Wall clock time and date at job start Tue Mar 31 2020 21:45:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42907 * 113.99487 * 2 1 4 4 C 1.53002 * 109.46771 * 180.02562 * 3 2 1 5 5 N 1.46491 * 109.47603 * 65.00088 * 4 3 2 6 6 C 1.37099 * 120.00471 * 270.00369 * 5 4 3 7 7 H 1.07991 * 120.00646 * 145.14074 * 6 5 4 8 8 C 1.38954 * 119.99434 * 325.14562 * 6 5 4 9 9 N 1.31413 * 119.99955 * 337.42298 * 8 6 5 10 10 Si 1.86799 * 120.00004 * 157.42719 * 8 6 5 11 11 H 1.48503 * 109.46967 * 89.99722 * 10 8 6 12 12 H 1.48497 * 109.47255 * 209.99254 * 10 8 6 13 13 H 1.48498 * 109.47027 * 329.99879 * 10 8 6 14 14 C 1.34778 * 120.00200 * 89.99549 * 5 4 3 15 15 O 1.21294 * 119.99404 * 4.90612 * 14 5 4 16 16 C 1.50697 * 120.00120 * 184.90423 * 14 5 4 17 17 C 1.53005 * 109.46719 * 177.66184 * 16 14 5 18 18 C 1.53002 * 109.46780 * 179.97438 * 17 16 14 19 19 N 1.46502 * 109.47083 * 179.97438 * 18 17 16 20 20 C 1.34779 * 120.00250 * 179.97438 * 19 18 17 21 21 O 1.21281 * 119.99691 * 0.02562 * 20 19 18 22 22 C 1.50695 * 120.00217 * 180.02562 * 20 19 18 23 23 H 1.09001 * 109.63764 * 300.42035 * 22 20 19 24 24 C 1.53023 * 109.64347 * 61.05449 * 22 20 19 25 25 C 1.50068 * 110.14742 * 169.12061 * 24 22 20 26 26 C 1.29440 * 124.07655 * 342.87101 * 25 24 22 27 27 C 1.50073 * 124.07472 * 0.46898 * 26 25 24 28 28 C 1.53025 * 110.14850 * 342.86728 * 27 26 25 29 29 H 1.09003 * 109.47428 * 59.99879 * 1 2 3 30 30 H 1.09001 * 109.47033 * 179.97438 * 1 2 3 31 31 H 1.09004 * 109.47455 * 299.99549 * 1 2 3 32 32 H 1.09002 * 109.47199 * 60.00201 * 3 2 1 33 33 H 1.08996 * 109.47665 * 299.99784 * 3 2 1 34 34 H 1.09011 * 109.46982 * 304.99709 * 4 3 2 35 35 H 1.09001 * 109.47042 * 185.00840 * 4 3 2 36 36 H 0.97002 * 119.99620 * 185.02621 * 9 8 6 37 37 H 1.08994 * 109.47234 * 57.66437 * 16 14 5 38 38 H 1.08997 * 109.47086 * 297.65650 * 16 14 5 39 39 H 1.09002 * 109.47301 * 60.00265 * 17 16 14 40 40 H 1.08994 * 109.47351 * 299.99837 * 17 16 14 41 41 H 1.08999 * 109.47514 * 300.00104 * 18 17 16 42 42 H 1.09002 * 109.46980 * 60.00077 * 18 17 16 43 43 H 0.97000 * 120.00078 * 0.02562 * 19 18 17 44 44 H 1.08993 * 109.36103 * 289.33051 * 24 22 20 45 45 H 1.09004 * 109.35570 * 48.91760 * 24 22 20 46 46 H 1.08000 * 117.96452 * 162.84999 * 25 24 22 47 47 H 1.08003 * 117.96397 * 180.48922 * 26 25 24 48 48 H 1.08997 * 109.35859 * 222.65841 * 27 26 25 49 49 H 1.09006 * 109.24756 * 103.00610 * 27 26 25 50 50 H 1.08998 * 109.64025 * 289.75619 * 28 27 26 51 51 H 1.08996 * 109.64114 * 169.11597 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3056 0.0000 4 6 3.5354 1.1848 -0.0006 5 7 3.9757 0.5646 -1.2526 6 6 4.0969 -0.7984 -1.3370 7 1 3.8635 -1.3051 -2.2616 8 6 4.5202 -1.5278 -0.2327 9 7 5.2127 -0.9399 0.7170 10 14 4.1049 -3.3441 -0.0980 11 1 5.1830 -4.1465 -0.7298 12 1 3.9830 -3.7192 1.3336 13 1 2.8187 -3.6104 -0.7908 14 6 4.2615 1.3340 -2.3217 15 8 4.2403 2.5426 -2.2221 16 6 4.6072 0.6925 -3.6408 17 6 4.8293 1.7800 -4.6940 18 6 5.1810 1.1288 -6.0331 19 7 5.3930 2.1700 -7.0417 20 6 5.7159 1.8287 -8.3050 21 8 5.8304 0.6597 -8.6068 22 6 5.9345 2.8997 -9.3423 23 1 5.0283 3.4958 -9.4500 24 6 7.0985 3.7976 -8.9173 25 6 7.4990 4.6959 -10.0507 26 6 7.1676 4.4966 -11.2860 27 6 6.3283 3.3448 -11.7560 28 6 6.2879 2.2510 -10.6866 29 1 -0.3634 0.5139 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5138 0.8900 32 1 1.6885 1.8465 0.8900 33 1 1.6885 1.8465 -0.8899 34 1 3.8514 0.5683 0.8410 35 1 3.9784 2.1767 0.0891 36 1 5.5704 -1.4633 1.4512 37 1 3.7894 0.0441 -3.9550 38 1 5.5170 0.1025 -3.5305 39 1 5.6472 2.4285 -4.3798 40 1 3.9196 2.3701 -4.8043 41 1 6.0908 0.5389 -5.9225 42 1 4.3634 0.4800 -6.3474 43 1 5.3017 3.1050 -6.8002 44 1 6.7939 4.4050 -8.0651 45 1 7.9476 3.1769 -8.6309 46 1 8.1008 5.5629 -9.8214 47 1 7.5173 5.2030 -12.0244 48 1 6.7542 2.9379 -12.6731 49 1 5.3150 3.6953 -11.9528 50 1 7.2640 1.7710 -10.6165 51 1 5.5304 1.5118 -10.9471 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000457204605.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:45:15 Heat of formation + Delta-G solvation = -118.296463 kcal Electronic energy + Delta-G solvation = -29261.635464 eV Core-core repulsion = 25160.854964 eV Total energy + Delta-G solvation = -4100.780500 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.204 amu Computer time = 1.54 seconds Orbital eigenvalues (eV) -40.26649 -38.73925 -37.87723 -37.00303 -35.47652 -34.62254 -32.54118 -31.54509 -31.37899 -30.96078 -29.31654 -26.61998 -25.74025 -24.64093 -24.03865 -23.07004 -22.10680 -21.06103 -20.15824 -18.96103 -18.22107 -17.38628 -16.91997 -16.17828 -16.08500 -15.72670 -15.50540 -15.32173 -15.19901 -14.70668 -14.33166 -14.31870 -14.27973 -13.96554 -13.89195 -13.46659 -13.40071 -13.10002 -12.68490 -12.52916 -12.45350 -12.01306 -11.88948 -11.61405 -11.42833 -11.26810 -11.14415 -11.10387 -11.00859 -11.00149 -10.91785 -10.63430 -10.54962 -10.35574 -10.31413 -10.01625 -9.72131 -9.31308 -9.13049 -9.01272 -8.96485 -8.41359 -7.46398 -6.30367 -3.93245 1.97694 2.61705 3.17038 3.18656 3.28950 3.35494 3.89982 4.19863 4.32488 4.37984 4.51938 4.58081 4.74120 4.90992 4.92817 5.00835 5.09252 5.14369 5.24109 5.34286 5.35079 5.38139 5.55928 5.61115 5.63349 5.65979 5.67261 5.72229 5.92816 5.96336 5.98441 5.99678 6.02669 6.04274 6.06797 6.24283 6.32988 6.33568 6.43778 6.50770 6.62378 6.62878 6.72434 6.79289 7.30651 7.50596 7.54975 7.83460 8.02917 8.21767 8.41620 9.15934 9.55362 9.96825 10.72783 Molecular weight = 338.20amu Principal moments of inertia in cm(-1) A = 0.016981 B = 0.002045 C = 0.001965 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1648.486353 B =13686.521554 C =14242.741996 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.362 6.362 3 C 0.055 3.945 4 C 0.107 3.893 5 N -0.428 5.428 6 C -0.325 4.325 7 H 0.088 0.912 8 C 0.051 3.949 9 N -0.865 5.865 10 Si 0.916 3.084 11 H -0.281 1.281 12 H -0.284 1.284 13 H -0.268 1.268 14 C 0.466 3.534 15 O -0.615 6.615 16 C -0.115 4.115 17 C -0.111 4.111 18 C 0.116 3.884 19 N -0.727 5.727 20 C 0.514 3.486 21 O -0.542 6.542 22 C -0.108 4.108 23 H 0.098 0.902 24 C -0.083 4.083 25 C -0.153 4.153 26 C -0.157 4.157 27 C -0.093 4.093 28 C -0.100 4.100 29 H 0.031 0.969 30 H 0.077 0.923 31 H 0.029 0.971 32 H 0.038 0.962 33 H 0.037 0.963 34 H 0.118 0.882 35 H 0.071 0.929 36 H 0.269 0.731 37 H 0.079 0.921 38 H 0.089 0.911 39 H 0.072 0.928 40 H 0.068 0.932 41 H 0.068 0.932 42 H 0.066 0.934 43 H 0.401 0.599 44 H 0.078 0.922 45 H 0.080 0.920 46 H 0.106 0.894 47 H 0.103 0.897 48 H 0.074 0.926 49 H 0.074 0.926 50 H 0.071 0.929 51 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.640 8.293 -15.763 17.822 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.280 6.280 3 C -0.023 4.023 4 C -0.017 4.017 5 N -0.145 5.145 6 C -0.453 4.453 7 H 0.105 0.895 8 C -0.154 4.154 9 N -0.502 5.502 10 Si 0.742 3.258 11 H -0.207 1.207 12 H -0.209 1.209 13 H -0.193 1.193 14 C 0.255 3.745 15 O -0.503 6.503 16 C -0.155 4.155 17 C -0.149 4.149 18 C -0.007 4.007 19 N -0.378 5.378 20 C 0.300 3.700 21 O -0.419 6.419 22 C -0.129 4.129 23 H 0.116 0.884 24 C -0.120 4.120 25 C -0.171 4.171 26 C -0.175 4.175 27 C -0.130 4.130 28 C -0.137 4.137 29 H 0.050 0.950 30 H 0.095 0.905 31 H 0.048 0.952 32 H 0.056 0.944 33 H 0.055 0.945 34 H 0.135 0.865 35 H 0.089 0.911 36 H 0.079 0.921 37 H 0.098 0.902 38 H 0.107 0.893 39 H 0.090 0.910 40 H 0.087 0.913 41 H 0.087 0.913 42 H 0.085 0.915 43 H 0.235 0.765 44 H 0.097 0.903 45 H 0.098 0.902 46 H 0.124 0.876 47 H 0.121 0.879 48 H 0.093 0.907 49 H 0.092 0.908 50 H 0.089 0.911 51 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -0.429 7.791 -15.662 17.498 hybrid contribution -0.516 -0.224 0.413 0.697 sum -0.944 7.567 -15.249 17.050 Atomic orbital electron populations 1.22647 0.83581 1.01718 0.98755 1.88167 1.17211 1.27609 1.94990 1.23020 0.96582 0.84334 0.98340 1.21527 0.89224 0.99251 0.91670 1.43342 1.55749 1.06335 1.09100 1.19262 1.45643 0.80572 0.99814 0.89464 1.25214 0.94355 0.99861 0.95995 1.69815 1.30595 1.36838 1.12942 0.86125 0.79197 0.82809 0.77624 1.20684 1.20933 1.19284 1.20346 0.80513 0.86689 0.86933 1.90499 1.59069 1.14749 1.86000 1.21216 1.03449 0.97912 0.92936 1.21502 1.02716 0.98552 0.92160 1.21491 1.01654 0.90233 0.87303 1.46110 1.71110 1.10777 1.09794 1.20595 0.76266 0.90114 0.83021 1.90702 1.50969 1.19827 1.80362 1.21410 1.00427 0.96094 0.94991 0.88371 1.20425 0.97467 0.96752 0.97363 1.21991 1.01054 0.99733 0.94358 1.22096 0.99847 0.98911 0.96604 1.20511 0.99620 0.94194 0.98670 1.21423 1.03125 0.97137 0.92062 0.95047 0.90463 0.95213 0.94365 0.94498 0.86492 0.91064 0.92100 0.90227 0.89285 0.90979 0.91342 0.91341 0.91522 0.76534 0.90303 0.90183 0.87574 0.87914 0.90700 0.90775 0.91070 0.90629 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.48 11.01 101.05 1.11 1.60 16 2 O -0.36 -7.71 10.18 -35.23 -0.36 -8.07 16 3 C 0.05 1.14 6.28 37.16 0.23 1.37 16 4 C 0.11 2.55 5.47 -4.05 -0.02 2.53 16 5 N -0.43 -10.61 2.52 -114.81 -0.29 -10.90 16 6 C -0.33 -8.20 8.23 -14.93 -0.12 -8.32 16 7 H 0.09 2.12 6.95 -52.49 -0.37 1.75 16 8 C 0.05 1.30 4.95 -17.47 -0.09 1.21 16 9 N -0.86 -22.90 11.34 55.50 0.63 -22.27 16 10 Si 0.92 20.14 29.61 -169.99 -5.03 15.11 16 11 H -0.28 -6.08 7.11 56.52 0.40 -5.68 16 12 H -0.28 -6.28 7.11 56.52 0.40 -5.87 16 13 H -0.27 -5.89 7.11 56.52 0.40 -5.49 16 14 C 0.47 10.93 7.62 -10.99 -0.08 10.85 16 15 O -0.62 -15.47 15.54 5.55 0.09 -15.38 16 16 C -0.11 -2.16 4.33 -27.88 -0.12 -2.28 16 17 C -0.11 -1.72 4.62 -26.73 -0.12 -1.84 16 18 C 0.12 1.61 5.67 -4.04 -0.02 1.58 16 19 N -0.73 -8.51 5.47 -60.29 -0.33 -8.84 16 20 C 0.51 6.48 7.13 -10.99 -0.08 6.40 16 21 O -0.54 -8.99 15.91 5.56 0.09 -8.90 16 22 C -0.11 -1.00 2.58 -91.56 -0.24 -1.23 16 23 H 0.10 0.78 8.13 -51.93 -0.42 0.36 16 24 C -0.08 -0.67 5.29 -28.18 -0.15 -0.82 16 25 C -0.15 -1.15 9.80 -35.90 -0.35 -1.50 16 26 C -0.16 -1.13 9.80 -35.90 -0.35 -1.48 16 27 C -0.09 -0.67 6.12 -28.17 -0.17 -0.84 16 28 C -0.10 -0.92 4.69 -26.51 -0.12 -1.05 16 29 H 0.03 0.47 8.14 -51.93 -0.42 0.04 16 30 H 0.08 1.12 8.14 -51.93 -0.42 0.69 16 31 H 0.03 0.41 8.14 -51.93 -0.42 -0.01 16 32 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 33 H 0.04 0.77 8.14 -51.93 -0.42 0.35 16 34 H 0.12 3.01 5.37 -51.92 -0.28 2.73 16 35 H 0.07 1.70 7.36 -51.93 -0.38 1.32 16 36 H 0.27 6.75 8.32 -40.82 -0.34 6.42 16 37 H 0.08 1.44 7.68 -51.93 -0.40 1.04 16 38 H 0.09 1.69 8.10 -51.93 -0.42 1.26 16 39 H 0.07 1.16 8.08 -51.93 -0.42 0.74 16 40 H 0.07 1.07 8.12 -51.93 -0.42 0.65 16 41 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 42 H 0.07 0.96 8.14 -51.93 -0.42 0.53 16 43 H 0.40 3.74 8.22 -40.82 -0.34 3.40 16 44 H 0.08 0.54 7.95 -51.93 -0.41 0.13 16 45 H 0.08 0.72 8.10 -51.93 -0.42 0.30 16 46 H 0.11 0.68 8.06 -52.49 -0.42 0.25 16 47 H 0.10 0.62 8.06 -52.48 -0.42 0.19 16 48 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 49 H 0.07 0.48 8.14 -51.93 -0.42 0.05 16 50 H 0.07 0.74 8.12 -51.93 -0.42 0.31 16 51 H 0.08 0.76 7.91 -51.93 -0.41 0.35 16 LS Contribution 413.28 15.07 6.23 6.23 Total: -1.00 -31.56 413.28 -8.58 -40.14 By element: Atomic # 1 Polarization: 15.60 SS G_CDS: -8.90 Total: 6.71 kcal Atomic # 6 Polarization: 6.88 SS G_CDS: -0.70 Total: 6.18 kcal Atomic # 7 Polarization: -42.01 SS G_CDS: 0.01 Total: -42.00 kcal Atomic # 8 Polarization: -32.17 SS G_CDS: -0.18 Total: -32.36 kcal Atomic # 14 Polarization: 20.14 SS G_CDS: -5.03 Total: 15.11 kcal Total LS contribution 6.23 Total: 6.23 kcal Total: -31.56 -8.58 -40.14 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000457204605.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -78.160 kcal (2) G-P(sol) polarization free energy of solvation -31.561 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.721 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.576 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.136 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.296 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.55 seconds