Wall clock time and date at job start Tue Mar 31 2020 21:19:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46491 * 1 3 3 C 1.46504 * 120.00254 * 2 1 4 4 C 1.50692 * 109.47312 * 270.00561 * 3 2 1 5 5 H 1.08004 * 119.99972 * 359.97438 * 4 3 2 6 6 C 1.37880 * 120.00094 * 179.97438 * 4 3 2 7 7 N 1.31516 * 119.99799 * 359.97438 * 6 4 3 8 8 Si 1.86802 * 120.00083 * 180.02562 * 6 4 3 9 9 H 1.48497 * 109.47108 * 179.97438 * 8 6 4 10 10 H 1.48503 * 109.46946 * 300.00006 * 8 6 4 11 11 H 1.48503 * 109.47224 * 60.00062 * 8 6 4 12 12 C 1.34783 * 119.99984 * 180.02562 * 2 1 3 13 13 O 1.21283 * 119.99831 * 179.97438 * 12 2 1 14 14 C 1.50694 * 119.99717 * 359.97438 * 12 2 1 15 15 C 1.53005 * 109.47012 * 179.97438 * 14 12 2 16 16 N 1.46894 * 109.47490 * 179.97438 * 15 14 12 17 17 C 1.47018 * 110.99807 * 52.21737 * 16 15 14 18 18 C 1.53092 * 109.26045 * 182.39101 * 17 16 15 19 19 O 1.43013 * 109.26040 * 303.15864 * 18 17 16 20 20 C 1.43020 * 113.74251 * 58.66444 * 19 18 17 21 21 C 1.47013 * 111.00258 * 175.85384 * 16 15 14 22 22 H 1.09002 * 109.50651 * 297.54246 * 21 16 15 23 23 C 1.53002 * 109.50564 * 57.63149 * 21 16 15 24 24 H 1.08995 * 109.97126 * 298.33587 * 23 21 16 25 25 C 1.54283 * 109.98217 * 59.64605 * 23 21 16 26 26 C 1.54988 * 103.74834 * 142.47301 * 25 23 21 27 27 C 1.54894 * 102.33323 * 322.91161 * 26 25 23 28 28 C 1.51442 * 109.98315 * 177.06061 * 23 21 16 29 29 O 1.20766 * 126.33963 * 61.03373 * 28 23 21 30 30 H 1.09002 * 109.47883 * 89.99581 * 1 2 3 31 31 H 1.08998 * 109.47200 * 209.99900 * 1 2 3 32 32 H 1.09001 * 109.47230 * 329.99633 * 1 2 3 33 33 H 1.08994 * 109.47216 * 150.00003 * 3 2 1 34 34 H 1.09003 * 109.46519 * 30.00458 * 3 2 1 35 35 H 0.96992 * 120.00200 * 359.97438 * 7 6 4 36 36 H 1.09000 * 109.47265 * 299.99867 * 14 12 2 37 37 H 1.08998 * 109.47387 * 60.00455 * 14 12 2 38 38 H 1.09000 * 109.47163 * 300.00133 * 15 14 12 39 39 H 1.09010 * 109.46677 * 59.99696 * 15 14 12 40 40 H 1.08996 * 109.50851 * 302.33076 * 17 16 15 41 41 H 1.09000 * 109.50273 * 62.46173 * 17 16 15 42 42 H 1.08995 * 109.50960 * 183.21959 * 18 17 16 43 43 H 1.09007 * 109.54112 * 63.10807 * 18 17 16 44 44 H 1.08997 * 109.50467 * 181.39670 * 20 19 18 45 45 H 1.09004 * 109.53654 * 61.28937 * 20 19 18 46 46 H 1.08996 * 110.57138 * 261.03535 * 25 23 21 47 47 H 1.08998 * 110.56792 * 23.90603 * 25 23 21 48 48 H 1.08994 * 110.83072 * 204.70565 * 26 25 23 49 49 H 1.08994 * 111.00631 * 81.20314 * 26 25 23 50 50 H 1.08999 * 110.44548 * 278.88998 * 27 26 25 51 51 H 1.08997 * 110.54687 * 156.41543 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4486 1.7038 -1.4207 5 1 2.0979 1.0959 -2.2417 6 6 3.1259 2.8781 -1.6726 7 7 3.5525 3.6186 -0.6730 8 14 3.4365 3.4178 -3.4338 9 1 4.1781 4.7044 -3.4338 10 1 4.2392 2.3832 -4.1343 11 1 2.1387 3.5952 -4.1334 12 6 2.1388 -1.1673 -0.0005 13 8 3.3517 -1.1672 -0.0010 14 6 1.3853 -2.4723 -0.0005 15 6 2.3795 -3.6353 -0.0018 16 7 1.6451 -4.9074 -0.0012 17 6 0.6522 -4.9431 -1.0849 18 6 -0.1290 -6.2575 -1.0109 19 8 0.7859 -7.3546 -1.0785 20 6 1.7665 -7.3515 -0.0375 21 6 2.5670 -6.0481 -0.1016 22 1 3.1061 -5.9983 -1.0477 23 6 3.5644 -6.0025 1.0577 24 1 4.1564 -5.0889 1.0038 25 6 2.8121 -6.0657 2.4032 26 6 3.7281 -6.9404 3.2966 27 6 4.2639 -7.9911 2.2925 28 6 4.4739 -7.2123 1.0060 29 8 5.2270 -7.5036 0.1079 30 1 -0.3635 0.0001 -1.0276 31 1 -0.3633 -0.8900 0.5138 32 1 -0.3634 0.8900 0.5139 33 1 3.1499 1.1384 0.5138 34 1 1.6084 2.0283 0.5139 35 1 3.3902 3.3389 0.2415 36 1 0.7590 -2.5302 0.8897 37 1 0.7583 -2.5298 -0.8903 38 1 3.0055 -3.5771 -0.8922 39 1 3.0069 -3.5778 0.8878 40 1 -0.0354 -4.1043 -0.9763 41 1 1.1607 -4.8755 -2.0466 42 1 -0.8269 -6.3137 -1.8463 43 1 -0.6809 -6.3013 -0.0719 44 1 2.4395 -8.1989 -0.1689 45 1 1.2709 -7.4271 0.9304 46 1 2.7027 -5.0680 2.8281 47 1 1.8380 -6.5377 2.2755 48 1 3.1534 -7.4195 4.0891 49 1 4.5446 -6.3513 3.7140 50 1 3.5304 -8.7832 2.1426 51 1 5.2077 -8.4087 2.6430 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000372459716.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:19:31 Heat of formation + Delta-G solvation = -140.007423 kcal Electronic energy + Delta-G solvation = -30827.731947 eV Core-core repulsion = 26726.009989 eV Total energy + Delta-G solvation = -4101.721958 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.204 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -41.86945 -40.81086 -40.03586 -37.61895 -37.01826 -36.65256 -35.00693 -33.27861 -32.13351 -29.70176 -29.08450 -28.22330 -27.61442 -27.11400 -25.25727 -24.49687 -23.38569 -22.43008 -20.96785 -20.19343 -19.85648 -19.10955 -18.35775 -17.90018 -17.24665 -17.12463 -16.84046 -16.78126 -16.57174 -16.15933 -15.90102 -15.77541 -15.60578 -15.30989 -15.05861 -14.97200 -14.46559 -14.28839 -14.03612 -13.88836 -13.67903 -13.63682 -13.59303 -13.39949 -13.21765 -12.96717 -12.74605 -12.70595 -12.50060 -12.37458 -12.02914 -11.99181 -11.85495 -11.81972 -11.59575 -11.44654 -11.23551 -10.75270 -10.65720 -10.65081 -10.48294 -9.58714 -9.50252 -8.73147 -6.49259 0.77610 1.45653 1.54631 1.71299 1.74592 2.12735 2.49275 2.61076 2.79955 3.05882 3.18244 3.39365 3.54830 3.66785 3.74531 3.81284 3.89753 3.95952 4.00070 4.12543 4.21042 4.27341 4.30017 4.37222 4.40631 4.41242 4.50661 4.58578 4.60875 4.63848 4.68613 4.75800 4.79104 4.85466 4.87920 4.89622 4.92417 4.93520 4.96889 5.00579 5.19368 5.29041 5.43291 5.51333 5.71397 5.78379 5.80617 6.09633 6.11383 6.38411 6.41274 6.63904 7.24516 7.37269 8.61860 Molecular weight = 338.20amu Principal moments of inertia in cm(-1) A = 0.014560 B = 0.002658 C = 0.002528 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1922.653206 B =10532.346284 C =11072.561244 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.079 3.921 2 N -0.607 5.607 3 C 0.245 3.755 4 C -0.619 4.619 5 H 0.043 0.957 6 C -0.032 4.032 7 N -0.931 5.931 8 Si 1.117 2.883 9 H -0.278 1.278 10 H -0.283 1.283 11 H -0.260 1.260 12 C 0.494 3.506 13 O -0.603 6.603 14 C -0.117 4.117 15 C 0.077 3.923 16 N -0.507 5.507 17 C 0.002 3.998 18 C 0.064 3.936 19 O -0.404 6.404 20 C 0.071 3.929 21 C 0.066 3.934 22 H 0.020 0.980 23 C -0.152 4.152 24 H 0.084 0.916 25 C -0.098 4.098 26 C -0.116 4.116 27 C -0.174 4.174 28 C 0.368 3.632 29 O -0.489 6.489 30 H 0.056 0.944 31 H 0.108 0.892 32 H 0.069 0.931 33 H -0.009 1.009 34 H 0.021 0.979 35 H 0.256 0.744 36 H 0.135 0.865 37 H 0.111 0.889 38 H 0.007 0.993 39 H 0.079 0.921 40 H 0.116 0.884 41 H 0.024 0.976 42 H 0.116 0.884 43 H 0.082 0.918 44 H 0.090 0.910 45 H 0.096 0.904 46 H 0.075 0.925 47 H 0.098 0.902 48 H 0.108 0.892 49 H 0.069 0.931 50 H 0.131 0.869 51 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.429 -25.704 8.414 29.765 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 N -0.338 5.338 3 C 0.123 3.877 4 C -0.657 4.657 5 H 0.061 0.939 6 C -0.230 4.230 7 N -0.568 5.568 8 Si 0.938 3.062 9 H -0.203 1.203 10 H -0.209 1.209 11 H -0.184 1.184 12 C 0.283 3.717 13 O -0.485 6.485 14 C -0.157 4.157 15 C -0.051 4.051 16 N -0.232 5.232 17 C -0.125 4.125 18 C -0.012 4.012 19 O -0.322 6.322 20 C -0.006 4.006 21 C -0.044 4.044 22 H 0.038 0.962 23 C -0.172 4.172 24 H 0.102 0.898 25 C -0.135 4.135 26 C -0.153 4.153 27 C -0.211 4.211 28 C 0.245 3.755 29 O -0.364 6.364 30 H 0.075 0.925 31 H 0.127 0.873 32 H 0.088 0.912 33 H 0.009 0.991 34 H 0.039 0.961 35 H 0.065 0.935 36 H 0.153 0.847 37 H 0.129 0.871 38 H 0.025 0.975 39 H 0.097 0.903 40 H 0.134 0.866 41 H 0.042 0.958 42 H 0.134 0.866 43 H 0.100 0.900 44 H 0.108 0.892 45 H 0.114 0.886 46 H 0.094 0.906 47 H 0.117 0.883 48 H 0.126 0.874 49 H 0.088 0.912 50 H 0.149 0.851 51 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -11.042 -24.828 7.340 28.147 hybrid contribution 0.634 -0.104 0.035 0.644 sum -10.407 -24.933 7.374 28.006 Atomic orbital electron populations 1.21970 0.77366 1.04394 1.02509 1.48037 1.08577 1.05919 1.71269 1.18885 0.90989 0.81603 0.96264 1.22547 1.40610 1.09550 0.93008 0.93851 1.27354 0.92618 0.93657 1.09376 1.70923 1.45470 1.40353 1.00023 0.82941 0.77741 0.76066 0.69458 1.20278 1.20875 1.18422 1.21428 0.87778 0.86774 0.75720 1.90649 1.16954 1.88265 1.52620 1.21666 0.98779 0.88390 1.06830 1.21708 0.94837 0.87882 1.00658 1.62384 1.14970 1.00652 1.45205 1.23116 0.95939 1.01527 0.91948 1.22884 0.90847 0.83057 1.04438 1.87985 1.44420 1.48075 1.51750 1.22874 0.90496 0.94519 0.92715 1.22076 0.93074 0.93385 0.95831 0.96224 1.22480 0.97140 0.99094 0.98473 0.89769 1.22321 0.98974 1.01726 0.90522 1.22502 0.99582 0.96043 0.97190 1.22966 1.05024 1.00033 0.93115 1.25596 0.77204 0.85867 0.86844 1.90424 1.34392 1.70896 1.40671 0.92510 0.87339 0.91222 0.99071 0.96113 0.93478 0.84726 0.87059 0.97453 0.90308 0.86592 0.95806 0.86609 0.89960 0.89188 0.88602 0.90583 0.88333 0.87364 0.91183 0.85150 0.88270 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 2.20 10.28 127.77 1.31 3.51 16 2 N -0.61 -25.20 2.86 -851.16 -2.43 -27.64 16 3 C 0.24 13.16 4.51 85.63 0.39 13.55 16 4 C -0.62 -36.47 9.39 25.60 0.24 -36.23 16 5 H 0.04 2.55 7.81 -2.91 -0.02 2.53 16 6 C -0.03 -1.88 5.46 84.66 0.46 -1.42 16 7 N -0.93 -58.52 13.65 21.45 0.29 -58.22 16 8 Si 1.12 51.94 29.90 68.60 2.05 53.99 16 9 H -0.28 -12.71 7.11 99.48 0.71 -12.01 16 10 H -0.28 -12.83 7.11 99.48 0.71 -12.12 16 11 H -0.26 -10.83 7.11 99.48 0.71 -10.13 16 12 C 0.49 20.02 7.67 87.65 0.67 20.69 16 13 O -0.60 -31.44 15.56 -3.04 -0.05 -31.49 16 14 C -0.12 -2.96 3.76 29.85 0.11 -2.85 16 15 C 0.08 2.08 3.84 86.31 0.33 2.42 16 16 N -0.51 -10.07 4.25 -870.00 -3.70 -13.77 16 17 C 0.00 0.04 5.13 86.31 0.44 0.48 16 18 C 0.06 0.88 7.01 72.01 0.50 1.39 16 19 O -0.40 -7.85 10.83 -148.98 -1.61 -9.46 16 20 C 0.07 1.18 5.75 72.01 0.41 1.59 16 21 C 0.07 1.39 1.83 44.93 0.08 1.48 16 22 H 0.02 0.57 8.14 -2.39 -0.02 0.55 16 23 C -0.15 -2.96 2.23 -10.87 -0.02 -2.99 16 24 H 0.08 2.09 6.59 -2.39 -0.02 2.07 16 25 C -0.10 -1.19 5.85 31.71 0.19 -1.00 16 26 C -0.12 -0.98 6.95 31.92 0.22 -0.76 16 27 C -0.17 -1.85 6.72 30.86 0.21 -1.64 16 28 C 0.37 7.49 5.89 29.70 0.17 7.67 16 29 O -0.49 -14.46 17.99 -1.47 -0.03 -14.48 16 30 H 0.06 1.52 8.14 -2.39 -0.02 1.50 16 31 H 0.11 1.92 6.44 -2.39 -0.02 1.90 16 32 H 0.07 1.90 7.89 -2.39 -0.02 1.88 16 33 H -0.01 -0.54 7.29 -2.39 -0.02 -0.56 16 34 H 0.02 1.11 7.76 -2.39 -0.02 1.09 16 35 H 0.26 16.20 7.22 -92.71 -0.67 15.53 16 36 H 0.13 2.44 7.40 -2.39 -0.02 2.42 16 37 H 0.11 2.36 6.23 -2.39 -0.01 2.35 16 38 H 0.01 0.25 8.09 -2.39 -0.02 0.23 16 39 H 0.08 2.27 6.51 -2.38 -0.02 2.25 16 40 H 0.12 1.51 6.06 -2.39 -0.01 1.50 16 41 H 0.02 0.52 8.14 -2.39 -0.02 0.50 16 42 H 0.12 1.20 8.14 -2.39 -0.02 1.19 16 43 H 0.08 0.83 8.14 -2.38 -0.02 0.81 16 44 H 0.09 1.50 7.30 -2.39 -0.02 1.48 16 45 H 0.10 1.08 6.00 -2.39 -0.01 1.07 16 46 H 0.08 1.04 8.14 -2.39 -0.02 1.02 16 47 H 0.10 0.89 5.73 -2.39 -0.01 0.88 16 48 H 0.11 0.40 8.14 -2.39 -0.02 0.38 16 49 H 0.07 0.69 8.14 -2.39 -0.02 0.67 16 50 H 0.13 0.78 8.14 -2.39 -0.02 0.76 16 51 H 0.10 0.98 8.14 -2.39 -0.02 0.96 16 Total: -1.00 -85.73 394.40 1.28 -84.45 By element: Atomic # 1 Polarization: 9.70 SS G_CDS: 1.02 Total: 10.72 kcal Atomic # 6 Polarization: 0.17 SS G_CDS: 5.73 Total: 5.90 kcal Atomic # 7 Polarization: -93.79 SS G_CDS: -5.84 Total: -99.63 kcal Atomic # 8 Polarization: -53.75 SS G_CDS: -1.69 Total: -55.43 kcal Atomic # 14 Polarization: 51.94 SS G_CDS: 2.05 Total: 53.99 kcal Total: -85.73 1.28 -84.45 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000372459716.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.554 kcal (2) G-P(sol) polarization free energy of solvation -85.732 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -141.286 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.279 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.454 kcal (6) G-S(sol) free energy of system = (1) + (5) -140.007 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds