Wall clock time and date at job start Tue Mar 31 2020 21:19:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46491 * 1 3 3 C 1.46504 * 120.00254 * 2 1 4 4 C 1.50692 * 109.47312 * 270.00561 * 3 2 1 5 5 H 1.08004 * 119.99972 * 359.97438 * 4 3 2 6 6 C 1.37880 * 120.00094 * 179.97438 * 4 3 2 7 7 N 1.31516 * 119.99799 * 359.97438 * 6 4 3 8 8 Si 1.86802 * 120.00083 * 180.02562 * 6 4 3 9 9 H 1.48497 * 109.47108 * 179.97438 * 8 6 4 10 10 H 1.48503 * 109.46946 * 300.00006 * 8 6 4 11 11 H 1.48503 * 109.47224 * 60.00062 * 8 6 4 12 12 C 1.34783 * 119.99984 * 180.02562 * 2 1 3 13 13 O 1.21283 * 119.99831 * 179.97438 * 12 2 1 14 14 C 1.50694 * 119.99717 * 359.97438 * 12 2 1 15 15 C 1.53005 * 109.47012 * 179.97438 * 14 12 2 16 16 N 1.46894 * 109.47490 * 179.97438 * 15 14 12 17 17 C 1.47018 * 110.99807 * 52.21737 * 16 15 14 18 18 C 1.53092 * 109.26045 * 182.39101 * 17 16 15 19 19 O 1.43013 * 109.26040 * 303.15864 * 18 17 16 20 20 C 1.43020 * 113.74251 * 58.66444 * 19 18 17 21 21 C 1.47013 * 111.00258 * 175.85384 * 16 15 14 22 22 H 1.09002 * 109.50651 * 297.54246 * 21 16 15 23 23 C 1.53002 * 109.50564 * 57.63149 * 21 16 15 24 24 H 1.08995 * 109.97126 * 298.33587 * 23 21 16 25 25 C 1.54283 * 109.98217 * 59.64605 * 23 21 16 26 26 C 1.54988 * 103.74834 * 142.47301 * 25 23 21 27 27 C 1.54894 * 102.33323 * 322.91161 * 26 25 23 28 28 C 1.51442 * 109.98315 * 177.06061 * 23 21 16 29 29 O 1.20766 * 126.33963 * 61.03373 * 28 23 21 30 30 H 1.09002 * 109.47883 * 89.99581 * 1 2 3 31 31 H 1.08998 * 109.47200 * 209.99900 * 1 2 3 32 32 H 1.09001 * 109.47230 * 329.99633 * 1 2 3 33 33 H 1.08994 * 109.47216 * 150.00003 * 3 2 1 34 34 H 1.09003 * 109.46519 * 30.00458 * 3 2 1 35 35 H 0.96992 * 120.00200 * 359.97438 * 7 6 4 36 36 H 1.09000 * 109.47265 * 299.99867 * 14 12 2 37 37 H 1.08998 * 109.47387 * 60.00455 * 14 12 2 38 38 H 1.09000 * 109.47163 * 300.00133 * 15 14 12 39 39 H 1.09010 * 109.46677 * 59.99696 * 15 14 12 40 40 H 1.08996 * 109.50851 * 302.33076 * 17 16 15 41 41 H 1.09000 * 109.50273 * 62.46173 * 17 16 15 42 42 H 1.08995 * 109.50960 * 183.21959 * 18 17 16 43 43 H 1.09007 * 109.54112 * 63.10807 * 18 17 16 44 44 H 1.08997 * 109.50467 * 181.39670 * 20 19 18 45 45 H 1.09004 * 109.53654 * 61.28937 * 20 19 18 46 46 H 1.08996 * 110.57138 * 261.03535 * 25 23 21 47 47 H 1.08998 * 110.56792 * 23.90603 * 25 23 21 48 48 H 1.08994 * 110.83072 * 204.70565 * 26 25 23 49 49 H 1.08994 * 111.00631 * 81.20314 * 26 25 23 50 50 H 1.08999 * 110.44548 * 278.88998 * 27 26 25 51 51 H 1.08997 * 110.54687 * 156.41543 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4486 1.7038 -1.4207 5 1 2.0979 1.0959 -2.2417 6 6 3.1259 2.8781 -1.6726 7 7 3.5525 3.6186 -0.6730 8 14 3.4365 3.4178 -3.4338 9 1 4.1781 4.7044 -3.4338 10 1 4.2392 2.3832 -4.1343 11 1 2.1387 3.5952 -4.1334 12 6 2.1388 -1.1673 -0.0005 13 8 3.3517 -1.1672 -0.0010 14 6 1.3853 -2.4723 -0.0005 15 6 2.3795 -3.6353 -0.0018 16 7 1.6451 -4.9074 -0.0012 17 6 0.6522 -4.9431 -1.0849 18 6 -0.1290 -6.2575 -1.0109 19 8 0.7859 -7.3546 -1.0785 20 6 1.7665 -7.3515 -0.0375 21 6 2.5670 -6.0481 -0.1016 22 1 3.1061 -5.9983 -1.0477 23 6 3.5644 -6.0025 1.0577 24 1 4.1564 -5.0889 1.0038 25 6 2.8121 -6.0657 2.4032 26 6 3.7281 -6.9404 3.2966 27 6 4.2639 -7.9911 2.2925 28 6 4.4739 -7.2123 1.0060 29 8 5.2270 -7.5036 0.1079 30 1 -0.3635 0.0001 -1.0276 31 1 -0.3633 -0.8900 0.5138 32 1 -0.3634 0.8900 0.5139 33 1 3.1499 1.1384 0.5138 34 1 1.6084 2.0283 0.5139 35 1 3.3902 3.3389 0.2415 36 1 0.7590 -2.5302 0.8897 37 1 0.7583 -2.5298 -0.8903 38 1 3.0055 -3.5771 -0.8922 39 1 3.0069 -3.5778 0.8878 40 1 -0.0354 -4.1043 -0.9763 41 1 1.1607 -4.8755 -2.0466 42 1 -0.8269 -6.3137 -1.8463 43 1 -0.6809 -6.3013 -0.0719 44 1 2.4395 -8.1989 -0.1689 45 1 1.2709 -7.4271 0.9304 46 1 2.7027 -5.0680 2.8281 47 1 1.8380 -6.5377 2.2755 48 1 3.1534 -7.4195 4.0891 49 1 4.5446 -6.3513 3.7140 50 1 3.5304 -8.7832 2.1426 51 1 5.2077 -8.4087 2.6430 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000372459716.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:19:33 Heat of formation + Delta-G solvation = -113.769492 kcal Electronic energy + Delta-G solvation = -30826.594184 eV Core-core repulsion = 26726.009989 eV Total energy + Delta-G solvation = -4100.584195 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.204 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -41.04123 -39.45779 -38.95514 -36.79314 -36.02963 -34.97982 -32.95350 -32.42634 -31.05006 -28.59590 -27.90787 -27.19833 -26.74986 -25.58863 -23.77359 -23.38891 -22.15938 -21.63209 -20.22028 -19.03286 -18.63625 -17.38975 -17.00756 -16.86782 -16.19705 -16.04376 -15.82449 -15.75653 -15.38826 -15.31561 -14.90829 -14.60064 -14.40634 -13.88737 -13.75928 -13.70658 -13.69204 -13.10544 -13.06736 -12.69892 -12.55674 -12.37529 -12.25248 -12.01963 -11.94985 -11.87722 -11.57938 -11.48850 -11.27502 -11.09329 -11.04364 -10.94770 -10.86143 -10.69001 -10.59490 -10.11710 -9.88692 -9.68779 -9.16910 -9.05265 -8.61433 -8.41137 -7.67248 -6.41327 -4.13332 1.58604 3.26872 3.30799 3.41119 3.45441 3.49205 3.62670 3.80597 4.01415 4.10523 4.27905 4.49021 4.51842 4.55315 4.64378 4.68778 4.81737 4.89267 4.94704 5.02446 5.04625 5.12503 5.15971 5.17107 5.23077 5.27810 5.34502 5.42548 5.43649 5.46925 5.51792 5.54938 5.62253 5.66498 5.70282 5.80922 5.83903 5.94212 5.96118 6.03581 6.06721 6.67058 6.70971 6.76589 6.82372 7.08159 7.16789 7.34445 8.00656 8.22721 8.39544 8.74665 8.95099 9.56307 10.96181 Molecular weight = 338.20amu Principal moments of inertia in cm(-1) A = 0.014560 B = 0.002658 C = 0.002528 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1922.653206 B =10532.346284 C =11072.561244 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.086 3.914 2 N -0.599 5.599 3 C 0.236 3.764 4 C -0.607 4.607 5 H 0.050 0.950 6 C 0.020 3.980 7 N -0.909 5.909 8 Si 1.071 2.929 9 H -0.281 1.281 10 H -0.288 1.288 11 H -0.288 1.288 12 C 0.505 3.495 13 O -0.544 6.544 14 C -0.138 4.138 15 C 0.069 3.931 16 N -0.527 5.527 17 C 0.009 3.991 18 C 0.063 3.937 19 O -0.383 6.383 20 C 0.066 3.934 21 C 0.065 3.935 22 H 0.059 0.941 23 C -0.149 4.149 24 H 0.111 0.889 25 C -0.106 4.106 26 C -0.124 4.124 27 C -0.183 4.183 28 C 0.371 3.629 29 O -0.439 6.439 30 H 0.050 0.950 31 H 0.058 0.942 32 H 0.066 0.934 33 H 0.033 0.967 34 H 0.021 0.979 35 H 0.267 0.733 36 H 0.095 0.905 37 H 0.088 0.912 38 H 0.045 0.955 39 H 0.088 0.912 40 H 0.095 0.905 41 H 0.046 0.954 42 H 0.099 0.901 43 H 0.061 0.939 44 H 0.090 0.910 45 H 0.069 0.931 46 H 0.080 0.920 47 H 0.082 0.918 48 H 0.079 0.921 49 H 0.074 0.926 50 H 0.104 0.896 51 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.092 -23.778 7.574 26.560 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 N -0.331 5.331 3 C 0.116 3.884 4 C -0.645 4.645 5 H 0.068 0.932 6 C -0.185 4.185 7 N -0.545 5.545 8 Si 0.899 3.101 9 H -0.206 1.206 10 H -0.214 1.214 11 H -0.214 1.214 12 C 0.291 3.709 13 O -0.422 6.422 14 C -0.179 4.179 15 C -0.059 4.059 16 N -0.252 5.252 17 C -0.119 4.119 18 C -0.014 4.014 19 O -0.301 6.301 20 C -0.011 4.011 21 C -0.044 4.044 22 H 0.077 0.923 23 C -0.169 4.169 24 H 0.129 0.871 25 C -0.144 4.144 26 C -0.161 4.161 27 C -0.221 4.221 28 C 0.245 3.755 29 O -0.311 6.311 30 H 0.068 0.932 31 H 0.077 0.923 32 H 0.085 0.915 33 H 0.051 0.949 34 H 0.039 0.961 35 H 0.078 0.922 36 H 0.113 0.887 37 H 0.106 0.894 38 H 0.064 0.936 39 H 0.106 0.894 40 H 0.113 0.887 41 H 0.064 0.936 42 H 0.117 0.883 43 H 0.079 0.921 44 H 0.108 0.892 45 H 0.087 0.913 46 H 0.099 0.901 47 H 0.101 0.899 48 H 0.098 0.902 49 H 0.093 0.907 50 H 0.122 0.878 51 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -7.625 -22.880 6.470 24.970 hybrid contribution -0.406 -0.696 0.285 0.855 sum -8.030 -23.577 6.755 25.806 Atomic orbital electron populations 1.21624 0.81194 1.01709 1.01244 1.47958 1.06198 1.07508 1.71448 1.19351 0.91994 0.78959 0.98128 1.22233 1.40797 1.09581 0.91920 0.93172 1.25819 0.93274 0.93309 1.06060 1.70805 1.44020 1.39582 1.00096 0.83513 0.76449 0.76338 0.73808 1.20594 1.21400 1.21441 1.20263 0.88062 0.85087 0.77465 1.90676 1.13981 1.87305 1.50200 1.21730 0.99322 0.92773 1.04027 1.21907 0.95002 0.86198 1.02778 1.62312 1.15674 1.02161 1.45104 1.22930 0.96065 0.99479 0.93420 1.22711 0.91299 0.84832 1.02508 1.88005 1.43913 1.47203 1.50984 1.22836 0.90666 0.95907 0.91728 1.22071 0.92812 0.92311 0.97183 0.92327 1.22436 0.97226 1.00196 0.97007 0.87071 1.22333 0.98413 1.01359 0.92254 1.22486 0.99788 0.96678 0.97163 1.22926 1.03801 0.99736 0.95625 1.24992 0.78629 0.85661 0.86254 1.90446 1.32410 1.69678 1.38532 0.93172 0.92329 0.91494 0.94883 0.96103 0.92242 0.88654 0.89420 0.93621 0.89386 0.88683 0.93588 0.88340 0.92086 0.89150 0.91332 0.90095 0.89911 0.90205 0.90697 0.87771 0.88997 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.32 10.28 59.84 0.62 1.93 16 2 N -0.60 -12.51 2.86 -182.96 -0.52 -13.03 16 3 C 0.24 6.12 4.51 -5.20 -0.02 6.10 16 4 C -0.61 -17.50 9.39 -34.44 -0.32 -17.82 16 5 H 0.05 1.46 7.81 -52.48 -0.41 1.05 16 6 C 0.02 0.57 5.46 -17.82 -0.10 0.48 16 7 N -0.91 -27.86 13.65 55.43 0.76 -27.10 16 8 Si 1.07 25.78 29.90 -169.99 -5.08 20.69 16 9 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 10 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 11 H -0.29 -6.51 7.11 56.52 0.40 -6.11 16 12 C 0.51 10.16 7.67 -10.99 -0.08 10.08 16 13 O -0.54 -13.44 15.56 5.55 0.09 -13.35 16 14 C -0.14 -1.89 3.76 -27.88 -0.10 -1.99 16 15 C 0.07 0.91 3.84 -3.82 -0.01 0.90 16 16 N -0.53 -5.55 4.25 -226.34 -0.96 -6.51 16 17 C 0.01 0.09 5.13 -3.71 -0.02 0.07 16 18 C 0.06 0.54 7.01 37.21 0.26 0.80 16 19 O -0.38 -4.11 10.83 -35.23 -0.38 -4.49 16 20 C 0.07 0.60 5.75 37.21 0.21 0.82 16 21 C 0.07 0.69 1.83 -67.60 -0.12 0.56 16 22 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 23 C -0.15 -1.42 2.23 -90.73 -0.20 -1.63 16 24 H 0.11 1.24 6.59 -51.93 -0.34 0.90 16 25 C -0.11 -0.76 5.85 -25.01 -0.15 -0.90 16 26 C -0.12 -0.70 6.95 -24.68 -0.17 -0.87 16 27 C -0.18 -1.17 6.72 -26.32 -0.18 -1.35 16 28 C 0.37 3.71 5.89 -28.10 -0.17 3.55 16 29 O -0.44 -6.09 17.99 5.99 0.11 -5.98 16 30 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 31 H 0.06 0.67 6.44 -51.93 -0.33 0.33 16 32 H 0.07 0.99 7.89 -51.93 -0.41 0.58 16 33 H 0.03 0.96 7.29 -51.93 -0.38 0.58 16 34 H 0.02 0.54 7.76 -51.93 -0.40 0.14 16 35 H 0.27 8.11 7.22 -40.82 -0.29 7.82 16 36 H 0.10 1.09 7.40 -51.93 -0.38 0.71 16 37 H 0.09 1.08 6.23 -51.93 -0.32 0.75 16 38 H 0.05 0.72 8.09 -51.93 -0.42 0.30 16 39 H 0.09 1.21 6.51 -51.92 -0.34 0.88 16 40 H 0.10 0.81 6.06 -51.93 -0.31 0.50 16 41 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 42 H 0.10 0.68 8.14 -51.93 -0.42 0.26 16 43 H 0.06 0.46 8.14 -51.92 -0.42 0.03 16 44 H 0.09 0.81 7.30 -51.93 -0.38 0.43 16 45 H 0.07 0.52 6.00 -51.93 -0.31 0.21 16 46 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 47 H 0.08 0.54 5.73 -51.93 -0.30 0.25 16 48 H 0.08 0.33 8.14 -51.93 -0.42 -0.09 16 49 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 50 H 0.10 0.50 8.14 -51.93 -0.42 0.08 16 51 H 0.09 0.55 8.14 -51.93 -0.42 0.13 16 LS Contribution 394.40 15.07 5.94 5.94 Total: -1.00 -36.11 394.40 -8.98 -45.09 By element: Atomic # 1 Polarization: 6.38 SS G_CDS: -8.37 Total: -1.99 kcal Atomic # 6 Polarization: 1.28 SS G_CDS: -0.56 Total: 0.72 kcal Atomic # 7 Polarization: -45.91 SS G_CDS: -0.73 Total: -46.64 kcal Atomic # 8 Polarization: -23.63 SS G_CDS: -0.19 Total: -23.82 kcal Atomic # 14 Polarization: 25.78 SS G_CDS: -5.08 Total: 20.69 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -36.11 -8.98 -45.09 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000372459716.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.679 kcal (2) G-P(sol) polarization free energy of solvation -36.107 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.786 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.983 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.090 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.769 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds