Wall clock time and date at job start Tue Mar 31 2020 21:45:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.42899 * 114.00090 * 2 1 4 4 C 1.53000 * 109.47656 * 180.02562 * 3 2 1 5 5 N 1.46497 * 109.46922 * 64.99768 * 4 3 2 6 6 C 1.37100 * 120.00379 * 270.00557 * 5 4 3 7 7 H 1.07996 * 120.00323 * 135.48701 * 6 5 4 8 8 C 1.38955 * 119.99593 * 315.48314 * 6 5 4 9 9 N 1.31415 * 119.99921 * 1.84541 * 8 6 5 10 10 Si 1.86795 * 119.99789 * 181.85139 * 8 6 5 11 11 H 1.48494 * 109.47529 * 59.99926 * 10 8 6 12 12 H 1.48504 * 109.47110 * 180.02562 * 10 8 6 13 13 H 1.48503 * 109.47234 * 299.99718 * 10 8 6 14 14 C 1.34780 * 120.00112 * 90.00199 * 5 4 3 15 15 O 1.21298 * 119.99688 * 355.85351 * 14 5 4 16 16 C 1.50697 * 120.00336 * 175.85503 * 14 5 4 17 17 C 1.53496 * 114.20827 * 182.19816 * 16 14 5 18 18 N 1.47066 * 87.98912 * 139.65314 * 17 16 14 19 19 C 1.34771 * 136.05733 * 152.84608 * 18 17 16 20 20 O 1.21275 * 120.00615 * 4.96344 * 19 18 17 21 21 C 1.50704 * 119.99952 * 184.96285 * 19 18 17 22 22 C 1.52994 * 109.47273 * 145.32925 * 21 19 18 23 23 C 1.53003 * 109.47186 * 180.02562 * 22 21 19 24 24 C 1.52995 * 109.47254 * 299.99767 * 23 22 21 25 25 C 1.53010 * 109.46833 * 59.99759 * 24 23 22 26 26 C 1.52989 * 109.47238 * 300.00151 * 25 24 23 27 27 C 1.47068 * 87.88361 * 333.09933 * 18 17 16 28 28 H 1.08997 * 109.47549 * 299.99417 * 1 2 3 29 29 H 1.08994 * 109.47476 * 60.00051 * 1 2 3 30 30 H 1.09005 * 109.47185 * 179.97438 * 1 2 3 31 31 H 1.09005 * 109.47317 * 59.99915 * 3 2 1 32 32 H 1.08999 * 109.47116 * 300.00214 * 3 2 1 33 33 H 1.09006 * 109.46813 * 305.00215 * 4 3 2 34 34 H 1.08996 * 109.47570 * 184.99856 * 4 3 2 35 35 H 0.97000 * 119.99600 * 185.00744 * 9 8 6 36 36 H 1.08995 * 113.28231 * 49.12287 * 16 14 5 37 37 H 1.09003 * 113.46865 * 24.86615 * 17 16 14 38 38 H 1.09007 * 113.46646 * 254.43387 * 17 16 14 39 39 H 1.09006 * 109.47092 * 25.32666 * 21 19 18 40 40 H 1.09006 * 109.47057 * 299.99727 * 22 21 19 41 41 H 1.08998 * 109.47556 * 60.00007 * 22 21 19 42 42 H 1.08998 * 109.47049 * 179.97438 * 23 22 21 43 43 H 1.09003 * 109.47173 * 60.00203 * 23 22 21 44 44 H 1.08998 * 109.47185 * 300.00719 * 24 23 22 45 45 H 1.08995 * 109.47452 * 180.02562 * 24 23 22 46 46 H 1.09003 * 109.46976 * 179.97438 * 25 24 23 47 47 H 1.08998 * 109.46451 * 60.00510 * 25 24 23 48 48 H 1.09000 * 109.47804 * 300.00125 * 26 25 24 49 49 H 1.09004 * 109.47112 * 179.97438 * 26 25 24 50 50 H 1.08991 * 113.46813 * 141.67840 * 27 18 17 51 51 H 1.09000 * 113.46928 * 272.12348 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5354 1.1847 -0.0006 5 7 3.9756 0.5645 -1.2527 6 6 4.0968 -0.7985 -1.3370 7 1 3.7183 -1.3218 -2.2026 8 6 4.7068 -1.5066 -0.3088 9 7 5.1349 -0.8742 0.7607 10 14 4.9184 -3.3574 -0.4468 11 1 5.7446 -3.6737 -1.6395 12 1 5.5921 -3.8710 0.7729 13 1 3.5862 -3.9992 -0.5832 14 6 4.2614 1.3338 -2.3218 15 8 4.0825 2.5325 -2.2717 16 6 4.8032 0.7049 -3.5796 17 6 5.1316 1.7081 -4.6939 18 7 6.3395 0.9186 -4.9775 19 6 7.1185 0.6891 -6.0532 20 8 6.9099 1.2817 -7.0905 21 6 8.2488 -0.3039 -5.9669 22 6 8.4019 -1.0204 -7.3100 23 6 9.5491 -2.0290 -7.2222 24 6 10.8485 -1.2953 -6.8846 25 6 10.6954 -0.5786 -5.5414 26 6 9.5483 0.4298 -5.6293 27 6 6.3197 0.4846 -3.5725 28 1 -0.3634 0.5137 0.8900 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3634 -1.0277 -0.0005 31 1 1.6886 1.8464 0.8900 32 1 1.6885 1.8464 -0.8900 33 1 3.8514 0.5683 0.8410 34 1 3.9785 2.1766 0.0889 35 1 5.6250 -1.3560 1.4453 36 1 4.2278 -0.1593 -3.9114 37 1 5.3453 2.7115 -4.3255 38 1 4.4084 1.7031 -5.5095 39 1 8.0318 -1.0347 -5.1878 40 1 7.4762 -1.5435 -7.5502 41 1 8.6190 -0.2896 -8.0890 42 1 9.6578 -2.5397 -8.1789 43 1 9.3315 -2.7598 -6.4432 44 1 11.0660 -0.5644 -7.6635 45 1 11.6658 -2.0137 -6.8225 46 1 11.6213 -0.0563 -5.3007 47 1 10.4779 -1.3095 -4.7626 48 1 9.7657 1.1607 -6.4082 49 1 9.4390 0.9400 -4.6722 50 1 6.6046 -0.5586 -3.4364 51 1 6.8531 1.1587 -2.9023 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000457198307.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:45:11 Heat of formation + Delta-G solvation = -91.484696 kcal Electronic energy + Delta-G solvation = -30829.730485 eV Core-core repulsion = 26730.112631 eV Total energy + Delta-G solvation = -4099.617854 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.204 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -40.49183 -39.15054 -37.88647 -37.04241 -36.50331 -34.72639 -31.59665 -31.48375 -30.85942 -29.93269 -28.68207 -25.86689 -25.65356 -24.85087 -24.02894 -22.75756 -22.58707 -21.05043 -19.85913 -19.11022 -18.56966 -17.35223 -16.70187 -16.30619 -16.02262 -15.48256 -15.37156 -14.95534 -14.88718 -14.43938 -14.35877 -14.30548 -14.17757 -13.92192 -13.53403 -13.43015 -13.16172 -12.45255 -12.35462 -12.32646 -12.24010 -12.07577 -11.90309 -11.78375 -11.40077 -11.36287 -11.25592 -11.21445 -11.02850 -10.94164 -10.76083 -10.71135 -10.53122 -10.40147 -10.21498 -10.19545 -10.04960 -9.45696 -9.09259 -8.95426 -8.62343 -8.32259 -7.51767 -6.30568 -4.16838 2.82890 3.08420 3.11792 3.20000 3.21582 3.69454 4.08103 4.45398 4.52249 4.59020 4.64170 4.68944 4.90615 4.99072 5.07221 5.14379 5.16216 5.33725 5.35620 5.40196 5.43279 5.51638 5.66101 5.67807 5.72526 5.74185 5.81820 5.89512 5.91109 5.96392 5.97977 5.98924 6.01267 6.03483 6.06747 6.08280 6.09582 6.17285 6.19859 6.31952 6.36080 6.38781 6.60859 6.74574 7.29230 7.57860 7.83823 8.01299 8.03738 8.36991 8.39300 9.06722 9.41885 9.84451 10.66973 Molecular weight = 338.20amu Principal moments of inertia in cm(-1) A = 0.013152 B = 0.003308 C = 0.002891 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2128.501618 B = 8462.905586 C = 9682.544542 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.361 6.361 3 C 0.054 3.946 4 C 0.099 3.901 5 N -0.424 5.424 6 C -0.316 4.316 7 H 0.084 0.916 8 C 0.053 3.947 9 N -0.872 5.872 10 Si 0.915 3.085 11 H -0.273 1.273 12 H -0.284 1.284 13 H -0.273 1.273 14 C 0.483 3.517 15 O -0.605 6.605 16 C -0.119 4.119 17 C 0.121 3.879 18 N -0.647 5.647 19 C 0.546 3.454 20 O -0.552 6.552 21 C -0.099 4.099 22 C -0.102 4.102 23 C -0.119 4.119 24 C -0.121 4.121 25 C -0.117 4.117 26 C -0.106 4.106 27 C 0.128 3.872 28 H 0.029 0.971 29 H 0.030 0.970 30 H 0.076 0.924 31 H 0.036 0.964 32 H 0.036 0.964 33 H 0.136 0.864 34 H 0.065 0.935 35 H 0.270 0.730 36 H 0.116 0.884 37 H 0.095 0.905 38 H 0.073 0.927 39 H 0.090 0.910 40 H 0.063 0.937 41 H 0.074 0.926 42 H 0.063 0.937 43 H 0.063 0.937 44 H 0.062 0.938 45 H 0.061 0.939 46 H 0.064 0.936 47 H 0.065 0.935 48 H 0.068 0.932 49 H 0.067 0.933 50 H 0.085 0.915 51 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.361 -2.765 -6.547 8.902 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.279 6.279 3 C -0.023 4.023 4 C -0.024 4.024 5 N -0.141 5.141 6 C -0.444 4.444 7 H 0.101 0.899 8 C -0.151 4.151 9 N -0.510 5.510 10 Si 0.742 3.258 11 H -0.199 1.199 12 H -0.210 1.210 13 H -0.198 1.198 14 C 0.271 3.729 15 O -0.491 6.491 16 C -0.141 4.141 17 C -0.002 4.002 18 N -0.382 5.382 19 C 0.336 3.664 20 O -0.430 6.430 21 C -0.121 4.121 22 C -0.140 4.140 23 C -0.156 4.156 24 C -0.158 4.158 25 C -0.155 4.155 26 C -0.144 4.144 27 C 0.005 3.995 28 H 0.047 0.953 29 H 0.049 0.951 30 H 0.095 0.905 31 H 0.055 0.945 32 H 0.054 0.946 33 H 0.154 0.846 34 H 0.083 0.917 35 H 0.081 0.919 36 H 0.134 0.866 37 H 0.113 0.887 38 H 0.091 0.909 39 H 0.108 0.892 40 H 0.082 0.918 41 H 0.092 0.908 42 H 0.082 0.918 43 H 0.082 0.918 44 H 0.081 0.919 45 H 0.079 0.921 46 H 0.083 0.917 47 H 0.084 0.916 48 H 0.087 0.913 49 H 0.085 0.915 50 H 0.104 0.896 51 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 5.450 -2.153 -7.004 9.132 hybrid contribution -0.341 -0.783 0.222 0.883 sum 5.108 -2.936 -6.782 8.984 Atomic orbital electron populations 1.22633 0.83700 1.01625 0.98709 1.88162 1.17070 1.27671 1.94982 1.23005 0.96840 0.84231 0.98252 1.21898 0.89112 0.99210 0.92224 1.43308 1.55508 1.06196 1.09087 1.19251 1.37743 0.80898 1.06549 0.89877 1.25388 0.95034 0.99762 0.94963 1.69474 1.35951 1.36965 1.08654 0.86190 0.78740 0.83166 0.77726 1.19865 1.20964 1.19798 1.19973 0.81144 0.86172 0.85641 1.90543 1.59132 1.15216 1.84222 1.22630 0.96784 0.99722 0.94939 1.22908 0.85012 0.96561 0.95726 1.49782 1.29391 1.48721 1.10271 1.20182 0.81612 0.82815 0.81788 1.90655 1.71167 1.51530 1.29650 1.21250 0.93583 0.96904 1.00332 1.21393 0.98666 0.98082 0.95827 1.21544 0.94664 0.97784 1.01633 1.21556 0.97376 0.99382 0.97492 1.21523 0.97985 0.98259 0.97707 1.21440 0.92813 0.97987 1.02162 1.22734 0.95007 1.01469 0.80267 0.95263 0.95147 0.90522 0.94542 0.94576 0.84640 0.91655 0.91905 0.86648 0.88713 0.90857 0.89167 0.91774 0.90780 0.91781 0.91795 0.91948 0.92056 0.91691 0.91592 0.91298 0.91469 0.89633 0.89458 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.49 11.01 101.05 1.11 1.60 16 2 O -0.36 -7.56 10.18 -35.23 -0.36 -7.92 16 3 C 0.05 1.11 6.28 37.16 0.23 1.34 16 4 C 0.10 2.25 5.40 -4.04 -0.02 2.23 16 5 N -0.42 -9.85 2.51 -114.81 -0.29 -10.14 16 6 C -0.32 -7.37 7.99 -14.93 -0.12 -7.49 16 7 H 0.08 1.89 7.08 -52.49 -0.37 1.52 16 8 C 0.05 1.24 5.37 -17.46 -0.09 1.15 16 9 N -0.87 -21.40 10.73 55.50 0.60 -20.81 16 10 Si 0.92 18.57 29.56 -169.99 -5.02 13.55 16 11 H -0.27 -5.35 7.11 56.52 0.40 -4.95 16 12 H -0.28 -5.83 7.11 56.52 0.40 -5.43 16 13 H -0.27 -5.64 7.11 56.52 0.40 -5.23 16 14 C 0.48 10.72 7.19 -10.99 -0.08 10.64 16 15 O -0.60 -14.66 15.58 5.54 0.09 -14.57 16 16 C -0.12 -2.19 3.41 -91.39 -0.31 -2.50 16 17 C 0.12 2.12 7.96 -8.51 -0.07 2.05 16 18 N -0.65 -10.83 3.69 -185.39 -0.68 -11.51 16 19 C 0.55 9.09 7.08 -10.99 -0.08 9.02 16 20 O -0.55 -10.90 17.04 5.56 0.09 -10.81 16 21 C -0.10 -1.29 2.41 -91.77 -0.22 -1.51 16 22 C -0.10 -1.20 4.86 -26.73 -0.13 -1.33 16 23 C -0.12 -1.12 5.92 -26.73 -0.16 -1.28 16 24 C -0.12 -1.07 5.92 -26.73 -0.16 -1.22 16 25 C -0.12 -1.11 5.92 -26.73 -0.16 -1.27 16 26 C -0.11 -1.23 5.19 -26.73 -0.14 -1.37 16 27 C 0.13 2.13 7.81 -8.64 -0.07 2.06 16 28 H 0.03 0.41 8.14 -51.93 -0.42 -0.02 16 29 H 0.03 0.45 8.14 -51.93 -0.42 0.03 16 30 H 0.08 1.09 8.14 -51.93 -0.42 0.67 16 31 H 0.04 0.66 8.14 -51.93 -0.42 0.23 16 32 H 0.04 0.75 8.14 -51.93 -0.42 0.33 16 33 H 0.14 3.34 5.15 -51.93 -0.27 3.07 16 34 H 0.07 1.49 7.48 -51.93 -0.39 1.10 16 35 H 0.27 6.36 8.32 -40.82 -0.34 6.02 16 36 H 0.12 2.06 7.35 -51.93 -0.38 1.68 16 37 H 0.09 1.75 7.48 -51.93 -0.39 1.36 16 38 H 0.07 1.24 8.14 -51.92 -0.42 0.82 16 39 H 0.09 1.12 7.61 -51.93 -0.40 0.73 16 40 H 0.06 0.78 8.14 -51.93 -0.42 0.35 16 41 H 0.07 0.95 7.86 -51.93 -0.41 0.54 16 42 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 43 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 44 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 45 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 46 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 47 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 48 H 0.07 0.84 8.14 -51.93 -0.42 0.41 16 49 H 0.07 0.80 8.14 -51.93 -0.42 0.37 16 50 H 0.09 1.33 7.85 -51.93 -0.41 0.92 16 51 H 0.09 1.49 8.10 -51.93 -0.42 1.06 16 LS Contribution 406.75 15.07 6.13 6.13 Total: -1.00 -28.77 406.75 -8.81 -37.58 By element: Atomic # 1 Polarization: 15.29 SS G_CDS: -8.91 Total: 6.39 kcal Atomic # 6 Polarization: 12.57 SS G_CDS: -0.46 Total: 12.11 kcal Atomic # 7 Polarization: -42.08 SS G_CDS: -0.38 Total: -42.46 kcal Atomic # 8 Polarization: -33.12 SS G_CDS: -0.18 Total: -33.30 kcal Atomic # 14 Polarization: 18.57 SS G_CDS: -5.02 Total: 13.55 kcal Total LS contribution 6.13 Total: 6.13 kcal Total: -28.77 -8.81 -37.58 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000457198307.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.904 kcal (2) G-P(sol) polarization free energy of solvation -28.769 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.673 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.812 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.580 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.485 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds