Wall clock time and date at job start Tue Mar 31 2020 21:19:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.46491 * 120.00453 * 2 1 4 4 C 1.50702 * 109.46957 * 90.00133 * 3 2 1 5 5 H 1.08002 * 120.00299 * 0.02562 * 4 3 2 6 6 C 1.37884 * 119.99942 * 179.72213 * 4 3 2 7 7 N 1.31514 * 119.99698 * 0.28408 * 6 4 3 8 8 Si 1.86794 * 119.99837 * 180.27476 * 6 4 3 9 9 H 1.48501 * 109.47188 * 90.00793 * 8 6 4 10 10 H 1.48501 * 109.47085 * 210.00372 * 8 6 4 11 11 H 1.48498 * 109.47634 * 330.00608 * 8 6 4 12 12 C 1.34780 * 119.99526 * 180.02562 * 2 1 3 13 13 O 1.21285 * 119.99673 * 179.97438 * 12 2 1 14 14 C 1.50700 * 120.00400 * 359.97438 * 12 2 1 15 15 C 1.52994 * 109.47577 * 179.97438 * 14 12 2 16 16 N 1.46902 * 109.47588 * 180.02562 * 15 14 12 17 17 C 1.47016 * 110.99455 * 46.36444 * 16 15 14 18 18 C 1.53097 * 109.25374 * 182.39046 * 17 16 15 19 19 O 1.43010 * 109.26251 * 303.15595 * 18 17 16 20 20 C 1.43017 * 113.73984 * 58.66765 * 19 18 17 21 21 C 1.47013 * 111.00010 * 169.99815 * 16 15 14 22 22 H 1.08989 * 109.51126 * 297.59176 * 21 16 15 23 23 C 1.53008 * 109.50385 * 57.67724 * 21 16 15 24 24 H 1.08997 * 109.96785 * 305.69463 * 23 21 16 25 25 C 1.54279 * 109.98050 * 184.42527 * 23 21 16 26 26 C 1.55048 * 103.71813 * 217.55311 * 25 23 21 27 27 C 1.54889 * 102.35960 * 37.04223 * 26 25 23 28 28 C 1.51448 * 109.98458 * 66.96844 * 23 21 16 29 29 O 1.20755 * 126.33945 * 299.01105 * 28 23 21 30 30 H 1.09000 * 109.47583 * 89.99529 * 1 2 3 31 31 H 1.09005 * 109.47610 * 210.00002 * 1 2 3 32 32 H 1.09006 * 109.46979 * 329.99538 * 1 2 3 33 33 H 1.09004 * 109.47166 * 330.00399 * 3 2 1 34 34 H 1.08994 * 109.47507 * 210.00106 * 3 2 1 35 35 H 0.97005 * 119.99651 * 179.97438 * 7 6 4 36 36 H 1.08995 * 109.47359 * 300.00599 * 14 12 2 37 37 H 1.09008 * 109.46888 * 59.99948 * 14 12 2 38 38 H 1.09003 * 109.47003 * 300.00756 * 15 14 12 39 39 H 1.09008 * 109.47042 * 60.00058 * 15 14 12 40 40 H 1.08993 * 109.50977 * 302.32891 * 17 16 15 41 41 H 1.09006 * 109.50538 * 62.46216 * 17 16 15 42 42 H 1.09000 * 109.50460 * 183.21452 * 18 17 16 43 43 H 1.09006 * 109.54028 * 63.11313 * 18 17 16 44 44 H 1.09006 * 109.50513 * 181.39593 * 20 19 18 45 45 H 1.08999 * 109.50263 * 61.26459 * 20 19 18 46 46 H 1.08998 * 110.57032 * 336.09553 * 25 23 21 47 47 H 1.08998 * 110.57043 * 98.96526 * 25 23 21 48 48 H 1.09000 * 110.80131 * 278.83096 * 26 25 23 49 49 H 1.08999 * 111.00993 * 155.34771 * 26 25 23 50 50 H 1.08994 * 110.44254 * 203.65958 * 27 26 25 51 51 H 1.08997 * 110.43930 * 81.13576 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2686 0.0000 4 6 2.4487 1.7036 1.4208 5 1 2.0982 1.0956 2.2418 6 6 3.1316 2.8746 1.6728 7 7 3.5589 3.6147 0.6732 8 14 3.4497 3.4098 3.4340 9 1 4.7439 2.8472 3.8962 10 1 3.5032 4.8924 3.4987 11 1 2.3550 2.9154 4.3071 12 6 2.1388 -1.1673 -0.0005 13 8 3.3516 -1.1673 -0.0010 14 6 1.3852 -2.4724 -0.0005 15 6 2.3793 -3.6354 -0.0018 16 7 1.6448 -4.9076 -0.0024 17 6 0.5608 -4.8894 -0.9953 18 6 -0.2140 -6.2077 -0.9210 19 8 0.6889 -7.2978 -1.1251 20 6 1.7570 -7.3462 -0.1752 21 6 2.5518 -6.0395 -0.2420 22 1 3.0066 -5.9393 -1.2274 23 6 3.6465 -6.0521 0.8269 24 1 4.1490 -5.0853 0.8565 25 6 4.6675 -7.1680 0.5228 26 6 5.0373 -7.7198 1.9238 27 6 3.6850 -7.6487 2.6757 28 6 3.0441 -6.3641 2.1810 29 8 2.2085 -5.7122 2.7598 30 1 -0.3634 0.0001 -1.0276 31 1 -0.3634 -0.8900 0.5138 32 1 -0.3633 0.8900 0.5139 33 1 1.6084 2.0283 -0.5138 34 1 3.1499 1.1383 -0.5138 35 1 4.0390 4.4388 0.8505 36 1 0.7589 -2.5303 0.8896 37 1 0.7582 -2.5299 -0.8903 38 1 3.0054 -3.5772 -0.8922 39 1 3.0067 -3.5781 0.8878 40 1 -0.1127 -4.0590 -0.7838 41 1 0.9831 -4.7712 -1.9933 42 1 -0.9827 -6.2222 -1.6938 43 1 -0.6817 -6.3011 0.0592 44 1 2.4139 -8.1842 -0.4086 45 1 1.3473 -7.4722 0.8270 46 1 4.2121 -7.9477 -0.0878 47 1 5.5475 -6.7574 0.0277 48 1 5.7823 -7.0862 2.4051 49 1 5.3905 -8.7489 1.8577 50 1 3.8500 -7.6018 3.7520 51 1 3.0628 -8.5069 2.4219 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000372459715.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:19:28 Heat of formation + Delta-G solvation = -134.639676 kcal Electronic energy + Delta-G solvation = -30993.192918 eV Core-core repulsion = 26891.703723 eV Total energy + Delta-G solvation = -4101.489195 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.204 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -41.79850 -40.70067 -39.81429 -37.42083 -37.04956 -36.56095 -34.78195 -33.25008 -32.08993 -29.97012 -29.21452 -28.04311 -27.58688 -27.24643 -25.22066 -24.46615 -23.21631 -21.83357 -21.62699 -19.97755 -19.62901 -18.74059 -18.26151 -17.77580 -17.19083 -17.15360 -16.94460 -16.67619 -16.55812 -16.28145 -15.92821 -15.81233 -15.62323 -14.91110 -14.88720 -14.73819 -14.45121 -14.17583 -13.97020 -13.82684 -13.62961 -13.59444 -13.48381 -13.42107 -13.13030 -12.85593 -12.74946 -12.63602 -12.43032 -12.37685 -12.23178 -12.07858 -12.03880 -11.73484 -11.73227 -11.66837 -11.33958 -10.68720 -10.66936 -10.64460 -10.29607 -9.46602 -9.38301 -8.26273 -6.41297 1.04235 1.33299 1.36388 1.46337 1.77326 2.21158 2.36936 2.71447 2.84615 3.03036 3.20172 3.47333 3.61647 3.70395 3.85203 3.87174 3.92663 3.99336 4.07154 4.13857 4.20286 4.30004 4.31238 4.37274 4.42505 4.46600 4.54184 4.65150 4.66791 4.67711 4.75175 4.79314 4.85069 4.89859 4.92872 4.93775 4.97618 4.99637 5.04370 5.18201 5.19046 5.19941 5.37333 5.52156 5.80090 5.84094 5.93001 6.02414 6.10678 6.64955 6.65227 6.74091 7.23942 7.42767 8.80855 Molecular weight = 338.20amu Principal moments of inertia in cm(-1) A = 0.013524 B = 0.002929 C = 0.002592 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2069.904525 B = 9556.010594 C =10798.875538 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.078 3.922 2 N -0.610 5.610 3 C 0.259 3.741 4 C -0.546 4.546 5 H 0.050 0.950 6 C 0.008 3.992 7 N -0.927 5.927 8 Si 0.967 3.033 9 H -0.280 1.280 10 H -0.271 1.271 11 H -0.263 1.263 12 C 0.495 3.505 13 O -0.600 6.600 14 C -0.121 4.121 15 C 0.088 3.912 16 N -0.534 5.534 17 C 0.007 3.993 18 C 0.064 3.936 19 O -0.394 6.394 20 C 0.070 3.930 21 C 0.064 3.936 22 H 0.059 0.941 23 C -0.155 4.155 24 H 0.083 0.917 25 C -0.112 4.112 26 C -0.113 4.113 27 C -0.180 4.180 28 C 0.366 3.634 29 O -0.466 6.466 30 H 0.074 0.926 31 H 0.092 0.908 32 H 0.065 0.935 33 H 0.025 0.975 34 H -0.003 1.003 35 H 0.268 0.732 36 H 0.109 0.891 37 H 0.121 0.879 38 H 0.029 0.971 39 H 0.056 0.944 40 H 0.105 0.895 41 H 0.043 0.957 42 H 0.122 0.878 43 H 0.057 0.943 44 H 0.129 0.871 45 H 0.049 0.951 46 H 0.098 0.902 47 H 0.082 0.918 48 H 0.068 0.932 49 H 0.108 0.892 50 H 0.092 0.908 51 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.670 -28.245 -2.544 28.920 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 N -0.342 5.342 3 C 0.138 3.862 4 C -0.584 4.584 5 H 0.069 0.931 6 C -0.191 4.191 7 N -0.567 5.567 8 Si 0.791 3.209 9 H -0.206 1.206 10 H -0.196 1.196 11 H -0.187 1.187 12 C 0.284 3.716 13 O -0.482 6.482 14 C -0.161 4.161 15 C -0.040 4.040 16 N -0.259 5.259 17 C -0.121 4.121 18 C -0.013 4.013 19 O -0.313 6.313 20 C -0.007 4.007 21 C -0.045 4.045 22 H 0.077 0.923 23 C -0.175 4.175 24 H 0.101 0.899 25 C -0.150 4.150 26 C -0.150 4.150 27 C -0.217 4.217 28 C 0.242 3.758 29 O -0.339 6.339 30 H 0.093 0.907 31 H 0.110 0.890 32 H 0.084 0.916 33 H 0.043 0.957 34 H 0.015 0.985 35 H 0.077 0.923 36 H 0.127 0.873 37 H 0.139 0.861 38 H 0.047 0.953 39 H 0.075 0.925 40 H 0.123 0.877 41 H 0.061 0.939 42 H 0.140 0.860 43 H 0.075 0.925 44 H 0.147 0.853 45 H 0.067 0.933 46 H 0.117 0.883 47 H 0.100 0.900 48 H 0.087 0.913 49 H 0.126 0.874 50 H 0.110 0.890 51 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -5.685 -27.898 -1.979 28.540 hybrid contribution 0.981 1.633 0.215 1.917 sum -4.705 -26.265 -1.764 26.741 Atomic orbital electron populations 1.21950 0.77768 1.03985 1.02729 1.48193 1.08508 1.06374 1.71080 1.18750 0.91096 0.80413 0.95969 1.21710 1.36883 1.06767 0.93052 0.93145 1.25861 0.94824 0.96346 1.02063 1.70047 1.38700 1.14941 1.33012 0.85425 0.78628 0.77700 0.79133 1.20643 1.19583 1.18745 1.21275 0.87792 0.86639 0.75905 1.90625 1.16652 1.88245 1.52642 1.21699 0.99029 0.89364 1.06021 1.21557 0.94683 0.87522 1.00231 1.62305 1.12141 1.01938 1.49529 1.23052 0.94682 1.00701 0.93661 1.22822 0.91659 0.83969 1.02857 1.87961 1.39557 1.49480 1.54277 1.22911 0.88742 0.96226 0.92777 1.22240 0.92545 0.92521 0.97180 0.92294 1.22553 0.97345 1.02449 0.95126 0.89873 1.22462 0.97662 0.96350 0.98480 1.22448 0.94938 1.03544 0.94077 1.22994 0.99064 0.97135 1.02533 1.25315 0.77882 0.85982 0.86663 1.90427 1.27648 1.54140 1.61708 0.90743 0.88984 0.91584 0.95680 0.98467 0.92300 0.87254 0.86112 0.95307 0.92535 0.87675 0.93883 0.85974 0.92507 0.85337 0.93273 0.88340 0.89953 0.91278 0.87368 0.88971 0.85743 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 2.38 10.24 127.77 1.31 3.69 16 2 N -0.61 -26.90 2.86 -851.14 -2.43 -29.33 16 3 C 0.26 14.47 5.16 85.64 0.44 14.91 16 4 C -0.55 -32.61 9.39 25.60 0.24 -32.37 16 5 H 0.05 3.01 7.81 -2.91 -0.02 2.99 16 6 C 0.01 0.48 5.46 84.66 0.46 0.94 16 7 N -0.93 -57.24 13.29 21.45 0.28 -56.95 16 8 Si 0.97 46.19 29.54 68.60 2.03 48.22 16 9 H -0.28 -13.39 7.11 99.48 0.71 -12.68 16 10 H -0.27 -12.24 7.11 99.48 0.71 -11.53 16 11 H -0.26 -12.03 7.11 99.48 0.71 -11.32 16 12 C 0.50 21.50 7.67 87.66 0.67 22.17 16 13 O -0.60 -32.30 15.56 -3.05 -0.05 -32.35 16 14 C -0.12 -3.63 3.52 29.85 0.11 -3.53 16 15 C 0.09 2.68 3.79 86.30 0.33 3.01 16 16 N -0.53 -12.92 4.13 -870.00 -3.59 -16.51 16 17 C 0.01 0.13 4.94 86.31 0.43 0.55 16 18 C 0.06 1.05 7.01 72.01 0.50 1.56 16 19 O -0.39 -7.52 10.83 -148.98 -1.61 -9.14 16 20 C 0.07 1.16 5.77 72.01 0.42 1.58 16 21 C 0.06 1.29 1.71 44.93 0.08 1.37 16 22 H 0.06 1.21 8.14 -2.39 -0.02 1.19 16 23 C -0.16 -3.04 2.41 -10.87 -0.03 -3.07 16 24 H 0.08 2.11 6.33 -2.39 -0.02 2.10 16 25 C -0.11 -1.24 6.24 31.73 0.20 -1.04 16 26 C -0.11 -1.02 6.95 31.94 0.22 -0.80 16 27 C -0.18 -2.26 6.72 30.86 0.21 -2.05 16 28 C 0.37 8.07 5.48 29.71 0.16 8.24 16 29 O -0.47 -14.63 17.56 -1.44 -0.03 -14.66 16 30 H 0.07 1.84 8.14 -2.39 -0.02 1.82 16 31 H 0.09 2.20 6.44 -2.38 -0.02 2.18 16 32 H 0.07 2.14 8.07 -2.38 -0.02 2.12 16 33 H 0.03 1.41 8.07 -2.38 -0.02 1.39 16 34 H 0.00 -0.18 7.42 -2.39 -0.02 -0.20 16 35 H 0.27 15.44 8.31 -92.70 -0.77 14.67 16 36 H 0.11 3.07 7.40 -2.39 -0.02 3.05 16 37 H 0.12 2.77 6.24 -2.38 -0.01 2.76 16 38 H 0.03 0.94 8.04 -2.39 -0.02 0.92 16 39 H 0.06 2.06 6.70 -2.38 -0.02 2.04 16 40 H 0.11 1.74 6.05 -2.39 -0.01 1.73 16 41 H 0.04 0.84 8.14 -2.38 -0.02 0.82 16 42 H 0.12 1.42 8.14 -2.39 -0.02 1.40 16 43 H 0.06 0.99 8.14 -2.38 -0.02 0.97 16 44 H 0.13 1.35 6.44 -2.38 -0.02 1.33 16 45 H 0.05 0.90 6.93 -2.39 -0.02 0.88 16 46 H 0.10 0.69 6.09 -2.39 -0.01 0.67 16 47 H 0.08 0.91 8.14 -2.39 -0.02 0.89 16 48 H 0.07 0.74 8.14 -2.39 -0.02 0.72 16 49 H 0.11 0.44 8.14 -2.39 -0.02 0.42 16 50 H 0.09 1.17 8.14 -2.39 -0.02 1.15 16 51 H 0.12 1.01 8.14 -2.39 -0.02 0.99 16 Total: -1.00 -83.35 395.30 1.27 -82.09 By element: Atomic # 1 Polarization: 12.56 SS G_CDS: 0.92 Total: 13.48 kcal Atomic # 6 Polarization: 9.41 SS G_CDS: 5.75 Total: 15.16 kcal Atomic # 7 Polarization: -97.06 SS G_CDS: -5.74 Total: -102.80 kcal Atomic # 8 Polarization: -54.46 SS G_CDS: -1.69 Total: -56.15 kcal Atomic # 14 Polarization: 46.19 SS G_CDS: 2.03 Total: 48.22 kcal Total: -83.35 1.27 -82.09 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000372459715.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.554 kcal (2) G-P(sol) polarization free energy of solvation -83.353 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -135.907 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.267 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.086 kcal (6) G-S(sol) free energy of system = (1) + (5) -134.640 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds