Wall clock time and date at job start Tue Mar 31 2020 20:38:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.45196 * 109.47576 * 2 1 4 4 C 1.34224 * 117.00713 * 179.97438 * 3 2 1 5 5 O 1.20832 * 119.99738 * 359.97438 * 4 3 2 6 6 C 1.50695 * 120.00573 * 179.97438 * 4 3 2 7 7 C 1.53000 * 109.47275 * 179.97438 * 6 4 3 8 8 C 1.53039 * 109.45820 * 175.00205 * 7 6 4 9 9 C 1.53194 * 109.31218 * 181.38696 * 8 7 6 10 10 N 1.46927 * 108.77615 * 305.36600 * 9 8 7 11 11 C 1.34779 * 120.62966 * 233.58737 * 10 9 8 12 12 O 1.21587 * 119.99753 * 354.92960 * 11 10 9 13 13 N 1.34772 * 119.99718 * 174.93365 * 11 10 9 14 14 C 1.46505 * 119.99855 * 185.02528 * 13 11 10 15 15 C 1.52997 * 109.47084 * 185.00915 * 14 13 11 16 16 C 1.50703 * 115.54846 * 275.57191 * 15 14 13 17 17 H 1.08001 * 120.00046 * 114.79809 * 16 15 14 18 18 C 1.37880 * 119.99936 * 294.79176 * 16 15 14 19 19 N 1.31514 * 120.00012 * 352.06984 * 18 16 15 20 20 Si 1.86794 * 119.99842 * 172.06663 * 18 16 15 21 21 H 1.48501 * 109.47441 * 60.00153 * 20 18 16 22 22 H 1.48505 * 109.47213 * 180.02562 * 20 18 16 23 23 H 1.48505 * 109.47335 * 300.00057 * 20 18 16 24 24 C 1.53003 * 117.49998 * 129.86847 * 15 14 13 25 25 C 1.52994 * 117.50220 * 61.24592 * 15 14 13 26 26 C 1.46926 * 118.73969 * 53.85627 * 10 9 8 27 27 C 1.53040 * 109.45940 * 295.06908 * 7 6 4 28 28 H 1.09009 * 109.46715 * 60.00139 * 1 2 3 29 29 H 1.09003 * 109.47110 * 179.97438 * 1 2 3 30 30 H 1.08998 * 109.47507 * 300.00860 * 1 2 3 31 31 H 1.08998 * 109.47507 * 239.99140 * 2 1 3 32 32 H 1.09009 * 109.46715 * 119.99861 * 2 1 3 33 33 H 1.09010 * 109.46887 * 59.99982 * 6 4 3 34 34 H 1.08993 * 109.47441 * 300.00308 * 6 4 3 35 35 H 1.08993 * 109.45818 * 55.02855 * 7 6 4 36 36 H 1.09001 * 109.49922 * 61.43268 * 8 7 6 37 37 H 1.09003 * 109.52569 * 301.35202 * 8 7 6 38 38 H 1.08996 * 109.58666 * 185.57697 * 9 8 7 39 39 H 1.08999 * 109.70414 * 65.22323 * 9 8 7 40 40 H 0.97002 * 120.00388 * 5.02743 * 13 11 10 41 41 H 1.09005 * 109.47002 * 305.01105 * 14 13 11 42 42 H 1.08996 * 109.46975 * 65.00432 * 14 13 11 43 43 H 0.97003 * 119.99721 * 185.00083 * 19 18 16 44 44 H 1.09000 * 117.49407 * 359.97438 * 24 15 14 45 45 H 1.08999 * 117.50286 * 145.01905 * 24 15 14 46 46 H 1.09003 * 117.50192 * 214.98195 * 25 15 14 47 47 H 1.09004 * 117.49779 * 359.97169 * 25 15 14 48 48 H 1.09002 * 109.58439 * 65.93114 * 26 10 9 49 49 H 1.08998 * 109.58820 * 186.35679 * 26 10 9 50 50 H 1.09001 * 109.49637 * 298.56238 * 27 7 6 51 51 H 1.09000 * 109.49727 * 58.63430 * 27 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0141 1.3689 0.0000 4 6 3.3447 1.5448 0.0005 5 8 4.0808 0.5866 0.0015 6 6 3.9208 2.9373 0.0000 7 6 5.4487 2.8572 0.0014 8 6 6.0332 4.2659 -0.1249 9 6 7.5623 4.1789 -0.1580 10 7 8.0197 3.4398 1.0266 11 6 8.9422 3.9707 1.8534 12 8 9.4717 5.0290 1.5740 13 7 9.2778 3.3284 2.9897 14 6 10.1973 3.9564 3.9419 15 6 10.5075 2.9753 5.0741 16 6 9.5074 2.9461 6.2011 17 1 8.9238 2.0556 6.3822 18 6 9.3375 4.0563 7.0009 19 7 10.1519 5.0822 6.8835 20 14 7.9504 4.1031 8.2512 21 1 8.1165 2.9873 9.2169 22 1 7.9834 5.3972 8.9789 23 1 6.6482 3.9624 7.5514 24 6 11.9784 2.7474 5.4283 25 6 11.1892 1.6576 4.7002 26 6 7.4567 2.1083 1.2895 27 6 5.9247 2.2209 1.3094 28 1 -0.3633 0.5139 -0.8901 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5139 0.8899 31 1 1.8934 -0.5139 -0.8899 32 1 1.8933 -0.5139 0.8901 33 1 3.5844 3.4700 0.8896 34 1 3.5853 3.4690 -0.8904 35 1 5.7812 2.2493 -0.8399 36 1 5.7214 4.8671 0.7292 37 1 5.6751 4.7278 -1.0450 38 1 7.9857 5.1832 -0.1480 39 1 7.8813 3.6569 -1.0601 40 1 8.9106 2.4504 3.1772 41 1 11.1217 4.2255 3.4307 42 1 9.7361 4.8536 4.3546 43 1 10.0783 5.8322 7.4942 44 1 12.7251 3.2962 4.8544 45 1 12.2231 2.5764 6.4767 46 1 10.9145 0.7696 5.2695 47 1 11.4162 1.4894 3.6475 48 1 7.7650 1.4195 0.5030 49 1 7.8104 1.7461 2.2547 50 1 5.6139 2.8414 2.1499 51 1 5.4889 1.2269 1.4101 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000431105839.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:38:41 Heat of formation + Delta-G solvation = -118.297429 kcal Electronic energy + Delta-G solvation = -30084.245032 eV Core-core repulsion = 25983.464491 eV Total energy + Delta-G solvation = -4100.780542 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.204 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -41.74035 -41.21926 -39.13384 -38.36796 -37.49967 -35.26046 -34.58360 -34.04522 -32.65293 -31.92582 -30.12528 -28.09142 -27.05283 -25.34089 -24.26869 -23.79960 -23.01607 -22.18441 -21.34445 -21.17306 -20.39904 -19.26901 -18.61014 -17.96676 -17.67099 -17.27315 -17.08785 -16.75366 -16.43905 -15.84726 -15.65898 -15.36134 -15.16174 -15.12752 -14.74774 -14.68683 -14.37927 -14.25382 -13.82060 -13.59458 -13.53954 -13.40552 -13.19463 -12.95546 -12.89733 -12.78679 -12.69310 -12.48538 -12.38240 -12.21681 -12.06258 -12.00460 -11.78442 -11.55356 -11.48740 -11.43602 -11.11456 -11.07590 -10.95671 -10.51761 -10.09827 -10.03575 -9.37453 -8.10839 -6.22399 1.23323 1.42019 1.44194 1.50751 1.73534 1.75318 2.21652 2.41776 3.00881 3.16074 3.54785 3.59860 3.73426 3.75960 4.01397 4.02473 4.10268 4.13538 4.22035 4.29789 4.36628 4.41384 4.51624 4.54311 4.60058 4.64090 4.67596 4.71856 4.79716 4.85625 4.90117 4.93081 4.95030 4.96792 5.02074 5.03390 5.12117 5.13372 5.20358 5.24365 5.45016 5.55096 5.56684 5.57525 5.65340 5.75283 5.81710 6.03786 6.36405 6.78684 6.81961 7.09935 7.44992 7.65171 8.96619 Molecular weight = 338.20amu Principal moments of inertia in cm(-1) A = 0.011072 B = 0.002768 C = 0.002456 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2528.399272 B =10112.586945 C =11399.186383 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.054 3.946 3 O -0.366 6.366 4 C 0.460 3.540 5 O -0.532 6.532 6 C -0.105 4.105 7 C -0.068 4.068 8 C -0.119 4.119 9 C 0.124 3.876 10 N -0.627 5.627 11 C 0.696 3.304 12 O -0.644 6.644 13 N -0.722 5.722 14 C 0.200 3.800 15 C 0.010 3.990 16 C -0.507 4.507 17 H 0.061 0.939 18 C 0.025 3.975 19 N -0.907 5.907 20 Si 0.950 3.050 21 H -0.269 1.269 22 H -0.289 1.289 23 H -0.272 1.272 24 C -0.173 4.173 25 C -0.173 4.173 26 C 0.113 3.887 27 C -0.132 4.132 28 H 0.070 0.930 29 H 0.096 0.904 30 H 0.065 0.935 31 H 0.070 0.930 32 H 0.064 0.936 33 H 0.116 0.884 34 H 0.137 0.863 35 H 0.086 0.914 36 H 0.059 0.941 37 H 0.110 0.890 38 H 0.071 0.929 39 H 0.082 0.918 40 H 0.403 0.597 41 H 0.026 0.974 42 H 0.034 0.966 43 H 0.260 0.740 44 H 0.069 0.931 45 H 0.069 0.931 46 H 0.089 0.911 47 H 0.087 0.913 48 H 0.084 0.916 49 H 0.074 0.926 50 H 0.055 0.945 51 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.678 -8.749 -17.506 27.053 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.020 4.020 3 O -0.283 6.283 4 C 0.305 3.695 5 O -0.422 6.422 6 C -0.142 4.142 7 C -0.086 4.086 8 C -0.157 4.157 9 C 0.002 3.998 10 N -0.365 5.365 11 C 0.398 3.602 12 O -0.527 6.527 13 N -0.378 5.378 14 C 0.075 3.925 15 C 0.009 3.991 16 C -0.545 4.545 17 H 0.079 0.921 18 C -0.176 4.176 19 N -0.544 5.544 20 Si 0.776 3.224 21 H -0.194 1.194 22 H -0.215 1.215 23 H -0.197 1.197 24 C -0.212 4.212 25 C -0.210 4.210 26 C -0.010 4.010 27 C -0.170 4.170 28 H 0.089 0.911 29 H 0.115 0.885 30 H 0.084 0.916 31 H 0.088 0.912 32 H 0.082 0.918 33 H 0.134 0.866 34 H 0.155 0.845 35 H 0.104 0.896 36 H 0.078 0.922 37 H 0.128 0.872 38 H 0.089 0.911 39 H 0.100 0.900 40 H 0.241 0.759 41 H 0.044 0.956 42 H 0.052 0.948 43 H 0.069 0.931 44 H 0.088 0.912 45 H 0.087 0.913 46 H 0.107 0.893 47 H 0.106 0.894 48 H 0.103 0.897 49 H 0.092 0.908 50 H 0.074 0.926 51 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -18.124 -8.089 -17.642 26.554 hybrid contribution -0.260 -0.217 1.283 1.327 sum -18.383 -8.306 -16.359 25.972 Atomic orbital electron populations 1.21823 0.90800 1.04202 1.03649 1.23220 0.96856 0.79508 1.02405 1.86515 1.24626 1.33421 1.83776 1.24269 0.80386 0.93564 0.71261 1.90645 1.60702 1.44374 1.46445 1.21565 0.95015 0.89786 1.07844 1.20918 0.92474 0.96836 0.98416 1.21934 0.93501 0.96160 1.04067 1.21580 0.94978 0.97105 0.86132 1.47359 1.42232 1.19759 1.27127 1.16157 0.80350 0.83148 0.80592 1.90820 1.59155 1.25761 1.76964 1.45261 1.50469 1.22406 1.19660 1.20374 0.89928 0.95307 0.86848 1.19058 0.92257 0.93338 0.94437 1.20688 1.21147 0.98879 1.13769 0.92056 1.25707 0.97770 0.95139 0.99022 1.70088 1.38081 1.08437 1.37764 0.85739 0.80258 0.77203 0.79198 1.19358 1.21490 1.19750 1.22670 0.96025 1.03499 0.98986 1.22875 1.05787 0.93012 0.99339 1.21817 0.94178 0.83043 1.01957 1.22142 0.94502 1.02396 0.97971 0.91089 0.88524 0.91552 0.91197 0.91782 0.86634 0.84547 0.89587 0.92183 0.87203 0.91077 0.90018 0.75931 0.95604 0.94757 0.93071 0.91215 0.91257 0.89285 0.89426 0.89736 0.90789 0.92607 0.89662 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.23 10.29 71.98 0.74 -0.49 16 2 C 0.05 0.73 6.19 71.98 0.45 1.17 16 3 O -0.37 -6.09 10.22 -51.36 -0.52 -6.62 16 4 C 0.46 8.12 7.67 71.23 0.55 8.66 16 5 O -0.53 -12.27 13.72 21.95 0.30 -11.97 16 6 C -0.10 -1.28 5.29 29.85 0.16 -1.13 16 7 C -0.07 -1.08 1.80 -10.77 -0.02 -1.10 16 8 C -0.12 -1.95 5.36 30.67 0.16 -1.78 16 9 C 0.12 2.95 6.42 86.36 0.55 3.50 16 10 N -0.63 -18.73 2.97 -836.05 -2.48 -21.21 16 11 C 0.70 28.30 8.29 179.06 1.49 29.78 16 12 O -0.64 -31.55 15.76 -3.99 -0.06 -31.61 16 13 N -0.72 -29.79 5.37 -478.53 -2.57 -32.36 16 14 C 0.20 9.85 5.53 86.38 0.48 10.33 16 15 C 0.01 0.48 1.32 -52.93 -0.07 0.41 16 16 C -0.51 -26.68 8.82 25.60 0.23 -26.46 16 17 H 0.06 3.13 7.83 -2.91 -0.02 3.11 16 18 C 0.02 1.33 5.22 84.66 0.44 1.77 16 19 N -0.91 -52.32 12.60 21.45 0.27 -52.05 16 20 Si 0.95 42.90 29.55 68.60 2.03 44.93 16 21 H -0.27 -11.66 7.11 99.48 0.71 -10.95 16 22 H -0.29 -13.07 7.11 99.48 0.71 -12.36 16 23 H -0.27 -12.00 7.11 99.48 0.71 -11.29 16 24 C -0.17 -7.97 9.88 30.59 0.30 -7.67 16 25 C -0.17 -6.96 9.78 30.59 0.30 -6.66 16 26 C 0.11 2.71 6.46 86.51 0.56 3.27 16 27 C -0.13 -2.78 5.13 30.82 0.16 -2.62 16 28 H 0.07 0.54 8.14 -2.38 -0.02 0.52 16 29 H 0.10 0.47 8.14 -2.39 -0.02 0.46 16 30 H 0.07 0.58 8.14 -2.39 -0.02 0.56 16 31 H 0.07 0.93 8.13 -2.39 -0.02 0.91 16 32 H 0.06 0.94 8.13 -2.38 -0.02 0.92 16 33 H 0.12 1.29 8.14 -2.38 -0.02 1.27 16 34 H 0.14 0.90 8.14 -2.39 -0.02 0.88 16 35 H 0.09 1.37 7.95 -2.39 -0.02 1.35 16 36 H 0.06 1.16 8.14 -2.39 -0.02 1.14 16 37 H 0.11 1.11 8.14 -2.39 -0.02 1.09 16 38 H 0.07 2.04 7.03 -2.39 -0.02 2.03 16 39 H 0.08 1.59 8.14 -2.39 -0.02 1.57 16 40 H 0.40 14.75 5.87 -92.71 -0.54 14.21 16 41 H 0.03 1.31 7.87 -2.38 -0.02 1.29 16 42 H 0.03 1.97 7.26 -2.39 -0.02 1.95 16 43 H 0.26 14.49 8.32 -92.71 -0.77 13.72 16 44 H 0.07 3.10 8.06 -2.39 -0.02 3.08 16 45 H 0.07 3.33 8.14 -2.39 -0.02 3.31 16 46 H 0.09 3.39 8.14 -2.39 -0.02 3.37 16 47 H 0.09 3.17 8.14 -2.38 -0.02 3.15 16 48 H 0.08 1.76 8.14 -2.39 -0.02 1.74 16 49 H 0.07 1.89 5.56 -2.39 -0.01 1.88 16 50 H 0.06 1.31 8.14 -2.39 -0.02 1.29 16 51 H 0.09 1.89 5.93 -2.39 -0.01 1.88 16 Total: -1.00 -71.63 408.75 3.80 -67.83 By element: Atomic # 1 Polarization: 31.70 SS G_CDS: 0.37 Total: 32.07 kcal Atomic # 6 Polarization: 4.52 SS G_CDS: 6.47 Total: 10.99 kcal Atomic # 7 Polarization: -100.83 SS G_CDS: -4.78 Total: -105.61 kcal Atomic # 8 Polarization: -49.91 SS G_CDS: -0.29 Total: -50.20 kcal Atomic # 14 Polarization: 42.90 SS G_CDS: 2.03 Total: 44.93 kcal Total: -71.63 3.80 -67.83 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000431105839.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.472 kcal (2) G-P(sol) polarization free energy of solvation -71.626 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.098 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.800 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.826 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.297 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds