Wall clock time and date at job start Tue Mar 31 2020 21:00:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 O 1.45204 * 109.47120 * 2 1 4 4 C 1.34631 * 116.99945 * 180.02562 * 3 2 1 5 5 O 1.21513 * 120.00425 * 359.97438 * 4 3 2 6 6 N 1.34782 * 119.99986 * 180.02562 * 4 3 2 7 7 C 1.46926 * 120.62931 * 0.02562 * 6 4 3 8 8 C 1.53190 * 108.77271 * 233.58842 * 7 6 4 9 9 C 1.53038 * 109.34230 * 305.38148 * 8 7 6 10 10 C 1.53035 * 109.53908 * 61.31543 * 9 8 7 11 11 H 1.09002 * 109.49955 * 58.65509 * 10 9 8 12 12 C 1.50700 * 109.49727 * 178.72004 * 10 9 8 13 13 O 1.21277 * 120.00275 * 23.46950 * 12 10 9 14 14 N 1.34782 * 119.99775 * 203.47164 * 12 10 9 15 15 C 1.46501 * 119.99754 * 183.59761 * 14 12 10 16 16 C 1.50702 * 109.46990 * 269.99515 * 15 14 12 17 17 H 1.07999 * 119.99851 * 0.02562 * 16 15 14 18 18 C 1.37879 * 119.99922 * 179.97438 * 16 15 14 19 19 N 1.31514 * 120.00054 * 0.02562 * 18 16 15 20 20 Si 1.86805 * 119.99755 * 180.02562 * 18 16 15 21 21 H 1.48502 * 109.46903 * 90.00229 * 20 18 16 22 22 H 1.48496 * 109.47108 * 210.00179 * 20 18 16 23 23 H 1.48504 * 109.47195 * 330.00339 * 20 18 16 24 24 C 1.46493 * 120.00095 * 3.59095 * 14 12 10 25 25 C 1.53002 * 109.47268 * 263.55575 * 24 14 12 26 26 C 1.53005 * 117.49786 * 243.28447 * 25 24 14 27 27 C 1.53004 * 117.49643 * 174.62804 * 25 24 14 28 28 C 1.46924 * 120.62911 * 179.97438 * 6 4 3 29 29 H 1.09003 * 109.46715 * 180.02562 * 1 2 3 30 30 H 1.09005 * 109.46473 * 299.99760 * 1 2 3 31 31 H 1.09000 * 109.47179 * 59.99770 * 1 2 3 32 32 H 1.09004 * 109.46985 * 240.00119 * 2 1 3 33 33 H 1.09000 * 109.47179 * 120.00230 * 2 1 3 34 34 H 1.09004 * 109.58844 * 353.37332 * 7 6 4 35 35 H 1.08994 * 109.58263 * 113.80072 * 7 6 4 36 36 H 1.09004 * 109.49768 * 65.31734 * 8 7 6 37 37 H 1.08999 * 109.49489 * 185.38182 * 8 7 6 38 38 H 1.09008 * 109.43090 * 301.31452 * 9 8 7 39 39 H 1.08990 * 109.49028 * 181.35896 * 9 8 7 40 40 H 1.09000 * 109.47178 * 29.99651 * 15 14 12 41 41 H 1.09005 * 109.47009 * 149.99822 * 15 14 12 42 42 H 0.97001 * 119.99761 * 179.97438 * 19 18 16 43 43 H 1.09003 * 109.47425 * 23.55762 * 24 14 12 44 44 H 1.09000 * 109.47055 * 143.55711 * 24 14 12 45 45 H 1.08994 * 115.55253 * 28.95682 * 25 24 14 46 46 H 1.08994 * 117.49645 * 0.02562 * 26 25 24 47 47 H 1.09000 * 117.49149 * 145.02289 * 26 25 24 48 48 H 1.09001 * 117.49653 * 214.97938 * 27 25 24 49 49 H 1.09000 * 117.50088 * 359.97438 * 27 25 24 50 50 H 1.09000 * 109.58788 * 6.61972 * 28 6 4 51 51 H 1.08997 * 109.58523 * 246.19950 * 28 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0141 1.3690 0.0000 4 6 3.3488 1.5454 -0.0005 5 8 4.0890 0.5818 -0.0005 6 7 3.8639 2.7909 0.0000 7 6 2.9818 3.9658 0.0016 8 6 3.3732 4.8779 -1.1653 9 6 4.8639 5.2110 -1.0703 10 6 5.6835 3.9223 -1.1676 11 1 5.4634 3.4214 -2.1103 12 6 7.1522 4.2544 -1.1055 13 8 7.5191 5.2865 -0.5850 14 7 8.0580 3.4044 -1.6286 15 6 9.4893 3.6884 -1.4988 16 6 9.9483 4.5054 -2.6790 17 1 9.2442 4.7854 -3.4485 18 6 11.2670 4.8962 -2.7759 19 7 12.1244 4.5556 -1.8385 20 14 11.8358 5.9095 -4.2385 21 1 11.6893 7.3541 -3.9268 22 1 13.2610 5.6072 -4.5259 23 1 11.0092 5.5729 -5.4254 24 6 7.6112 2.1965 -2.3267 25 6 7.6420 1.0091 -1.3622 26 6 8.5984 -0.1402 -1.6869 27 6 7.0896 -0.3255 -1.8670 28 6 5.3183 2.9993 -0.0001 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3632 0.5138 0.8901 31 1 -0.3633 0.5139 -0.8900 32 1 1.8934 -0.5138 -0.8900 33 1 1.8934 -0.5139 0.8900 34 1 1.9465 3.6457 -0.1162 35 1 3.0947 4.5061 0.9415 36 1 3.1742 4.3682 -2.1080 37 1 2.7907 5.7980 -1.1191 38 1 5.0664 5.6990 -0.1168 39 1 5.1398 5.8793 -1.8858 40 1 9.6672 4.2463 -0.5795 41 1 10.0444 2.7508 -1.4680 42 1 13.0521 4.8303 -1.9069 43 1 6.5943 2.3424 -2.6910 44 1 8.2738 1.9976 -3.1690 45 1 7.4867 1.2529 -0.3113 46 1 9.2059 -0.0502 -2.5874 47 1 9.0719 -0.6526 -0.8495 48 1 6.5712 -0.9598 -1.1479 49 1 6.7039 -0.3575 -2.8860 50 1 5.8248 2.0415 -0.1189 51 1 5.6212 3.4610 0.9397 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000491171020.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:00:21 Heat of formation + Delta-G solvation = -92.712742 kcal Electronic energy + Delta-G solvation = -31328.583147 eV Core-core repulsion = 27228.912041 eV Total energy + Delta-G solvation = -4099.671106 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.204 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -40.84412 -39.61842 -37.82156 -37.05478 -36.33054 -34.37129 -33.14383 -32.53651 -31.77411 -31.25320 -27.85957 -26.14078 -25.79078 -24.39459 -23.26300 -22.61382 -22.00104 -21.49978 -20.57722 -20.06682 -18.43757 -18.00058 -17.10073 -16.78822 -16.52664 -16.31398 -15.71018 -15.17751 -14.86417 -14.84046 -14.48753 -14.38282 -14.16994 -13.89642 -13.45003 -13.28916 -13.17457 -13.06216 -12.92715 -12.48234 -12.25626 -12.13307 -12.04947 -11.86847 -11.47668 -11.33793 -11.24052 -11.18403 -11.08302 -10.94557 -10.78945 -10.71011 -10.68935 -10.52803 -10.50110 -10.20651 -10.00250 -9.60123 -9.53971 -8.99750 -8.73897 -8.40699 -7.66194 -6.01765 -4.06009 1.95129 2.72671 3.32380 3.34474 3.38552 3.41681 3.65146 3.86783 4.16024 4.46143 4.65502 4.66155 4.72352 4.73787 4.83479 4.94706 5.01108 5.08528 5.13595 5.18113 5.19678 5.27526 5.33239 5.38956 5.40752 5.47248 5.59253 5.62475 5.65509 5.71362 5.76763 5.79454 5.81873 5.94118 5.98508 6.11741 6.18908 6.21332 6.22507 6.28945 6.38560 6.43846 6.59152 7.11954 7.21959 7.46498 7.56254 7.94574 8.18026 8.26421 8.42553 8.91563 9.08380 9.58619 11.06361 Molecular weight = 338.20amu Principal moments of inertia in cm(-1) A = 0.015671 B = 0.003237 C = 0.002833 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1786.278243 B = 8647.144463 C = 9879.910149 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.082 3.918 3 O -0.372 6.372 4 C 0.649 3.351 5 O -0.566 6.566 6 N -0.590 5.590 7 C 0.110 3.890 8 C -0.134 4.134 9 C -0.103 4.103 10 C -0.125 4.125 11 H 0.093 0.907 12 C 0.512 3.488 13 O -0.535 6.535 14 N -0.590 5.590 15 C 0.248 3.752 16 C -0.524 4.524 17 H 0.056 0.944 18 C 0.061 3.939 19 N -0.894 5.894 20 Si 0.896 3.104 21 H -0.280 1.280 22 H -0.286 1.286 23 H -0.275 1.275 24 C 0.139 3.861 25 C -0.165 4.165 26 C -0.175 4.175 27 C -0.171 4.171 28 C 0.135 3.865 29 H 0.080 0.920 30 H 0.065 0.935 31 H 0.066 0.934 32 H 0.070 0.930 33 H 0.069 0.931 34 H 0.091 0.909 35 H 0.072 0.928 36 H 0.067 0.933 37 H 0.080 0.920 38 H 0.077 0.923 39 H 0.072 0.928 40 H 0.041 0.959 41 H 0.035 0.965 42 H 0.263 0.737 43 H 0.071 0.929 44 H 0.082 0.918 45 H 0.103 0.897 46 H 0.096 0.904 47 H 0.089 0.911 48 H 0.093 0.907 49 H 0.089 0.911 50 H 0.109 0.891 51 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.034 -8.560 2.537 24.704 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.007 3.993 3 O -0.286 6.286 4 C 0.404 3.596 5 O -0.455 6.455 6 N -0.331 5.331 7 C -0.012 4.012 8 C -0.172 4.172 9 C -0.141 4.141 10 C -0.147 4.147 11 H 0.111 0.889 12 C 0.297 3.703 13 O -0.412 6.412 14 N -0.320 5.320 15 C 0.129 3.871 16 C -0.563 4.563 17 H 0.074 0.926 18 C -0.141 4.141 19 N -0.534 5.534 20 Si 0.724 3.276 21 H -0.206 1.206 22 H -0.212 1.212 23 H -0.200 1.200 24 C 0.015 3.985 25 C -0.184 4.184 26 C -0.212 4.212 27 C -0.209 4.209 28 C 0.014 3.986 29 H 0.099 0.901 30 H 0.084 0.916 31 H 0.085 0.915 32 H 0.088 0.912 33 H 0.087 0.913 34 H 0.109 0.891 35 H 0.090 0.910 36 H 0.085 0.915 37 H 0.098 0.902 38 H 0.096 0.904 39 H 0.091 0.909 40 H 0.059 0.941 41 H 0.053 0.947 42 H 0.072 0.928 43 H 0.089 0.911 44 H 0.100 0.900 45 H 0.121 0.879 46 H 0.114 0.886 47 H 0.108 0.892 48 H 0.111 0.889 49 H 0.107 0.893 50 H 0.127 0.873 51 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -22.435 -8.355 2.868 24.111 hybrid contribution 0.495 0.417 -0.868 1.083 sum -21.940 -7.938 2.000 23.417 Atomic orbital electron populations 1.21825 0.92698 1.02989 1.03442 1.22925 0.94642 0.78919 1.02803 1.86212 1.22294 1.32958 1.87180 1.17961 0.81096 0.84052 0.76540 1.91007 1.59592 1.39169 1.55699 1.46906 1.07282 1.03060 1.75822 1.21786 0.94066 0.86106 0.99252 1.21955 0.97057 0.99682 0.98519 1.21372 0.92698 0.95885 1.04143 1.21779 0.94406 0.98140 1.00421 0.88885 1.20020 0.86724 0.84114 0.79470 1.90675 1.80827 1.24593 1.45089 1.48233 1.09116 1.20966 1.53703 1.19276 0.73022 0.96736 0.98094 1.21420 0.94244 1.33613 1.06992 0.92556 1.24923 0.96578 0.96096 0.96482 1.69935 1.03881 1.46142 1.33404 0.86526 0.77718 0.80678 0.82650 1.20586 1.21186 1.19983 1.21103 0.99865 0.83489 0.94032 1.22835 1.05073 0.90071 1.00464 1.23015 0.92455 1.02441 1.03331 1.22865 0.96339 0.99677 1.01985 1.21694 0.77397 1.01567 0.97956 0.90088 0.91553 0.91504 0.91160 0.91252 0.89086 0.90980 0.91464 0.90171 0.90411 0.90886 0.94058 0.94693 0.92772 0.91120 0.89984 0.87938 0.88596 0.89245 0.88863 0.89287 0.87290 0.90474 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.84 10.29 37.16 0.38 -0.46 16 2 C 0.08 0.70 6.19 37.16 0.23 0.93 16 3 O -0.37 -4.09 8.86 -40.30 -0.36 -4.45 16 4 C 0.65 8.65 8.43 54.06 0.46 9.11 16 5 O -0.57 -8.95 15.54 -19.28 -0.30 -9.25 16 6 N -0.59 -7.27 2.97 -178.53 -0.53 -7.80 16 7 C 0.11 1.05 6.45 -3.71 -0.02 1.03 16 8 C -0.13 -1.28 6.08 -26.61 -0.16 -1.44 16 9 C -0.10 -1.35 4.66 -26.69 -0.12 -1.48 16 10 C -0.13 -1.88 1.98 -91.63 -0.18 -2.06 16 11 H 0.09 1.33 6.01 -51.93 -0.31 1.02 16 12 C 0.51 10.40 6.80 -10.98 -0.07 10.33 16 13 O -0.53 -13.10 15.72 5.56 0.09 -13.01 16 14 N -0.59 -12.42 2.46 -175.06 -0.43 -12.85 16 15 C 0.25 6.46 5.15 -5.19 -0.03 6.44 16 16 C -0.52 -14.86 9.39 -34.44 -0.32 -15.18 16 17 H 0.06 1.60 7.81 -52.49 -0.41 1.19 16 18 C 0.06 1.75 5.46 -17.82 -0.10 1.66 16 19 N -0.89 -26.69 13.29 55.43 0.74 -25.96 16 20 Si 0.90 21.99 29.54 -169.99 -5.02 16.97 16 21 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 22 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 23 H -0.27 -6.58 7.11 56.52 0.40 -6.18 16 24 C 0.14 2.37 5.52 -4.04 -0.02 2.35 16 25 C -0.17 -2.57 4.86 -90.61 -0.44 -3.01 16 26 C -0.18 -2.55 10.18 -26.69 -0.27 -2.83 16 27 C -0.17 -2.30 10.25 -26.69 -0.27 -2.58 16 28 C 0.14 1.90 5.69 -3.68 -0.02 1.88 16 29 H 0.08 0.31 8.14 -51.93 -0.42 -0.11 16 30 H 0.07 0.36 8.14 -51.93 -0.42 -0.07 16 31 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 32 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 33 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 34 H 0.09 0.76 6.93 -51.93 -0.36 0.40 16 35 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 36 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 37 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 38 H 0.08 1.09 7.92 -51.92 -0.41 0.67 16 39 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 40 H 0.04 1.22 7.47 -51.93 -0.39 0.83 16 41 H 0.04 0.93 8.07 -51.93 -0.42 0.51 16 42 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 43 H 0.07 1.06 5.67 -51.93 -0.29 0.76 16 44 H 0.08 1.46 7.85 -51.93 -0.41 1.05 16 45 H 0.10 1.70 6.70 -51.93 -0.35 1.35 16 46 H 0.10 1.41 8.03 -51.93 -0.42 0.99 16 47 H 0.09 1.25 8.14 -51.93 -0.42 0.82 16 48 H 0.09 1.26 8.14 -51.93 -0.42 0.83 16 49 H 0.09 1.10 8.14 -51.93 -0.42 0.68 16 50 H 0.11 1.66 4.06 -51.93 -0.21 1.45 16 51 H 0.08 1.10 8.14 -51.93 -0.42 0.68 16 LS Contribution 407.76 15.07 6.14 6.14 Total: -1.00 -33.76 407.76 -9.25 -43.02 By element: Atomic # 1 Polarization: 11.12 SS G_CDS: -8.61 Total: 2.51 kcal Atomic # 6 Polarization: 5.66 SS G_CDS: -0.97 Total: 4.69 kcal Atomic # 7 Polarization: -46.39 SS G_CDS: -0.22 Total: -46.61 kcal Atomic # 8 Polarization: -26.14 SS G_CDS: -0.57 Total: -26.71 kcal Atomic # 14 Polarization: 21.99 SS G_CDS: -5.02 Total: 16.97 kcal Total LS contribution 6.14 Total: 6.14 kcal Total: -33.76 -9.25 -43.02 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000491171020.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.695 kcal (2) G-P(sol) polarization free energy of solvation -33.764 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.459 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.254 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.018 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.713 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds