 855.440964 B =15330.895455 C =15438.178526 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.359 6.359 3 C 0.491 3.509 4 O -0.498 6.498 5 C -0.168 4.168 6 H 0.135 0.865 7 C -0.143 4.143 8 C -0.078 4.078 9 C -0.079 4.079 10 C 0.054 3.946 11 N -0.541 5.541 12 C 0.073 3.927 13 C -0.134 4.134 14 C 0.507 3.493 15 O -0.545 6.545 16 N -0.599 5.599 17 C 0.084 3.916 18 C 0.215 3.785 19 C -0.528 4.528 20 H 0.074 0.926 21 C 0.071 3.929 22 N -0.898 5.898 23 Si 0.877 3.123 24 H -0.274 1.274 25 H -0.285 1.285 26 H -0.266 1.266 27 C 0.058 3.942 28 C -0.077 4.077 29 H 0.101 0.899 30 H 0.063 0.937 31 H 0.063 0.937 32 H 0.101 0.899 33 H 0.111 0.889 34 H 0.071 0.929 35 H 0.080 0.920 36 H 0.082 0.918 37 H 0.036 0.964 38 H 0.082 0.918 39 H 0.043 0.957 40 H 0.087 0.913 41 H 0.094 0.906 42 H 0.045 0.955 43 H 0.074 0.926 44 H 0.060 0.940 45 H 0.029 0.971 46 H 0.036 0.964 47 H 0.264 0.736 48 H 0.077 0.923 49 H 0.033 0.967 50 H 0.076 0.924 51 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.235 -23.147 -3.737 30.971 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.275 6.275 3 C 0.335 3.665 4 O -0.386 6.386 5 C -0.187 4.187 6 H 0.153 0.847 7 C -0.180 4.180 8 C -0.079 4.079 9 C -0.117 4.117 10 C -0.074 4.074 11 N -0.266 5.266 12 C -0.055 4.055 13 C -0.174 4.174 14 C 0.293 3.707 15 O -0.423 6.423 16 N -0.331 5.331 17 C -0.060 4.060 18 C 0.094 3.906 19 C -0.567 4.567 20 H 0.092 0.908 21 C -0.131 4.131 22 N -0.537 5.537 23 Si 0.704 3.296 24 H -0.199 1.199 25 H -0.211 1.211 26 H -0.191 1.191 27 C -0.070 4.070 28 C -0.114 4.114 29 H 0.119 0.881 30 H 0.081 0.919 31 H 0.082 0.918 32 H 0.119 0.881 33 H 0.129 0.871 34 H 0.090 0.910 35 H 0.099 0.901 36 H 0.100 0.900 37 H 0.055 0.945 38 H 0.100 0.900 39 H 0.062 0.938 40 H 0.105 0.895 41 H 0.112 0.888 42 H 0.064 0.936 43 H 0.093 0.907 44 H 0.079 0.921 45 H 0.047 0.953 46 H 0.054 0.946 47 H 0.074 0.926 48 H 0.095 0.905 49 H 0.052 0.948 50 H 0.095 0.905 51 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -20.640 -22.378 -3.632 30.659 hybrid contribution 0.123 0.726 0.500 0.890 sum -20.517 -21.652 -3.132 29.993 Atomic orbital electron populations 1.23279 0.76164 1.03723 1.02654 1.86496 1.23468 1.33505 1.84053 1.22730 0.90529 0.81215 0.72072 1.90661 1.66995 1.35764 1.45156 1.21866 0.88108 1.01780 1.06914 0.84750 1.23214 1.01964 1.01881 0.90893 1.21742 0.97558 0.89705 0.98869 1.21283 0.92983 0.97245 1.00140 1.22131 0.95250 0.90207 0.99826 1.61755 1.08347 1.02046 1.54473 1.21783 0.96314 0.90400 0.97010 1.21651 0.98464 0.96144 1.01184 1.20357 0.80169 0.87534 0.82611 1.90663 1.64803 1.57395 1.29394 1.47842 1.36608 1.22254 1.26416 1.21654 1.01478 0.94546 0.88291 1.19652 0.93174 0.81040 0.96729 1.21338 1.08290 0.96559 1.30489 0.90832 1.24866 0.94715 0.98918 0.94588 1.69897 1.16183 1.31500 1.36090 0.86834 0.78067 0.84786 0.79902 1.19927 1.21076 1.19062 1.22139 0.92207 0.98636 0.94056 1.21466 0.95774 0.90520 1.03671 0.88078 0.91855 0.91785 0.88070 0.87073 0.91037 0.90138 0.89961 0.94526 0.89994 0.93821 0.89460 0.88781 0.93638 0.90692 0.92102 0.95284 0.94589 0.92588 0.90474 0.94840 0.90530 0.89347 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.20 10.56 101.05 1.07 1.27 16 2 O -0.36 -2.99 10.57 -39.24 -0.41 -3.40 16 3 C 0.49 4.57 7.72 36.00 0.28 4.84 16 4 O -0.50 -5.69 12.88 -18.75 -0.24 -5.93 16 5 C -0.17 -1.26 6.03 -91.89 -0.55 -1.82 16 6 H 0.13 0.78 8.14 -51.93 -0.42 0.36 16 7 C -0.14 -1.00 9.63 -26.81 -0.26 -1.26 16 8 C -0.08 -0.66 2.02 -154.52 -0.31 -0.97 16 9 C -0.08 -0.63 5.87 -26.48 -0.16 -0.78 16 10 C 0.05 0.54 5.35 -3.73 -0.02 0.52 16 11 N -0.54 -6.29 4.59 -234.44 -1.08 -7.36 16 12 C 0.07 1.03 4.25 -3.83 -0.02 1.01 16 13 C -0.13 -1.93 4.18 -27.88 -0.12 -2.05 16 14 C 0.51 10.29 7.67 -10.99 -0.08 10.20 16 15 O -0.54 -13.43 15.56 5.56 0.09 -13.34 16 16 N -0.60 -12.41 2.86 -182.96 -0.52 -12.93 16 17 C 0.08 1.28 10.24 59.85 0.61 1.90 16 18 C 0.21 5.32 4.23 -5.19 -0.02 5.30 16 19 C -0.53 -15.34 9.94 -34.44 -0.34 -15.68 16 20 H 0.07 2.33 8.06 -52.49 -0.42 1.91 16 21 C 0.07 2.10 5.47 -17.82 -0.10 2.00 16 22 N -0.90 -27.86 13.96 55.43 0.77 -27.09 16 23 Si 0.88 21.79 27.47 -169.99 -4.67 17.12 16 24 H -0.27 -6.85 7.11 56.52 0.40 -6.45 16 25 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 26 H -0.27 -6.22 6.54 56.52 0.37 -5.85 16 27 C 0.06 0.63 5.49 -3.73 -0.02 0.61 16 28 C -0.08 -0.78 4.33 -26.48 -0.11 -0.89 16 29 H 0.10 0.30 8.14 -51.93 -0.42 -0.12 16 30 H 0.06 0.35 8.13 -51.93 -0.42 -0.07 16 31 H 0.06 0.36 8.13 -51.93 -0.42 -0.06 16 32 H 0.10 0.74 8.14 -51.93 -0.42 0.32 16 33 H 0.11 0.62 8.14 -51.93 -0.42 0.20 16 34 H 0.07 0.45 8.08 -51.93 -0.42 0.03 16 35 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 36 H 0.08 0.80 6.07 -51.93 -0.32 0.49 16 37 H 0.04 0.38 8.12 -51.93 -0.42 -0.04 16 38 H 0.08 1.23 7.90 -51.93 -0.41 0.82 16 39 H 0.04 0.69 8.08 -51.93 -0.42 0.27 16 40 H 0.09 1.13 5.61 -51.92 -0.29 0.84 16 41 H 0.09 1.19 8.11 -51.93 -0.42 0.77 16 42 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 43 H 0.07 1.19 8.07 -51.93 -0.42 0.77 16 44 H 0.06 0.76 6.44 -51.93 -0.33 0.43 16 45 H 0.03 0.68 7.13 -51.93 -0.37 0.31 16 46 H 0.04 0.95 6.85 -51.93 -0.36 0.60 16 47 H 0.26 7.65 8.31 -40.82 -0.34 7.31 16 48 H 0.08 0.85 7.95 -51.93 -0.41 0.43 16 49 H 0.03 0.37 8.12 -51.93 -0.42 -0.05 16 50 H 0.08 0.86 8.12 -51.93 -0.42 0.44 16 51 H 0.09 0.96 5.99 -51.93 -0.31 0.64 16 LS Contribution 403.75 15.07 6.08 6.08 Total: -1.00 -35.63 403.75 -8.85 -44.48 By element: Atomic # 1 Polarization: 6.90 SS G_CDS: -8.72 Total: -1.82 kcal Atomic # 6 Polarization: 4.36 SS G_CDS: -0.16 Total: 4.20 kcal Atomic # 7 Polarization: -46.56 SS G_CDS: -0.82 Total: -47.38 kcal Atomic # 8 Polarization: -22.11 SS G_CDS: -0.57 Total: -22.68 kcal Atomic # 14 Polarization: 21.79 SS G_CDS: -4.67 Total: 17.12 kcal Total LS contribution 6.08 Total: 6.08 kcal Total: -35.63 -8.85 -44.48 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000357012425.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.345 kcal (2) G-P(sol) polarization free energy of solvation -35.629 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.974 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.851 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.480 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.825 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds