Wall clock time and date at job start Tue Mar 31 2020 20:38:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.45196 * 109.47576 * 2 1 4 4 C 1.34224 * 117.00713 * 179.97438 * 3 2 1 5 5 O 1.20832 * 119.99738 * 359.97438 * 4 3 2 6 6 C 1.50695 * 120.00573 * 179.97438 * 4 3 2 7 7 C 1.53000 * 109.47275 * 179.97438 * 6 4 3 8 8 C 1.53039 * 109.45820 * 175.00205 * 7 6 4 9 9 C 1.53194 * 109.31218 * 181.38696 * 8 7 6 10 10 N 1.46927 * 108.77615 * 305.36600 * 9 8 7 11 11 C 1.34779 * 120.62966 * 233.58737 * 10 9 8 12 12 O 1.21587 * 119.99753 * 354.92960 * 11 10 9 13 13 N 1.34772 * 119.99718 * 174.93365 * 11 10 9 14 14 C 1.46505 * 119.99855 * 185.02528 * 13 11 10 15 15 C 1.52997 * 109.47084 * 185.00915 * 14 13 11 16 16 C 1.50703 * 115.54846 * 275.57191 * 15 14 13 17 17 H 1.08001 * 120.00046 * 114.79809 * 16 15 14 18 18 C 1.37880 * 119.99936 * 294.79176 * 16 15 14 19 19 N 1.31514 * 120.00012 * 352.06984 * 18 16 15 20 20 Si 1.86794 * 119.99842 * 172.06663 * 18 16 15 21 21 H 1.48501 * 109.47441 * 60.00153 * 20 18 16 22 22 H 1.48505 * 109.47213 * 180.02562 * 20 18 16 23 23 H 1.48505 * 109.47335 * 300.00057 * 20 18 16 24 24 C 1.53003 * 117.49998 * 129.86847 * 15 14 13 25 25 C 1.52994 * 117.50220 * 61.24592 * 15 14 13 26 26 C 1.46926 * 118.73969 * 53.85627 * 10 9 8 27 27 C 1.53040 * 109.45940 * 295.06908 * 7 6 4 28 28 H 1.09009 * 109.46715 * 60.00139 * 1 2 3 29 29 H 1.09003 * 109.47110 * 179.97438 * 1 2 3 30 30 H 1.08998 * 109.47507 * 300.00860 * 1 2 3 31 31 H 1.08998 * 109.47507 * 239.99140 * 2 1 3 32 32 H 1.09009 * 109.46715 * 119.99861 * 2 1 3 33 33 H 1.09010 * 109.46887 * 59.99982 * 6 4 3 34 34 H 1.08993 * 109.47441 * 300.00308 * 6 4 3 35 35 H 1.08993 * 109.45818 * 55.02855 * 7 6 4 36 36 H 1.09001 * 109.49922 * 61.43268 * 8 7 6 37 37 H 1.09003 * 109.52569 * 301.35202 * 8 7 6 38 38 H 1.08996 * 109.58666 * 185.57697 * 9 8 7 39 39 H 1.08999 * 109.70414 * 65.22323 * 9 8 7 40 40 H 0.97002 * 120.00388 * 5.02743 * 13 11 10 41 41 H 1.09005 * 109.47002 * 305.01105 * 14 13 11 42 42 H 1.08996 * 109.46975 * 65.00432 * 14 13 11 43 43 H 0.97003 * 119.99721 * 185.00083 * 19 18 16 44 44 H 1.09000 * 117.49407 * 359.97438 * 24 15 14 45 45 H 1.08999 * 117.50286 * 145.01905 * 24 15 14 46 46 H 1.09003 * 117.50192 * 214.98195 * 25 15 14 47 47 H 1.09004 * 117.49779 * 359.97169 * 25 15 14 48 48 H 1.09002 * 109.58439 * 65.93114 * 26 10 9 49 49 H 1.08998 * 109.58820 * 186.35679 * 26 10 9 50 50 H 1.09001 * 109.49637 * 298.56238 * 27 7 6 51 51 H 1.09000 * 109.49727 * 58.63430 * 27 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0141 1.3689 0.0000 4 6 3.3447 1.5448 0.0005 5 8 4.0808 0.5866 0.0015 6 6 3.9208 2.9373 0.0000 7 6 5.4487 2.8572 0.0014 8 6 6.0332 4.2659 -0.1249 9 6 7.5623 4.1789 -0.1580 10 7 8.0197 3.4398 1.0266 11 6 8.9422 3.9707 1.8534 12 8 9.4717 5.0290 1.5740 13 7 9.2778 3.3284 2.9897 14 6 10.1973 3.9564 3.9419 15 6 10.5075 2.9753 5.0741 16 6 9.5074 2.9461 6.2011 17 1 8.9238 2.0556 6.3822 18 6 9.3375 4.0563 7.0009 19 7 10.1519 5.0822 6.8835 20 14 7.9504 4.1031 8.2512 21 1 8.1165 2.9873 9.2169 22 1 7.9834 5.3972 8.9789 23 1 6.6482 3.9624 7.5514 24 6 11.9784 2.7474 5.4283 25 6 11.1892 1.6576 4.7002 26 6 7.4567 2.1083 1.2895 27 6 5.9247 2.2209 1.3094 28 1 -0.3633 0.5139 -0.8901 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5139 0.8899 31 1 1.8934 -0.5139 -0.8899 32 1 1.8933 -0.5139 0.8901 33 1 3.5844 3.4700 0.8896 34 1 3.5853 3.4690 -0.8904 35 1 5.7812 2.2493 -0.8399 36 1 5.7214 4.8671 0.7292 37 1 5.6751 4.7278 -1.0450 38 1 7.9857 5.1832 -0.1480 39 1 7.8813 3.6569 -1.0601 40 1 8.9106 2.4504 3.1772 41 1 11.1217 4.2255 3.4307 42 1 9.7361 4.8536 4.3546 43 1 10.0783 5.8322 7.4942 44 1 12.7251 3.2962 4.8544 45 1 12.2231 2.5764 6.4767 46 1 10.9145 0.7696 5.2695 47 1 11.4162 1.4894 3.6475 48 1 7.7650 1.4195 0.5030 49 1 7.8104 1.7461 2.2547 50 1 5.6139 2.8414 2.1499 51 1 5.4889 1.2269 1.4101 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000431105839.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:38:42 Heat of formation + Delta-G solvation = -100.367335 kcal Electronic energy + Delta-G solvation = -30083.467525 eV Core-core repulsion = 25983.464491 eV Total energy + Delta-G solvation = -4100.003034 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.204 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -40.91989 -39.90852 -37.92816 -36.88924 -36.42917 -33.91568 -33.18803 -32.11168 -32.02687 -30.89861 -29.20737 -26.31193 -25.25072 -24.31385 -23.31326 -23.03951 -21.41691 -21.13128 -20.39557 -19.34350 -19.07012 -17.96055 -17.72960 -16.98667 -16.53988 -16.11831 -15.61092 -15.22660 -14.93937 -14.63050 -14.40502 -14.22604 -14.11764 -13.81180 -13.59921 -13.40210 -13.32866 -13.16368 -12.87788 -12.55661 -12.39870 -12.09164 -12.03732 -11.95076 -11.64286 -11.51279 -11.30418 -11.14756 -10.97962 -10.94719 -10.90072 -10.84019 -10.61398 -10.52445 -10.28092 -10.26790 -9.65886 -9.39619 -9.02490 -8.57300 -8.48148 -8.19430 -7.89193 -6.06320 -4.12925 1.95516 2.36508 3.12169 3.28030 3.34255 3.35428 3.78586 4.30633 4.36337 4.42960 4.46948 4.53066 4.58131 4.59967 4.84269 4.87871 5.03454 5.12342 5.17665 5.22136 5.27960 5.30310 5.36422 5.37058 5.40662 5.51087 5.56098 5.66206 5.80232 5.83566 5.90991 5.98956 6.01961 6.05069 6.22764 6.30855 6.34504 6.50771 6.65406 6.71465 6.76608 6.95459 7.07597 7.35368 7.40054 7.50043 7.54334 7.58441 7.85998 8.37017 8.62202 8.86394 9.22926 9.51598 11.01411 Molecular weight = 338.20amu Principal moments of inertia in cm(-1) A = 0.011072 B = 0.002768 C = 0.002456 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2528.399272 B =10112.586945 C =11399.186383 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.061 3.939 3 O -0.362 6.362 4 C 0.461 3.539 5 O -0.502 6.502 6 C -0.110 4.110 7 C -0.074 4.074 8 C -0.129 4.129 9 C 0.133 3.867 10 N -0.636 5.636 11 C 0.702 3.298 12 O -0.601 6.601 13 N -0.726 5.726 14 C 0.180 3.820 15 C 0.035 3.965 16 C -0.500 4.500 17 H 0.060 0.940 18 C 0.073 3.927 19 N -0.874 5.874 20 Si 0.891 3.109 21 H -0.277 1.277 22 H -0.287 1.287 23 H -0.276 1.276 24 C -0.164 4.164 25 C -0.209 4.209 26 C 0.116 3.884 27 C -0.137 4.137 28 H 0.066 0.934 29 H 0.079 0.921 30 H 0.067 0.933 31 H 0.069 0.931 32 H 0.070 0.930 33 H 0.107 0.893 34 H 0.106 0.894 35 H 0.082 0.918 36 H 0.071 0.929 37 H 0.075 0.925 38 H 0.094 0.906 39 H 0.059 0.941 40 H 0.393 0.607 41 H 0.039 0.961 42 H 0.077 0.923 43 H 0.263 0.737 44 H 0.065 0.935 45 H 0.081 0.919 46 H 0.077 0.923 47 H 0.067 0.933 48 H 0.066 0.934 49 H 0.082 0.918 50 H 0.067 0.933 51 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.510 -7.345 -16.125 24.218 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.013 4.013 3 O -0.280 6.280 4 C 0.304 3.696 5 O -0.390 6.390 6 C -0.148 4.148 7 C -0.093 4.093 8 C -0.168 4.168 9 C 0.010 3.990 10 N -0.375 5.375 11 C 0.403 3.597 12 O -0.481 6.481 13 N -0.381 5.381 14 C 0.057 3.943 15 C 0.034 3.966 16 C -0.537 4.537 17 H 0.078 0.922 18 C -0.131 4.131 19 N -0.510 5.510 20 Si 0.719 3.281 21 H -0.203 1.203 22 H -0.212 1.212 23 H -0.202 1.202 24 C -0.203 4.203 25 C -0.246 4.246 26 C -0.008 4.008 27 C -0.175 4.175 28 H 0.085 0.915 29 H 0.098 0.902 30 H 0.086 0.914 31 H 0.087 0.913 32 H 0.089 0.911 33 H 0.125 0.875 34 H 0.124 0.876 35 H 0.100 0.900 36 H 0.090 0.910 37 H 0.093 0.907 38 H 0.112 0.888 39 H 0.077 0.923 40 H 0.229 0.771 41 H 0.057 0.943 42 H 0.095 0.905 43 H 0.073 0.927 44 H 0.084 0.916 45 H 0.100 0.900 46 H 0.095 0.905 47 H 0.085 0.915 48 H 0.084 0.916 49 H 0.100 0.900 50 H 0.086 0.914 51 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -15.897 -6.634 -16.234 23.670 hybrid contribution -0.916 -0.600 0.918 1.428 sum -16.813 -7.234 -15.316 23.866 Atomic orbital electron populations 1.21813 0.92656 1.03008 1.03536 1.23022 0.95356 0.80227 1.02669 1.86511 1.24899 1.32458 1.84089 1.23861 0.80378 0.93105 0.72218 1.90656 1.60121 1.43280 1.44904 1.21548 0.96568 0.90713 1.05960 1.20996 0.91182 0.97384 0.99712 1.22004 0.96112 0.95913 1.02764 1.21298 0.92804 0.98316 0.86622 1.47279 1.43901 1.18869 1.27498 1.15958 0.79775 0.83610 0.80319 1.90856 1.57388 1.23840 1.75970 1.45494 1.50677 1.22058 1.19884 1.20887 0.90400 0.96532 0.86464 1.19074 0.92037 0.90982 0.94480 1.20382 1.20921 0.98961 1.13476 0.92228 1.24981 0.95832 0.95328 0.96996 1.69959 1.36328 1.07860 1.36807 0.86685 0.82933 0.77271 0.81259 1.20288 1.21235 1.20193 1.22706 0.96422 1.01900 0.99229 1.22877 1.09195 0.94186 0.98332 1.21625 0.93159 0.84294 1.01679 1.22206 0.95869 1.02485 0.96989 0.91526 0.90227 0.91405 0.91261 0.91117 0.87486 0.87582 0.90000 0.91009 0.90679 0.88812 0.92253 0.77133 0.94310 0.90503 0.92714 0.91621 0.89995 0.90450 0.91482 0.91621 0.89987 0.91386 0.89468 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.78 10.29 37.16 0.38 -0.40 16 2 C 0.06 0.46 6.19 37.16 0.23 0.69 16 3 O -0.36 -3.34 10.22 -39.24 -0.40 -3.75 16 4 C 0.46 4.53 7.67 36.00 0.28 4.81 16 5 O -0.50 -6.17 13.72 -18.76 -0.26 -6.43 16 6 C -0.11 -0.84 5.29 -27.89 -0.15 -0.99 16 7 C -0.07 -0.69 1.80 -90.58 -0.16 -0.85 16 8 C -0.13 -1.23 5.36 -26.61 -0.14 -1.38 16 9 C 0.13 1.67 6.42 -3.71 -0.02 1.65 16 10 N -0.64 -9.73 2.97 -178.23 -0.53 -10.26 16 11 C 0.70 14.08 8.29 -86.92 -0.72 13.36 16 12 O -0.60 -14.27 15.76 5.29 0.08 -14.18 16 13 N -0.73 -14.82 5.37 -65.22 -0.35 -15.17 16 14 C 0.18 4.31 5.53 -4.04 -0.02 4.29 16 15 C 0.04 0.84 1.32 -155.66 -0.21 0.64 16 16 C -0.50 -13.11 8.82 -34.44 -0.30 -13.42 16 17 H 0.06 1.54 7.83 -52.49 -0.41 1.13 16 18 C 0.07 1.96 5.22 -17.82 -0.09 1.86 16 19 N -0.87 -24.55 12.60 55.43 0.70 -23.85 16 20 Si 0.89 20.78 29.55 -169.99 -5.02 15.76 16 21 H -0.28 -6.39 7.11 56.52 0.40 -5.98 16 22 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 23 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 24 C -0.16 -3.77 9.88 -26.73 -0.26 -4.04 16 25 C -0.21 -4.35 9.78 -26.74 -0.26 -4.61 16 26 C 0.12 1.48 6.46 -3.48 -0.02 1.46 16 27 C -0.14 -1.55 5.13 -26.38 -0.14 -1.69 16 28 H 0.07 0.32 8.14 -51.92 -0.42 -0.10 16 29 H 0.08 0.28 8.14 -51.93 -0.42 -0.14 16 30 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 31 H 0.07 0.50 8.13 -51.93 -0.42 0.08 16 32 H 0.07 0.55 8.13 -51.92 -0.42 0.12 16 33 H 0.11 0.75 8.14 -51.92 -0.42 0.33 16 34 H 0.11 0.58 8.14 -51.93 -0.42 0.16 16 35 H 0.08 0.79 7.95 -51.93 -0.41 0.37 16 36 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 37 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 38 H 0.09 1.35 7.03 -51.93 -0.37 0.99 16 39 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 40 H 0.39 7.26 5.87 -40.82 -0.24 7.02 16 41 H 0.04 0.95 7.87 -51.93 -0.41 0.54 16 42 H 0.08 2.11 7.26 -51.93 -0.38 1.73 16 43 H 0.26 7.12 8.32 -40.82 -0.34 6.78 16 44 H 0.07 1.45 8.06 -51.93 -0.42 1.03 16 45 H 0.08 1.95 8.14 -51.93 -0.42 1.53 16 46 H 0.08 1.57 8.14 -51.93 -0.42 1.14 16 47 H 0.07 1.29 8.14 -51.93 -0.42 0.87 16 48 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 49 H 0.08 1.09 5.56 -51.93 -0.29 0.80 16 50 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 51 H 0.09 1.03 5.93 -51.93 -0.31 0.72 16 LS Contribution 408.75 15.07 6.16 6.16 Total: -1.00 -32.22 408.75 -9.94 -42.17 By element: Atomic # 1 Polarization: 16.88 SS G_CDS: -8.71 Total: 8.17 kcal Atomic # 6 Polarization: 3.00 SS G_CDS: -1.62 Total: 1.38 kcal Atomic # 7 Polarization: -49.10 SS G_CDS: -0.18 Total: -49.28 kcal Atomic # 8 Polarization: -23.78 SS G_CDS: -0.57 Total: -24.36 kcal Atomic # 14 Polarization: 20.78 SS G_CDS: -5.02 Total: 15.76 kcal Total LS contribution 6.16 Total: 6.16 kcal Total: -32.22 -9.94 -42.17 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000431105839.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.201 kcal (2) G-P(sol) polarization free energy of solvation -32.225 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.426 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.941 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.166 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.367 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds