Wall clock time and date at job start Tue Mar 31 2020 21:45:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42907 * 113.99487 * 2 1 4 4 C 1.53002 * 109.46771 * 180.02562 * 3 2 1 5 5 N 1.46491 * 109.47603 * 65.00088 * 4 3 2 6 6 C 1.37099 * 120.00471 * 270.00369 * 5 4 3 7 7 H 1.07991 * 120.00646 * 145.14074 * 6 5 4 8 8 C 1.38954 * 119.99434 * 325.14562 * 6 5 4 9 9 N 1.31413 * 119.99955 * 337.42298 * 8 6 5 10 10 Si 1.86799 * 120.00004 * 157.42719 * 8 6 5 11 11 H 1.48503 * 109.46967 * 89.99722 * 10 8 6 12 12 H 1.48497 * 109.47255 * 209.99254 * 10 8 6 13 13 H 1.48498 * 109.47027 * 329.99879 * 10 8 6 14 14 C 1.34778 * 120.00200 * 89.99549 * 5 4 3 15 15 O 1.21294 * 119.99404 * 4.90612 * 14 5 4 16 16 C 1.50697 * 120.00120 * 184.90423 * 14 5 4 17 17 C 1.53005 * 109.46719 * 177.66184 * 16 14 5 18 18 C 1.53002 * 109.46780 * 179.97438 * 17 16 14 19 19 N 1.46502 * 109.47083 * 179.97438 * 18 17 16 20 20 C 1.34779 * 120.00250 * 179.97438 * 19 18 17 21 21 O 1.21281 * 119.99691 * 0.02562 * 20 19 18 22 22 C 1.50695 * 120.00217 * 180.02562 * 20 19 18 23 23 H 1.09001 * 109.63764 * 300.42035 * 22 20 19 24 24 C 1.53023 * 109.64347 * 61.05449 * 22 20 19 25 25 C 1.50068 * 110.14742 * 169.12061 * 24 22 20 26 26 C 1.29440 * 124.07655 * 342.87101 * 25 24 22 27 27 C 1.50073 * 124.07472 * 0.46898 * 26 25 24 28 28 C 1.53025 * 110.14850 * 342.86728 * 27 26 25 29 29 H 1.09003 * 109.47428 * 59.99879 * 1 2 3 30 30 H 1.09001 * 109.47033 * 179.97438 * 1 2 3 31 31 H 1.09004 * 109.47455 * 299.99549 * 1 2 3 32 32 H 1.09002 * 109.47199 * 60.00201 * 3 2 1 33 33 H 1.08996 * 109.47665 * 299.99784 * 3 2 1 34 34 H 1.09011 * 109.46982 * 304.99709 * 4 3 2 35 35 H 1.09001 * 109.47042 * 185.00840 * 4 3 2 36 36 H 0.97002 * 119.99620 * 185.02621 * 9 8 6 37 37 H 1.08994 * 109.47234 * 57.66437 * 16 14 5 38 38 H 1.08997 * 109.47086 * 297.65650 * 16 14 5 39 39 H 1.09002 * 109.47301 * 60.00265 * 17 16 14 40 40 H 1.08994 * 109.47351 * 299.99837 * 17 16 14 41 41 H 1.08999 * 109.47514 * 300.00104 * 18 17 16 42 42 H 1.09002 * 109.46980 * 60.00077 * 18 17 16 43 43 H 0.97000 * 120.00078 * 0.02562 * 19 18 17 44 44 H 1.08993 * 109.36103 * 289.33051 * 24 22 20 45 45 H 1.09004 * 109.35570 * 48.91760 * 24 22 20 46 46 H 1.08000 * 117.96452 * 162.84999 * 25 24 22 47 47 H 1.08003 * 117.96397 * 180.48922 * 26 25 24 48 48 H 1.08997 * 109.35859 * 222.65841 * 27 26 25 49 49 H 1.09006 * 109.24756 * 103.00610 * 27 26 25 50 50 H 1.08998 * 109.64025 * 289.75619 * 28 27 26 51 51 H 1.08996 * 109.64114 * 169.11597 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3056 0.0000 4 6 3.5354 1.1848 -0.0006 5 7 3.9757 0.5646 -1.2526 6 6 4.0969 -0.7984 -1.3370 7 1 3.8635 -1.3051 -2.2616 8 6 4.5202 -1.5278 -0.2327 9 7 5.2127 -0.9399 0.7170 10 14 4.1049 -3.3441 -0.0980 11 1 5.1830 -4.1465 -0.7298 12 1 3.9830 -3.7192 1.3336 13 1 2.8187 -3.6104 -0.7908 14 6 4.2615 1.3340 -2.3217 15 8 4.2403 2.5426 -2.2221 16 6 4.6072 0.6925 -3.6408 17 6 4.8293 1.7800 -4.6940 18 6 5.1810 1.1288 -6.0331 19 7 5.3930 2.1700 -7.0417 20 6 5.7159 1.8287 -8.3050 21 8 5.8304 0.6597 -8.6068 22 6 5.9345 2.8997 -9.3423 23 1 5.0283 3.4958 -9.4500 24 6 7.0985 3.7976 -8.9173 25 6 7.4990 4.6959 -10.0507 26 6 7.1676 4.4966 -11.2860 27 6 6.3283 3.3448 -11.7560 28 6 6.2879 2.2510 -10.6866 29 1 -0.3634 0.5139 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5138 0.8900 32 1 1.6885 1.8465 0.8900 33 1 1.6885 1.8465 -0.8899 34 1 3.8514 0.5683 0.8410 35 1 3.9784 2.1767 0.0891 36 1 5.5704 -1.4633 1.4512 37 1 3.7894 0.0441 -3.9550 38 1 5.5170 0.1025 -3.5305 39 1 5.6472 2.4285 -4.3798 40 1 3.9196 2.3701 -4.8043 41 1 6.0908 0.5389 -5.9225 42 1 4.3634 0.4800 -6.3474 43 1 5.3017 3.1050 -6.8002 44 1 6.7939 4.4050 -8.0651 45 1 7.9476 3.1769 -8.6309 46 1 8.1008 5.5629 -9.8214 47 1 7.5173 5.2030 -12.0244 48 1 6.7542 2.9379 -12.6731 49 1 5.3150 3.6953 -11.9528 50 1 7.2640 1.7710 -10.6165 51 1 5.5304 1.5118 -10.9471 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000457204605.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:45:13 Heat of formation + Delta-G solvation = -137.412380 kcal Electronic energy + Delta-G solvation = -29262.464392 eV Core-core repulsion = 25160.854964 eV Total energy + Delta-G solvation = -4101.609428 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.204 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -41.21777 -40.53779 -38.70796 -38.53457 -36.82016 -36.36039 -33.78018 -33.47179 -32.18644 -31.65624 -30.92361 -27.94049 -27.23732 -26.40506 -24.88822 -24.03430 -23.36740 -22.44738 -21.23493 -20.77171 -18.85977 -18.65664 -18.31271 -17.82823 -17.19971 -17.07190 -16.91343 -16.76876 -16.37382 -16.14341 -16.03528 -15.70943 -15.54172 -15.09218 -14.76730 -14.65630 -14.39613 -14.15293 -13.95218 -13.59007 -13.51167 -13.25450 -13.18553 -13.08852 -12.96926 -12.85302 -12.68251 -12.57406 -12.45887 -12.23864 -12.07382 -11.97849 -11.79484 -11.72974 -11.70166 -11.31064 -11.00314 -10.72862 -10.51722 -10.27952 -10.09698 -9.85890 -9.39498 -8.22988 -5.90696 1.43183 1.43509 1.51143 1.61812 1.62064 2.05670 2.16722 2.39157 2.97753 3.04641 3.24507 3.57930 3.72670 3.86355 3.96845 4.08214 4.22003 4.25889 4.26546 4.29908 4.37384 4.41910 4.48323 4.53028 4.55073 4.60712 4.63252 4.64200 4.67948 4.74068 4.74634 4.81844 4.86713 4.92872 5.00366 5.05721 5.07016 5.23288 5.26298 5.31743 5.34345 5.39696 5.46203 5.60622 5.78839 6.06010 6.07780 6.43697 6.47829 6.55326 7.22117 7.23983 7.66604 8.07422 8.80726 Molecular weight = 338.20amu Principal moments of inertia in cm(-1) A = 0.016981 B = 0.002045 C = 0.001965 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1648.486353 B =13686.521554 C =14242.741996 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.395 6.395 3 C 0.067 3.933 4 C 0.104 3.896 5 N -0.442 5.442 6 C -0.333 4.333 7 H 0.094 0.906 8 C 0.011 3.989 9 N -0.895 5.895 10 Si 0.975 3.025 11 H -0.274 1.274 12 H -0.286 1.286 13 H -0.265 1.265 14 C 0.454 3.546 15 O -0.637 6.637 16 C -0.109 4.109 17 C -0.093 4.093 18 C 0.127 3.873 19 N -0.717 5.717 20 C 0.513 3.487 21 O -0.586 6.586 22 C -0.100 4.100 23 H 0.118 0.882 24 C -0.081 4.081 25 C -0.162 4.162 26 C -0.158 4.158 27 C -0.090 4.090 28 C -0.100 4.100 29 H 0.041 0.959 30 H 0.091 0.909 31 H 0.051 0.949 32 H 0.065 0.935 33 H 0.032 0.968 34 H 0.097 0.903 35 H 0.059 0.941 36 H 0.269 0.731 37 H 0.089 0.911 38 H 0.087 0.913 39 H 0.067 0.933 40 H 0.070 0.930 41 H 0.060 0.940 42 H 0.063 0.937 43 H 0.414 0.586 44 H 0.093 0.907 45 H 0.067 0.933 46 H 0.119 0.881 47 H 0.118 0.882 48 H 0.084 0.916 49 H 0.086 0.914 50 H 0.054 0.946 51 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.575 8.845 -17.006 19.233 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.314 6.314 3 C -0.011 4.011 4 C -0.020 4.020 5 N -0.159 5.159 6 C -0.460 4.460 7 H 0.111 0.889 8 C -0.191 4.191 9 N -0.534 5.534 10 Si 0.800 3.200 11 H -0.199 1.199 12 H -0.212 1.212 13 H -0.190 1.190 14 C 0.245 3.755 15 O -0.526 6.526 16 C -0.149 4.149 17 C -0.132 4.132 18 C 0.003 3.997 19 N -0.369 5.369 20 C 0.300 3.700 21 O -0.466 6.466 22 C -0.121 4.121 23 H 0.136 0.864 24 C -0.119 4.119 25 C -0.180 4.180 26 C -0.176 4.176 27 C -0.127 4.127 28 C -0.138 4.138 29 H 0.059 0.941 30 H 0.110 0.890 31 H 0.069 0.931 32 H 0.083 0.917 33 H 0.050 0.950 34 H 0.115 0.885 35 H 0.078 0.922 36 H 0.079 0.921 37 H 0.107 0.893 38 H 0.105 0.895 39 H 0.086 0.914 40 H 0.089 0.911 41 H 0.078 0.922 42 H 0.082 0.918 43 H 0.251 0.749 44 H 0.112 0.888 45 H 0.085 0.915 46 H 0.137 0.863 47 H 0.136 0.864 48 H 0.102 0.898 49 H 0.104 0.896 50 H 0.073 0.927 51 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -1.374 8.375 -16.907 18.917 hybrid contribution -0.247 -0.362 0.818 0.928 sum -1.621 8.012 -16.089 18.046 Atomic orbital electron populations 1.22884 0.80816 1.03226 1.00269 1.88094 1.20279 1.27738 1.95278 1.22794 0.94358 0.84620 0.99306 1.21472 0.91643 0.97968 0.90958 1.43583 1.56097 1.06544 1.09649 1.19497 1.45436 0.80911 1.00203 0.88880 1.25934 0.94077 1.03447 0.95665 1.69918 1.31672 1.38215 1.13567 0.85213 0.79038 0.78493 0.77277 1.19931 1.21182 1.18968 1.21104 0.79750 0.86611 0.88083 1.90470 1.59845 1.15677 1.86593 1.21196 1.03500 0.98733 0.91455 1.21304 1.02600 0.97369 0.91906 1.21225 1.01107 0.90468 0.86898 1.45999 1.70524 1.11128 1.09267 1.21212 0.75064 0.90241 0.83452 1.90682 1.52944 1.21870 1.81085 1.21424 1.01845 0.95241 0.93635 0.86391 1.20427 0.96437 0.96617 0.98373 1.22072 1.01641 1.00111 0.94181 1.22268 0.99506 0.98953 0.96910 1.20513 1.00529 0.93502 0.98130 1.21403 1.01752 0.97673 0.93000 0.94077 0.89041 0.93064 0.91741 0.94964 0.88528 0.92230 0.92098 0.89285 0.89504 0.91448 0.91132 0.92165 0.91831 0.74910 0.88846 0.91457 0.86327 0.86376 0.89783 0.89608 0.92726 0.91865 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.73 11.01 113.37 1.25 1.98 16 2 O -0.39 -16.44 10.18 -148.98 -1.52 -17.96 16 3 C 0.07 2.73 6.28 71.98 0.45 3.18 16 4 C 0.10 5.01 5.47 86.38 0.47 5.48 16 5 N -0.44 -22.10 2.52 -635.54 -1.60 -23.71 16 6 C -0.33 -16.79 8.23 84.04 0.69 -16.10 16 7 H 0.09 4.48 6.95 -2.92 -0.02 4.46 16 8 C 0.01 0.57 4.95 84.93 0.42 0.99 16 9 N -0.90 -48.07 11.34 21.66 0.25 -47.82 16 10 Si 0.97 41.08 29.61 68.60 2.03 43.11 16 11 H -0.27 -11.14 7.11 99.48 0.71 -10.44 16 12 H -0.29 -12.07 7.11 99.48 0.71 -11.36 16 13 H -0.27 -10.96 7.11 99.48 0.71 -10.25 16 14 C 0.45 21.42 7.62 87.66 0.67 22.09 16 15 O -0.64 -32.20 15.54 -3.07 -0.05 -32.25 16 16 C -0.11 -4.05 4.33 29.85 0.13 -3.93 16 17 C -0.09 -2.82 4.62 30.60 0.14 -2.68 16 18 C 0.13 3.41 5.67 86.38 0.49 3.90 16 19 N -0.72 -16.00 5.47 -463.05 -2.53 -18.54 16 20 C 0.51 12.60 7.13 87.66 0.62 13.23 16 21 O -0.59 -19.62 15.91 -3.03 -0.05 -19.67 16 22 C -0.10 -1.72 2.58 -11.40 -0.03 -1.75 16 23 H 0.12 1.59 8.13 -2.39 -0.02 1.57 16 24 C -0.08 -1.18 5.29 29.66 0.16 -1.03 16 25 C -0.16 -2.08 9.80 27.04 0.27 -1.81 16 26 C -0.16 -1.92 9.80 27.04 0.27 -1.65 16 27 C -0.09 -1.12 6.12 29.66 0.18 -0.94 16 28 C -0.10 -1.80 4.69 30.74 0.14 -1.66 16 29 H 0.04 1.13 8.14 -2.39 -0.02 1.11 16 30 H 0.09 2.44 8.14 -2.39 -0.02 2.42 16 31 H 0.05 1.30 8.14 -2.39 -0.02 1.28 16 32 H 0.06 2.25 8.14 -2.39 -0.02 2.23 16 33 H 0.03 1.33 8.14 -2.39 -0.02 1.31 16 34 H 0.10 5.09 5.37 -2.38 -0.01 5.08 16 35 H 0.06 2.93 7.36 -2.39 -0.02 2.91 16 36 H 0.27 13.73 8.32 -92.71 -0.77 12.95 16 37 H 0.09 3.15 7.68 -2.39 -0.02 3.13 16 38 H 0.09 3.29 8.10 -2.39 -0.02 3.27 16 39 H 0.07 2.11 8.08 -2.39 -0.02 2.09 16 40 H 0.07 2.12 8.12 -2.39 -0.02 2.10 16 41 H 0.06 1.74 8.14 -2.39 -0.02 1.72 16 42 H 0.06 1.78 8.14 -2.39 -0.02 1.76 16 43 H 0.41 6.99 8.22 -92.71 -0.76 6.23 16 44 H 0.09 1.07 7.95 -2.39 -0.02 1.05 16 45 H 0.07 1.16 8.10 -2.38 -0.02 1.14 16 46 H 0.12 1.23 8.06 -2.91 -0.02 1.20 16 47 H 0.12 1.09 8.06 -2.91 -0.02 1.06 16 48 H 0.08 0.91 8.14 -2.39 -0.02 0.89 16 49 H 0.09 0.90 8.14 -2.38 -0.02 0.88 16 50 H 0.05 1.14 8.12 -2.39 -0.02 1.12 16 51 H 0.06 1.28 7.91 -2.39 -0.02 1.26 16 Total: -1.00 -68.36 413.28 3.00 -65.36 By element: Atomic # 1 Polarization: 32.03 SS G_CDS: 0.14 Total: 32.18 kcal Atomic # 6 Polarization: 12.97 SS G_CDS: 6.32 Total: 19.29 kcal Atomic # 7 Polarization: -86.18 SS G_CDS: -3.89 Total: -90.07 kcal Atomic # 8 Polarization: -68.27 SS G_CDS: -1.61 Total: -69.88 kcal Atomic # 14 Polarization: 41.08 SS G_CDS: 2.03 Total: 43.11 kcal Total: -68.36 3.00 -65.36 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000457204605.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -72.049 kcal (2) G-P(sol) polarization free energy of solvation -68.359 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -140.408 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.995 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.364 kcal (6) G-S(sol) free energy of system = (1) + (5) -137.412 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds