Wall clock time and date at job start Tue Mar 31 2020 20:49:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 O 1.45199 * 109.47166 * 2 1 4 4 C 1.34232 * 117.00120 * 179.97438 * 3 2 1 5 5 O 1.20823 * 119.99812 * 0.02562 * 4 3 2 6 6 C 1.50697 * 120.00128 * 179.97438 * 4 3 2 7 7 H 1.09006 * 109.49848 * 60.05801 * 6 4 3 8 8 C 1.53034 * 109.49839 * 180.16134 * 6 4 3 9 9 C 1.53362 * 109.60796 * 181.32504 * 8 6 4 10 10 C 1.53195 * 109.14628 * 298.71186 * 9 8 6 11 11 N 1.46933 * 108.89133 * 54.58033 * 10 9 8 12 12 C 1.34774 * 120.63005 * 126.34132 * 11 10 9 13 13 O 1.21590 * 120.00147 * 354.76502 * 12 11 10 14 14 N 1.34779 * 119.99916 * 174.76572 * 12 11 10 15 15 C 1.46494 * 119.99736 * 184.98018 * 14 12 11 16 16 H 1.09001 * 110.02387 * 325.70080 * 15 14 12 17 17 C 1.53876 * 110.03286 * 87.09879 * 15 14 12 18 18 C 1.54263 * 106.60269 * 119.28227 * 17 15 14 19 19 C 1.54893 * 104.19404 * 23.61054 * 18 17 15 20 20 H 1.08991 * 110.75726 * 80.37383 * 19 18 17 21 21 C 1.50705 * 110.75481 * 203.56209 * 19 18 17 22 22 H 1.07990 * 120.00091 * 118.54507 * 21 19 18 23 23 C 1.37876 * 119.99857 * 298.54491 * 21 19 18 24 24 N 1.31521 * 119.99957 * 359.97438 * 23 21 19 25 25 Si 1.86796 * 120.00122 * 179.97438 * 23 21 19 26 26 H 1.48497 * 109.47191 * 90.00069 * 25 23 21 27 27 H 1.48506 * 109.47162 * 210.00076 * 25 23 21 28 28 H 1.48501 * 109.47140 * 330.00055 * 25 23 21 29 29 C 1.54272 * 110.03187 * 204.31046 * 15 14 12 30 30 C 1.46923 * 118.73729 * 306.31345 * 11 10 9 31 31 H 1.08994 * 109.47181 * 299.99909 * 1 2 3 32 32 H 1.09002 * 109.46733 * 60.00579 * 1 2 3 33 33 H 1.08997 * 109.46881 * 179.97438 * 1 2 3 34 34 H 1.09006 * 109.47495 * 239.99826 * 2 1 3 35 35 H 1.09005 * 109.47217 * 120.00000 * 2 1 3 36 36 H 1.08998 * 109.46070 * 301.33758 * 8 6 4 37 37 H 1.09002 * 109.45855 * 61.31172 * 8 6 4 38 38 H 1.08997 * 109.68206 * 178.75191 * 9 8 6 39 39 H 1.09000 * 109.47293 * 58.54866 * 9 8 6 40 40 H 1.08997 * 109.58847 * 294.71834 * 10 9 8 41 41 H 1.09001 * 109.58102 * 174.43245 * 10 9 8 42 42 H 0.96991 * 119.99992 * 4.98656 * 14 12 11 43 43 H 1.09001 * 110.02787 * 238.56882 * 17 15 14 44 44 H 1.08993 * 110.03003 * 359.97438 * 17 15 14 45 45 H 1.08992 * 110.49025 * 142.28746 * 18 17 15 46 46 H 1.08996 * 110.48526 * 264.93196 * 18 17 15 47 47 H 0.96999 * 119.99888 * 180.02562 * 24 23 21 48 48 H 1.09002 * 110.48724 * 335.78977 * 29 15 14 49 49 H 1.09006 * 110.48108 * 98.42976 * 29 15 14 50 50 H 1.08997 * 109.58623 * 173.40164 * 30 11 10 51 51 H 1.09002 * 109.58945 * 293.68110 * 30 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3689 0.0000 4 6 3.3448 1.5448 0.0005 5 8 4.0808 0.5866 0.0005 6 6 3.9208 2.9374 0.0000 7 1 3.5855 3.4702 0.8899 8 6 5.4491 2.8580 -0.0033 9 6 6.0380 4.2736 0.0295 10 6 5.5879 5.0343 -1.2217 11 7 4.1214 4.9907 -1.3031 12 6 3.4063 6.1267 -1.4235 13 8 3.9650 7.2054 -1.3702 14 7 2.0719 6.0672 -1.6031 15 6 1.3097 7.2950 -1.8430 16 1 1.7493 8.1222 -1.2856 17 6 1.2953 7.6212 -3.3467 18 6 -0.1833 7.6080 -3.7865 19 6 -0.9703 7.8831 -2.4810 20 1 -0.9749 8.9482 -2.2499 21 6 -2.3779 7.3549 -2.5847 22 1 -2.7182 6.5876 -1.9053 23 6 -3.2314 7.8515 -3.5471 24 7 -2.8171 8.7864 -4.3742 25 14 -4.9759 7.1964 -3.6761 26 1 -5.8742 8.0076 -2.8157 27 1 -5.4331 7.2802 -5.0866 28 1 -5.0075 5.7808 -3.2288 29 6 -0.1605 7.0954 -1.4203 30 6 3.4495 3.6851 -1.2513 31 1 -0.3633 0.5138 0.8899 32 1 -0.3633 0.5138 -0.8901 33 1 -0.3633 -1.0277 -0.0005 34 1 1.8934 -0.5139 -0.8900 35 1 1.8934 -0.5139 0.8900 36 1 5.7858 2.3050 0.8735 37 1 5.7842 2.3469 -0.9059 38 1 7.1264 4.2181 0.0496 39 1 5.6833 4.7942 0.9191 40 1 6.0171 4.5666 -2.1078 41 1 5.9197 6.0706 -1.1584 42 1 1.6163 5.2115 -1.5734 43 1 1.7273 8.6070 -3.5190 44 1 1.8558 6.8662 -3.8978 45 1 -0.3708 8.3942 -4.5177 46 1 -0.4510 6.6337 -4.1953 47 1 -3.4176 9.1360 -5.0510 48 1 -0.4248 6.0382 -1.4464 49 1 -0.3308 7.5077 -0.4257 50 1 2.3704 3.8312 -1.2050 51 1 3.7024 3.1085 -2.1411 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000459013394.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:49:11 Heat of formation + Delta-G solvation = -130.763619 kcal Electronic energy + Delta-G solvation = -30458.832157 eV Core-core repulsion = 26357.511041 eV Total energy + Delta-G solvation = -4101.321116 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.204 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.16466 -40.18312 -38.08715 -37.08475 -36.56067 -33.89341 -33.00645 -32.43517 -31.76240 -31.20136 -28.13617 -27.12681 -25.42875 -25.18369 -23.85349 -23.24961 -21.98733 -20.72357 -19.90251 -19.68220 -18.94435 -18.17493 -17.84845 -17.03723 -16.58705 -16.55626 -15.89081 -15.46162 -15.03030 -14.67717 -14.62238 -14.36718 -14.23750 -13.99779 -13.88036 -13.60657 -13.17977 -13.08894 -12.94579 -12.56134 -12.30529 -12.26460 -11.97780 -11.86192 -11.75328 -11.41826 -11.32037 -11.08498 -11.02807 -10.98238 -10.89597 -10.85379 -10.70993 -10.58130 -10.28289 -9.95164 -9.79789 -9.49641 -9.21139 -8.91411 -8.78547 -8.43651 -8.34732 -6.00183 -4.03692 1.81120 2.25452 2.70229 3.30025 3.33294 3.37212 3.39196 3.95508 4.12660 4.32337 4.37397 4.43845 4.61215 4.65176 4.67119 4.80497 4.83560 4.93843 5.07423 5.16317 5.31990 5.35512 5.36736 5.45754 5.48477 5.53709 5.56705 5.62123 5.71142 5.71695 5.78076 5.86996 5.95741 6.12195 6.31148 6.37332 6.39413 6.60960 6.69991 6.76130 6.91861 6.97456 7.00521 7.29901 7.38594 7.39449 7.73481 7.90020 8.03823 8.11002 8.43537 8.76525 8.98427 9.60379 11.08864 Molecular weight = 338.20amu Principal moments of inertia in cm(-1) A = 0.010182 B = 0.003130 C = 0.002463 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2749.179385 B = 8943.266543 C =11365.217383 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.062 3.938 3 O -0.354 6.354 4 C 0.470 3.530 5 O -0.505 6.505 6 C -0.096 4.096 7 H 0.115 0.885 8 C -0.102 4.102 9 C -0.134 4.134 10 C 0.125 3.875 11 N -0.633 5.633 12 C 0.707 3.293 13 O -0.589 6.589 14 N -0.733 5.733 15 C 0.154 3.846 16 H 0.081 0.919 17 C -0.136 4.136 18 C -0.100 4.100 19 C 0.052 3.948 20 H 0.032 0.968 21 C -0.514 4.514 22 H 0.055 0.945 23 C 0.063 3.937 24 N -0.888 5.888 25 Si 0.889 3.111 26 H -0.281 1.281 27 H -0.287 1.287 28 H -0.275 1.275 29 C -0.121 4.121 30 C 0.124 3.876 31 H 0.068 0.932 32 H 0.071 0.929 33 H 0.079 0.921 34 H 0.070 0.930 35 H 0.069 0.931 36 H 0.075 0.925 37 H 0.075 0.925 38 H 0.082 0.918 39 H 0.070 0.930 40 H 0.065 0.935 41 H 0.098 0.902 42 H 0.392 0.608 43 H 0.055 0.945 44 H 0.048 0.952 45 H 0.069 0.931 46 H 0.045 0.955 47 H 0.259 0.741 48 H 0.060 0.940 49 H 0.053 0.947 50 H 0.093 0.907 51 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.205 -15.887 8.480 22.937 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.011 4.011 3 O -0.271 6.271 4 C 0.312 3.688 5 O -0.393 6.393 6 C -0.116 4.116 7 H 0.133 0.867 8 C -0.140 4.140 9 C -0.172 4.172 10 C 0.002 3.998 11 N -0.371 5.371 12 C 0.409 3.591 13 O -0.467 6.467 14 N -0.388 5.388 15 C 0.050 3.950 16 H 0.099 0.901 17 C -0.174 4.174 18 C -0.138 4.138 19 C 0.033 3.967 20 H 0.050 0.950 21 C -0.552 4.552 22 H 0.073 0.927 23 C -0.139 4.139 24 N -0.526 5.526 25 Si 0.717 3.283 26 H -0.208 1.208 27 H -0.213 1.213 28 H -0.200 1.200 29 C -0.159 4.159 30 C 0.000 4.000 31 H 0.087 0.913 32 H 0.090 0.910 33 H 0.098 0.902 34 H 0.089 0.911 35 H 0.087 0.913 36 H 0.094 0.906 37 H 0.093 0.907 38 H 0.101 0.899 39 H 0.089 0.911 40 H 0.083 0.917 41 H 0.116 0.884 42 H 0.229 0.771 43 H 0.074 0.926 44 H 0.067 0.933 45 H 0.087 0.913 46 H 0.064 0.936 47 H 0.069 0.931 48 H 0.078 0.922 49 H 0.072 0.928 50 H 0.111 0.889 51 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 14.725 -15.258 8.332 22.783 hybrid contribution -1.223 -1.105 -0.113 1.652 sum 13.503 -16.363 8.219 22.751 Atomic orbital electron populations 1.21833 0.92220 1.03103 1.04089 1.23077 0.95708 0.79803 1.02520 1.86542 1.24175 1.32778 1.83582 1.23541 0.80761 0.92254 0.72240 1.90667 1.60522 1.42962 1.45102 1.21510 0.97668 0.89955 1.02469 0.86686 1.21485 0.90989 0.97568 1.03971 1.22017 1.01101 0.94967 0.99103 1.21487 0.78415 1.02758 0.97117 1.47236 1.06754 1.04362 1.78766 1.15897 0.82094 0.83497 0.77622 1.90894 1.70269 1.26843 1.58676 1.45746 1.05398 1.11320 1.76372 1.21775 0.91695 0.84936 0.96601 0.90109 1.22674 0.99893 1.00174 0.94701 1.22296 0.90015 1.00928 1.00549 1.19558 0.92864 0.95097 0.89180 0.94988 1.21088 0.96378 1.21688 1.16065 0.92668 1.24973 0.98233 0.94956 0.95738 1.69964 1.35662 1.27771 1.19228 0.86649 0.85173 0.79302 0.77158 1.20757 1.21334 1.19994 1.22768 0.91847 1.01208 1.00056 1.21435 0.98099 0.84633 0.95852 0.91268 0.91001 0.90191 0.91131 0.91281 0.90633 0.90655 0.89898 0.91076 0.91683 0.88385 0.77128 0.92607 0.93303 0.91257 0.93583 0.93084 0.92177 0.92831 0.88897 0.90729 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.02 10.29 37.16 0.38 -0.64 16 2 C 0.06 0.50 6.19 37.16 0.23 0.73 16 3 O -0.35 -3.45 10.15 -39.26 -0.40 -3.84 16 4 C 0.47 4.69 7.26 36.00 0.26 4.95 16 5 O -0.51 -6.12 15.73 -18.75 -0.29 -6.42 16 6 C -0.10 -0.81 2.78 -91.65 -0.25 -1.07 16 7 H 0.12 0.93 8.14 -51.93 -0.42 0.51 16 8 C -0.10 -0.79 4.47 -26.53 -0.12 -0.91 16 9 C -0.13 -1.00 6.11 -26.44 -0.16 -1.16 16 10 C 0.13 1.23 6.43 -3.71 -0.02 1.20 16 11 N -0.63 -7.38 2.97 -178.49 -0.53 -7.91 16 12 C 0.71 11.06 8.29 -86.92 -0.72 10.34 16 13 O -0.59 -11.40 15.40 5.29 0.08 -11.32 16 14 N -0.73 -11.22 4.90 -57.58 -0.28 -11.50 16 15 C 0.15 2.80 3.27 -66.81 -0.22 2.58 16 16 H 0.08 1.57 7.52 -51.93 -0.39 1.17 16 17 C -0.14 -2.65 6.59 -25.61 -0.17 -2.82 16 18 C -0.10 -2.27 5.57 -25.07 -0.14 -2.41 16 19 C 0.05 1.24 2.81 -89.73 -0.25 0.99 16 20 H 0.03 0.84 8.14 -51.93 -0.42 0.42 16 21 C -0.51 -13.62 8.55 -34.44 -0.29 -13.91 16 22 H 0.06 1.43 7.78 -52.49 -0.41 1.02 16 23 C 0.06 1.70 5.33 -17.82 -0.10 1.61 16 24 N -0.89 -25.07 12.02 55.43 0.67 -24.40 16 25 Si 0.89 20.81 29.54 -169.99 -5.02 15.79 16 26 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 27 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 28 H -0.27 -6.31 7.11 56.52 0.40 -5.91 16 29 C -0.12 -2.35 5.96 -25.03 -0.15 -2.50 16 30 C 0.12 1.16 5.60 -3.71 -0.02 1.14 16 31 H 0.07 0.47 8.14 -51.93 -0.42 0.04 16 32 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 33 H 0.08 0.39 8.14 -51.93 -0.42 -0.04 16 34 H 0.07 0.55 8.13 -51.93 -0.42 0.12 16 35 H 0.07 0.52 8.13 -51.93 -0.42 0.10 16 36 H 0.07 0.58 8.07 -51.93 -0.42 0.16 16 37 H 0.07 0.60 8.13 -51.93 -0.42 0.18 16 38 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 39 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 40 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 41 H 0.10 1.13 6.99 -51.93 -0.36 0.76 16 42 H 0.39 5.17 5.84 -40.82 -0.24 4.93 16 43 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 44 H 0.05 0.91 7.92 -51.93 -0.41 0.50 16 45 H 0.07 1.74 7.37 -51.93 -0.38 1.36 16 46 H 0.05 1.08 8.04 -51.93 -0.42 0.66 16 47 H 0.26 7.02 8.31 -40.82 -0.34 6.68 16 48 H 0.06 1.12 7.64 -51.93 -0.40 0.73 16 49 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 50 H 0.09 0.86 5.65 -51.93 -0.29 0.56 16 51 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 LS Contribution 402.60 15.07 6.07 6.07 Total: -1.00 -31.77 402.60 -10.23 -42.00 By element: Atomic # 1 Polarization: 12.18 SS G_CDS: -8.77 Total: 3.40 kcal Atomic # 6 Polarization: -0.14 SS G_CDS: -1.74 Total: -1.88 kcal Atomic # 7 Polarization: -43.66 SS G_CDS: -0.15 Total: -43.81 kcal Atomic # 8 Polarization: -20.96 SS G_CDS: -0.61 Total: -21.58 kcal Atomic # 14 Polarization: 20.81 SS G_CDS: -5.02 Total: 15.79 kcal Total LS contribution 6.07 Total: 6.07 kcal Total: -31.77 -10.23 -42.00 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000459013394.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -88.760 kcal (2) G-P(sol) polarization free energy of solvation -31.774 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.534 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.230 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.004 kcal (6) G-S(sol) free energy of system = (1) + (5) -130.764 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds