Wall clock time and date at job start Tue Mar 31 2020 21:18:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45205 * 1 3 3 C 1.34223 * 117.00016 * 2 1 4 4 O 1.20825 * 119.99909 * 0.02562 * 3 2 1 5 5 C 1.50698 * 120.00281 * 179.97438 * 3 2 1 6 6 H 1.09001 * 115.55415 * 34.30231 * 5 3 2 7 7 C 1.53036 * 117.50358 * 248.61109 * 5 3 2 8 8 C 1.52743 * 117.50740 * 180.02562 * 5 3 2 9 9 C 1.53218 * 117.84020 * 215.21661 * 8 5 3 10 10 C 1.53273 * 108.61422 * 197.00345 * 9 8 5 11 11 N 1.46806 * 109.44495 * 304.40811 * 10 9 8 12 12 C 1.46895 * 111.00026 * 189.20105 * 11 10 9 13 13 C 1.53001 * 109.47361 * 65.30195 * 12 11 10 14 14 C 1.50697 * 109.47361 * 180.02562 * 13 12 11 15 15 O 1.21278 * 119.99964 * 0.02562 * 14 13 12 16 16 N 1.34776 * 119.99800 * 179.97438 * 14 13 12 17 17 C 1.46506 * 120.00311 * 0.02562 * 16 14 13 18 18 C 1.46498 * 120.00142 * 179.97438 * 16 14 13 19 19 C 1.50703 * 109.47101 * 89.99827 * 18 16 14 20 20 H 1.07990 * 119.99889 * 0.02562 * 19 18 16 21 21 C 1.37880 * 120.00028 * 180.02562 * 19 18 16 22 22 N 1.31508 * 120.00037 * 180.02562 * 21 19 18 23 23 Si 1.86802 * 119.99981 * 0.02562 * 21 19 18 24 24 H 1.48496 * 109.47025 * 90.00056 * 23 21 19 25 25 H 1.48495 * 109.47127 * 210.00092 * 23 21 19 26 26 H 1.48502 * 109.47131 * 330.00284 * 23 21 19 27 27 C 1.46811 * 111.57899 * 64.82748 * 11 10 9 28 28 C 1.53211 * 117.83895 * 359.73247 * 8 5 3 29 29 H 1.09005 * 109.46860 * 179.97438 * 1 2 3 30 30 H 1.08995 * 109.47243 * 300.00097 * 1 2 3 31 31 H 1.08995 * 109.46676 * 60.00122 * 1 2 3 32 32 H 1.09000 * 117.50992 * 359.97438 * 7 5 3 33 33 H 1.09005 * 117.50742 * 145.05531 * 7 5 3 34 34 H 1.09003 * 109.61092 * 316.73953 * 9 8 5 35 35 H 1.08990 * 109.61610 * 77.26360 * 9 8 5 36 36 H 1.08996 * 109.47300 * 184.41335 * 10 9 8 37 37 H 1.09003 * 109.47216 * 64.40144 * 10 9 8 38 38 H 1.09000 * 109.47617 * 185.30364 * 12 11 10 39 39 H 1.09003 * 109.47426 * 305.30104 * 12 11 10 40 40 H 1.09009 * 109.47006 * 300.00031 * 13 12 11 41 41 H 1.09003 * 109.46924 * 59.99602 * 13 12 11 42 42 H 1.08994 * 109.46803 * 89.99802 * 17 16 14 43 43 H 1.08995 * 109.47144 * 209.99944 * 17 16 14 44 44 H 1.09001 * 109.46649 * 330.00244 * 17 16 14 45 45 H 1.08999 * 109.47859 * 209.99979 * 18 16 14 46 46 H 1.09000 * 109.47106 * 330.00317 * 18 16 14 47 47 H 0.97003 * 120.00208 * 180.02562 * 22 21 19 48 48 H 1.08994 * 109.47705 * 175.18013 * 27 11 10 49 49 H 1.09003 * 109.47508 * 55.16266 * 27 11 10 50 50 H 1.09004 * 109.61405 * 282.73379 * 28 8 5 51 51 H 1.08999 * 109.61621 * 43.08507 * 28 8 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1959 0.0000 4 8 1.4033 2.2092 0.0005 5 6 3.5663 1.2749 0.0006 6 1 4.0786 0.4882 -0.5532 7 6 4.2456 1.8065 1.2647 8 6 4.1999 2.6647 0.0012 9 6 5.5041 2.8569 -0.7796 10 6 6.1704 4.1540 -0.3074 11 7 5.2285 5.2700 -0.4575 12 6 5.8960 6.5573 -0.2232 13 6 6.9431 6.7948 -1.3133 14 6 7.6283 8.1152 -1.0727 15 8 7.3109 8.7988 -0.1226 16 7 8.5946 8.5358 -1.9127 17 6 8.9785 7.7097 -3.0602 18 6 9.2604 9.8197 -1.6792 19 6 10.4666 9.6076 -0.8009 20 1 10.7127 8.6157 -0.4520 21 6 11.2558 10.6800 -0.4428 22 7 12.3085 10.4949 0.3232 23 14 10.8295 12.3959 -1.0458 24 1 9.9250 13.0534 -0.0687 25 1 12.0734 13.1950 -1.1844 26 1 10.1512 12.3032 -2.3635 27 6 4.0626 5.1144 0.4211 28 6 3.2639 3.8777 -0.0052 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8899 31 1 -0.3632 0.5138 -0.8900 32 1 3.6041 2.0996 2.0957 33 1 5.2052 1.3700 1.5421 34 1 6.1700 2.0144 -0.5926 35 1 5.2860 2.9246 -1.8453 36 1 7.0594 4.3454 -0.9082 37 1 6.4540 4.0561 0.7405 38 1 5.1580 7.3591 -0.2476 39 1 6.3835 6.5419 0.7516 40 1 7.6812 5.9930 -1.2889 41 1 6.4556 6.8102 -2.2881 42 1 8.3666 7.9774 -3.9214 43 1 10.0295 7.8791 -3.2944 44 1 8.8250 6.6580 -2.8181 45 1 9.5753 10.2445 -2.6323 46 1 8.5687 10.5036 -1.1874 47 1 12.8636 11.2494 0.5755 48 1 3.4304 5.9990 0.3461 49 1 4.3975 4.9932 1.4513 50 1 2.8658 4.0274 -1.0089 51 1 2.4434 3.7105 0.6926 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000357012425.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:18:52 Heat of formation + Delta-G solvation = -107.676502 kcal Electronic energy + Delta-G solvation = -29492.434398 eV Core-core repulsion = 25392.114414 eV Total energy + Delta-G solvation = -4100.319984 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.204 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -41.92847 -40.83288 -40.09251 -37.99684 -37.01885 -36.58553 -34.72174 -33.25551 -31.92536 -30.86310 -29.53593 -28.73092 -27.30006 -25.45558 -25.16377 -24.41446 -23.63090 -22.31725 -21.38466 -19.89913 -19.64589 -19.14880 -18.68794 -18.07963 -17.50743 -17.29631 -17.06461 -16.83252 -16.42484 -16.05014 -15.91476 -15.59454 -15.22441 -14.81533 -14.74953 -14.58617 -14.29854 -14.11529 -14.03471 -13.79501 -13.63601 -13.50991 -13.41400 -13.24311 -13.02195 -12.84358 -12.76392 -12.61878 -12.56907 -12.35943 -12.10922 -12.06069 -11.94196 -11.78877 -11.74892 -11.57253 -11.12042 -10.91961 -10.83749 -10.73844 -10.63995 -9.37794 -9.29021 -8.34579 -6.39475 1.03550 1.32319 1.36417 1.44940 1.68432 1.82228 2.28769 2.30823 2.67709 2.97633 3.00334 3.51059 3.62504 3.73779 3.81856 3.90875 3.94803 4.06220 4.13096 4.28659 4.30319 4.32006 4.41295 4.42547 4.50715 4.55467 4.64238 4.64822 4.69209 4.69644 4.80172 4.83450 4.86540 4.88411 4.95676 4.97242 5.00856 5.00923 5.03914 5.11423 5.16044 5.28548 5.37145 5.45932 5.50963 5.63486 6.05390 6.17732 6.23786 6.61595 6.72140 6.73662 7.21366 7.43977 8.82270 Molecular weight = 338.20amu Principal moments of inertia in cm(-1) A = 0.032724 B = 0.001826 C = 0.001813 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 855.440964 B =15330.895455 C =15438.178526 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.363 6.363 3 C 0.487 3.513 4 O -0.527 6.527 5 C -0.161 4.161 6 H 0.159 0.841 7 C -0.134 4.134 8 C -0.093 4.093 9 C -0.070 4.070 10 C 0.048 3.952 11 N -0.536 5.536 12 C 0.080 3.920 13 C -0.115 4.115 14 C 0.496 3.504 15 O -0.600 6.600 16 N -0.608 5.608 17 C 0.077 3.923 18 C 0.222 3.778 19 C -0.537 4.537 20 H 0.029 0.971 21 C 0.010 3.990 22 N -0.945 5.945 23 Si 0.948 3.052 24 H -0.278 1.278 25 H -0.274 1.274 26 H -0.238 1.238 27 C 0.058 3.942 28 C -0.066 4.066 29 H 0.130 0.870 30 H 0.060 0.940 31 H 0.061 0.939 32 H 0.094 0.906 33 H 0.133 0.867 34 H 0.097 0.903 35 H 0.082 0.918 36 H 0.089 0.911 37 H 0.030 0.970 38 H 0.067 0.933 39 H 0.017 0.983 40 H 0.110 0.890 41 H 0.124 0.876 42 H 0.079 0.921 43 H 0.064 0.936 44 H 0.092 0.908 45 H 0.050 0.950 46 H 0.017 0.983 47 H 0.268 0.732 48 H 0.069 0.931 49 H 0.029 0.971 50 H 0.062 0.938 51 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.865 -24.817 -5.910 32.956 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.279 6.279 3 C 0.332 3.668 4 O -0.417 6.417 5 C -0.179 4.179 6 H 0.176 0.824 7 C -0.171 4.171 8 C -0.093 4.093 9 C -0.107 4.107 10 C -0.080 4.080 11 N -0.261 5.261 12 C -0.048 4.048 13 C -0.155 4.155 14 C 0.285 3.715 15 O -0.482 6.482 16 N -0.339 5.339 17 C -0.065 4.065 18 C 0.099 3.901 19 C -0.575 4.575 20 H 0.047 0.953 21 C -0.188 4.188 22 N -0.585 5.585 23 Si 0.771 3.229 24 H -0.204 1.204 25 H -0.199 1.199 26 H -0.161 1.161 27 C -0.070 4.070 28 C -0.104 4.104 29 H 0.148 0.852 30 H 0.079 0.921 31 H 0.080 0.920 32 H 0.112 0.888 33 H 0.151 0.849 34 H 0.115 0.885 35 H 0.100 0.900 36 H 0.107 0.893 37 H 0.049 0.951 38 H 0.085 0.915 39 H 0.036 0.964 40 H 0.128 0.872 41 H 0.142 0.858 42 H 0.098 0.902 43 H 0.083 0.917 44 H 0.110 0.890 45 H 0.068 0.932 46 H 0.035 0.965 47 H 0.077 0.923 48 H 0.088 0.912 49 H 0.047 0.953 50 H 0.081 0.919 51 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -21.276 -24.113 -5.854 32.686 hybrid contribution 0.277 1.131 1.241 1.701 sum -20.999 -22.983 -4.613 31.472 Atomic orbital electron populations 1.23524 0.74864 1.05617 1.02417 1.86489 1.24838 1.32953 1.83660 1.23141 0.91335 0.81072 0.71277 1.90654 1.67788 1.36689 1.46574 1.21964 0.87087 1.01552 1.07334 0.82393 1.23304 1.02673 1.00856 0.90246 1.21699 0.97696 0.89446 1.00492 1.21252 0.92772 0.96764 0.99919 1.22278 0.95338 0.90551 0.99794 1.61793 1.08504 1.01457 1.54307 1.21600 0.95842 0.91567 0.95800 1.21574 0.98512 0.92925 1.02452 1.21402 0.79767 0.88910 0.81446 1.90632 1.66509 1.59354 1.31690 1.47984 1.36291 1.21641 1.28029 1.21984 1.01535 0.95534 0.87418 1.19329 0.91129 0.83247 0.96362 1.21577 1.09984 0.94768 1.31194 0.95273 1.25862 0.94408 1.03845 0.94682 1.70046 1.17583 1.33146 1.37720 0.85707 0.78228 0.78565 0.80398 1.20375 1.19887 1.16082 1.22142 0.92063 0.99000 0.93806 1.21277 0.95688 0.91031 1.02391 0.85158 0.92128 0.92048 0.88781 0.84940 0.88456 0.89991 0.89260 0.95141 0.91460 0.96424 0.87222 0.85794 0.90242 0.91674 0.88966 0.93177 0.96535 0.92275 0.91215 0.95281 0.91908 0.90364 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.29 10.56 113.37 1.20 1.49 16 2 O -0.36 -5.53 10.57 -51.35 -0.54 -6.07 16 3 C 0.49 8.53 7.72 71.24 0.55 9.08 16 4 O -0.53 -12.01 12.88 21.97 0.28 -11.72 16 5 C -0.16 -2.05 6.03 -11.61 -0.07 -2.12 16 6 H 0.16 1.27 8.14 -2.39 -0.02 1.25 16 7 C -0.13 -1.60 9.63 30.54 0.29 -1.31 16 8 C -0.09 -1.39 2.02 -52.19 -0.11 -1.50 16 9 C -0.07 -0.90 5.87 30.76 0.18 -0.72 16 10 C 0.05 0.86 5.35 86.41 0.46 1.32 16 11 N -0.54 -11.93 4.59 -895.62 -4.11 -16.04 16 12 C 0.08 2.27 4.25 86.30 0.37 2.63 16 13 C -0.11 -3.10 4.18 29.85 0.12 -2.98 16 14 C 0.50 20.02 7.67 87.66 0.67 20.69 16 15 O -0.60 -30.57 15.56 -3.02 -0.05 -30.61 16 16 N -0.61 -24.62 2.86 -851.14 -2.43 -27.05 16 17 C 0.08 2.13 10.24 127.77 1.31 3.44 16 18 C 0.22 10.94 4.23 85.63 0.36 11.30 16 19 C -0.54 -31.93 9.94 25.60 0.25 -31.68 16 20 H 0.03 1.93 8.06 -2.92 -0.02 1.91 16 21 C 0.01 0.60 5.47 84.66 0.46 1.06 16 22 N -0.94 -60.14 13.96 21.45 0.30 -59.84 16 23 Si 0.95 44.95 27.47 68.60 1.88 46.84 16 24 H -0.28 -13.32 7.11 99.48 0.71 -12.61 16 25 H -0.27 -12.39 7.11 99.48 0.71 -11.68 16 26 H -0.24 -10.10 6.54 99.48 0.65 -9.45 16 27 C 0.06 1.27 5.49 86.41 0.47 1.74 16 28 C -0.07 -1.32 4.33 30.76 0.13 -1.19 16 29 H 0.13 0.50 8.14 -2.38 -0.02 0.48 16 30 H 0.06 0.64 8.13 -2.39 -0.02 0.62 16 31 H 0.06 0.65 8.13 -2.39 -0.02 0.63 16 32 H 0.09 1.27 8.14 -2.39 -0.02 1.25 16 33 H 0.13 1.04 8.14 -2.38 -0.02 1.02 16 34 H 0.10 0.80 8.08 -2.39 -0.02 0.78 16 35 H 0.08 1.07 8.14 -2.39 -0.02 1.05 16 36 H 0.09 1.47 6.07 -2.39 -0.01 1.46 16 37 H 0.03 0.59 8.12 -2.39 -0.02 0.57 16 38 H 0.07 2.08 7.90 -2.39 -0.02 2.06 16 39 H 0.02 0.58 8.08 -2.39 -0.02 0.56 16 40 H 0.11 2.51 5.61 -2.38 -0.01 2.50 16 41 H 0.12 2.68 8.11 -2.39 -0.02 2.66 16 42 H 0.08 1.70 8.14 -2.39 -0.02 1.68 16 43 H 0.06 1.94 8.07 -2.39 -0.02 1.92 16 44 H 0.09 1.95 6.44 -2.39 -0.02 1.94 16 45 H 0.05 2.26 7.13 -2.39 -0.02 2.24 16 46 H 0.02 0.88 6.85 -2.39 -0.02 0.86 16 47 H 0.27 15.85 8.31 -92.71 -0.77 15.08 16 48 H 0.07 1.60 7.95 -2.39 -0.02 1.58 16 49 H 0.03 0.66 8.12 -2.39 -0.02 0.64 16 50 H 0.06 1.41 8.12 -2.39 -0.02 1.39 16 51 H 0.08 1.73 5.99 -2.39 -0.01 1.72 16 Total: -1.00 -81.98 403.75 2.86 -79.12 By element: Atomic # 1 Polarization: 13.26 SS G_CDS: 0.85 Total: 14.11 kcal Atomic # 6 Polarization: 4.60 SS G_CDS: 6.67 Total: 11.26 kcal Atomic # 7 Polarization: -96.69 SS G_CDS: -6.24 Total: -102.93 kcal Atomic # 8 Polarization: -48.10 SS G_CDS: -0.31 Total: -48.41 kcal Atomic # 14 Polarization: 44.95 SS G_CDS: 1.88 Total: 46.84 kcal Total: -81.98 2.86 -79.12 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000357012425.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.552 kcal (2) G-P(sol) polarization free energy of solvation -81.983 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.535 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.858 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.124 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.677 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds