Wall clock time and date at job start Tue Mar 31 2020 21:00:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 O 1.45204 * 109.47120 * 2 1 4 4 C 1.34631 * 116.99945 * 180.02562 * 3 2 1 5 5 O 1.21513 * 120.00425 * 359.97438 * 4 3 2 6 6 N 1.34782 * 119.99986 * 180.02562 * 4 3 2 7 7 C 1.46926 * 120.62931 * 0.02562 * 6 4 3 8 8 C 1.53190 * 108.77271 * 233.58842 * 7 6 4 9 9 C 1.53038 * 109.34230 * 305.38148 * 8 7 6 10 10 C 1.53035 * 109.53908 * 61.31543 * 9 8 7 11 11 H 1.09002 * 109.49955 * 58.65509 * 10 9 8 12 12 C 1.50700 * 109.49727 * 178.72004 * 10 9 8 13 13 O 1.21277 * 120.00275 * 23.46950 * 12 10 9 14 14 N 1.34782 * 119.99775 * 203.47164 * 12 10 9 15 15 C 1.46501 * 119.99754 * 183.59761 * 14 12 10 16 16 C 1.50702 * 109.46990 * 269.99515 * 15 14 12 17 17 H 1.07999 * 119.99851 * 0.02562 * 16 15 14 18 18 C 1.37879 * 119.99922 * 179.97438 * 16 15 14 19 19 N 1.31514 * 120.00054 * 0.02562 * 18 16 15 20 20 Si 1.86805 * 119.99755 * 180.02562 * 18 16 15 21 21 H 1.48502 * 109.46903 * 90.00229 * 20 18 16 22 22 H 1.48496 * 109.47108 * 210.00179 * 20 18 16 23 23 H 1.48504 * 109.47195 * 330.00339 * 20 18 16 24 24 C 1.46493 * 120.00095 * 3.59095 * 14 12 10 25 25 C 1.53002 * 109.47268 * 263.55575 * 24 14 12 26 26 C 1.53005 * 117.49786 * 243.28447 * 25 24 14 27 27 C 1.53004 * 117.49643 * 174.62804 * 25 24 14 28 28 C 1.46924 * 120.62911 * 179.97438 * 6 4 3 29 29 H 1.09003 * 109.46715 * 180.02562 * 1 2 3 30 30 H 1.09005 * 109.46473 * 299.99760 * 1 2 3 31 31 H 1.09000 * 109.47179 * 59.99770 * 1 2 3 32 32 H 1.09004 * 109.46985 * 240.00119 * 2 1 3 33 33 H 1.09000 * 109.47179 * 120.00230 * 2 1 3 34 34 H 1.09004 * 109.58844 * 353.37332 * 7 6 4 35 35 H 1.08994 * 109.58263 * 113.80072 * 7 6 4 36 36 H 1.09004 * 109.49768 * 65.31734 * 8 7 6 37 37 H 1.08999 * 109.49489 * 185.38182 * 8 7 6 38 38 H 1.09008 * 109.43090 * 301.31452 * 9 8 7 39 39 H 1.08990 * 109.49028 * 181.35896 * 9 8 7 40 40 H 1.09000 * 109.47178 * 29.99651 * 15 14 12 41 41 H 1.09005 * 109.47009 * 149.99822 * 15 14 12 42 42 H 0.97001 * 119.99761 * 179.97438 * 19 18 16 43 43 H 1.09003 * 109.47425 * 23.55762 * 24 14 12 44 44 H 1.09000 * 109.47055 * 143.55711 * 24 14 12 45 45 H 1.08994 * 115.55253 * 28.95682 * 25 24 14 46 46 H 1.08994 * 117.49645 * 0.02562 * 26 25 24 47 47 H 1.09000 * 117.49149 * 145.02289 * 26 25 24 48 48 H 1.09001 * 117.49653 * 214.97938 * 27 25 24 49 49 H 1.09000 * 117.50088 * 359.97438 * 27 25 24 50 50 H 1.09000 * 109.58788 * 6.61972 * 28 6 4 51 51 H 1.08997 * 109.58523 * 246.19950 * 28 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0141 1.3690 0.0000 4 6 3.3488 1.5454 -0.0005 5 8 4.0890 0.5818 -0.0005 6 7 3.8639 2.7909 0.0000 7 6 2.9818 3.9658 0.0016 8 6 3.3732 4.8779 -1.1653 9 6 4.8639 5.2110 -1.0703 10 6 5.6835 3.9223 -1.1676 11 1 5.4634 3.4214 -2.1103 12 6 7.1522 4.2544 -1.1055 13 8 7.5191 5.2865 -0.5850 14 7 8.0580 3.4044 -1.6286 15 6 9.4893 3.6884 -1.4988 16 6 9.9483 4.5054 -2.6790 17 1 9.2442 4.7854 -3.4485 18 6 11.2670 4.8962 -2.7759 19 7 12.1244 4.5556 -1.8385 20 14 11.8358 5.9095 -4.2385 21 1 11.6893 7.3541 -3.9268 22 1 13.2610 5.6072 -4.5259 23 1 11.0092 5.5729 -5.4254 24 6 7.6112 2.1965 -2.3267 25 6 7.6420 1.0091 -1.3622 26 6 8.5984 -0.1402 -1.6869 27 6 7.0896 -0.3255 -1.8670 28 6 5.3183 2.9993 -0.0001 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3632 0.5138 0.8901 31 1 -0.3633 0.5139 -0.8900 32 1 1.8934 -0.5138 -0.8900 33 1 1.8934 -0.5139 0.8900 34 1 1.9465 3.6457 -0.1162 35 1 3.0947 4.5061 0.9415 36 1 3.1742 4.3682 -2.1080 37 1 2.7907 5.7980 -1.1191 38 1 5.0664 5.6990 -0.1168 39 1 5.1398 5.8793 -1.8858 40 1 9.6672 4.2463 -0.5795 41 1 10.0444 2.7508 -1.4680 42 1 13.0521 4.8303 -1.9069 43 1 6.5943 2.3424 -2.6910 44 1 8.2738 1.9976 -3.1690 45 1 7.4867 1.2529 -0.3113 46 1 9.2059 -0.0502 -2.5874 47 1 9.0719 -0.6526 -0.8495 48 1 6.5712 -0.9598 -1.1479 49 1 6.7039 -0.3575 -2.8860 50 1 5.8248 2.0415 -0.1189 51 1 5.6212 3.4610 0.9397 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000491171020.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:00:20 Heat of formation + Delta-G solvation = -112.340344 kcal Electronic energy + Delta-G solvation = -31329.434264 eV Core-core repulsion = 27228.912041 eV Total energy + Delta-G solvation = -4100.522223 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.204 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -41.91551 -41.00752 -38.92776 -38.40082 -37.33697 -36.12817 -34.69199 -34.10536 -32.55552 -32.22989 -29.76373 -27.70460 -26.76535 -25.93845 -24.18629 -23.91695 -23.17594 -22.58542 -21.86858 -21.13268 -19.80849 -19.14719 -18.62978 -18.10652 -17.81906 -17.67457 -17.30664 -16.52958 -16.32392 -15.99957 -15.77439 -15.47402 -15.36981 -14.97966 -14.69235 -14.42727 -14.32997 -14.20247 -14.15138 -13.71540 -13.63778 -13.39979 -13.30783 -12.96251 -12.84528 -12.63532 -12.61325 -12.53858 -12.42980 -12.32208 -12.22707 -12.04251 -11.95127 -11.71758 -11.67864 -11.50354 -11.46157 -11.24919 -10.83322 -10.63962 -10.53399 -9.86480 -9.48077 -8.21949 -6.36270 1.00109 1.35991 1.38897 1.48486 1.67128 1.80989 2.22542 2.41680 2.84470 2.94065 3.07811 3.48003 3.64520 3.73431 3.87535 3.92571 4.02932 4.09151 4.09482 4.13968 4.15148 4.18326 4.34894 4.41534 4.50351 4.51592 4.52901 4.66964 4.74440 4.77112 4.80115 4.84711 4.90179 4.99265 5.02945 5.05115 5.06038 5.13885 5.18603 5.21838 5.27380 5.30634 5.35533 5.38224 5.44323 5.56409 5.82767 6.06623 6.25788 6.67936 6.75891 7.19704 7.26843 7.43013 8.85404 Molecular weight = 338.20amu Principal moments of inertia in cm(-1) A = 0.015671 B = 0.003237 C = 0.002833 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1786.278243 B = 8647.144463 C = 9879.910149 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.074 3.926 3 O -0.366 6.366 4 C 0.648 3.352 5 O -0.596 6.596 6 N -0.588 5.588 7 C 0.107 3.893 8 C -0.121 4.121 9 C -0.102 4.102 10 C -0.108 4.108 11 H 0.107 0.893 12 C 0.505 3.495 13 O -0.585 6.585 14 N -0.595 5.595 15 C 0.266 3.734 16 C -0.540 4.540 17 H 0.053 0.947 18 C 0.008 3.992 19 N -0.928 5.928 20 Si 0.966 3.034 21 H -0.280 1.280 22 H -0.275 1.275 23 H -0.262 1.262 24 C 0.142 3.858 25 C -0.180 4.180 26 C -0.182 4.182 27 C -0.141 4.141 28 C 0.144 3.856 29 H 0.100 0.900 30 H 0.069 0.931 31 H 0.070 0.930 32 H 0.067 0.933 33 H 0.065 0.935 34 H 0.112 0.888 35 H 0.082 0.918 36 H 0.073 0.927 37 H 0.108 0.892 38 H 0.065 0.935 39 H 0.062 0.938 40 H -0.003 1.003 41 H 0.022 0.978 42 H 0.267 0.733 43 H 0.096 0.904 44 H 0.074 0.926 45 H 0.090 0.910 46 H 0.093 0.907 47 H 0.092 0.908 48 H 0.097 0.903 49 H 0.106 0.894 50 H 0.098 0.902 51 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.917 -9.045 1.061 27.470 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.001 4.001 3 O -0.280 6.280 4 C 0.403 3.597 5 O -0.487 6.487 6 N -0.328 5.328 7 C -0.014 4.014 8 C -0.159 4.159 9 C -0.140 4.140 10 C -0.130 4.130 11 H 0.124 0.876 12 C 0.293 3.707 13 O -0.465 6.465 14 N -0.324 5.324 15 C 0.145 3.855 16 C -0.578 4.578 17 H 0.071 0.929 18 C -0.191 4.191 19 N -0.568 5.568 20 Si 0.790 3.210 21 H -0.205 1.205 22 H -0.200 1.200 23 H -0.186 1.186 24 C 0.020 3.980 25 C -0.199 4.199 26 C -0.219 4.219 27 C -0.179 4.179 28 C 0.021 3.979 29 H 0.119 0.881 30 H 0.088 0.912 31 H 0.089 0.911 32 H 0.086 0.914 33 H 0.083 0.917 34 H 0.130 0.870 35 H 0.100 0.900 36 H 0.092 0.908 37 H 0.126 0.874 38 H 0.084 0.916 39 H 0.080 0.920 40 H 0.015 0.985 41 H 0.040 0.960 42 H 0.076 0.924 43 H 0.114 0.886 44 H 0.092 0.908 45 H 0.108 0.892 46 H 0.112 0.888 47 H 0.111 0.889 48 H 0.116 0.884 49 H 0.125 0.875 50 H 0.116 0.884 51 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -25.380 -8.869 1.379 26.920 hybrid contribution 1.373 0.527 -0.341 1.510 sum -24.007 -8.341 1.038 25.436 Atomic orbital electron populations 1.21832 0.90115 1.04412 1.03764 1.23222 0.96551 0.77749 1.02530 1.86232 1.20604 1.34458 1.86732 1.18080 0.81715 0.83809 0.76115 1.90983 1.60465 1.40205 1.57012 1.46886 1.06611 1.03854 1.75454 1.22029 0.94443 0.85091 0.99803 1.21907 0.94142 1.01051 0.98816 1.21394 0.95133 0.94411 1.03110 1.21682 0.90233 0.99657 1.01437 0.87553 1.20972 0.88817 0.83001 0.77917 1.90639 1.82091 1.26724 1.47048 1.48210 1.07372 1.22606 1.54233 1.18693 0.76188 0.95083 0.95530 1.21677 0.94624 1.34147 1.07399 0.92920 1.25843 0.96659 0.97131 0.99454 1.70057 1.04315 1.47126 1.35291 0.85441 0.77744 0.78551 0.79236 1.20548 1.20031 1.18636 1.21251 1.00752 0.82317 0.93721 1.22673 1.07296 0.90439 0.99521 1.23078 0.93434 1.01934 1.03415 1.22874 0.95116 0.97094 1.02783 1.21414 0.78922 1.00523 0.97042 0.88111 0.91235 0.91108 0.91413 0.91678 0.87031 0.89984 0.90795 0.87358 0.91607 0.91956 0.98537 0.95973 0.92446 0.88597 0.90783 0.89237 0.88812 0.88902 0.88443 0.87539 0.88390 0.91232 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.18 10.29 71.98 0.74 -0.44 16 2 C 0.07 1.11 6.19 71.98 0.45 1.56 16 3 O -0.37 -7.21 8.86 -55.40 -0.49 -7.70 16 4 C 0.65 16.18 8.43 129.79 1.09 17.27 16 5 O -0.60 -18.24 15.54 19.80 0.31 -17.93 16 6 N -0.59 -13.48 2.97 -949.16 -2.82 -16.30 16 7 C 0.11 1.73 6.45 86.36 0.56 2.29 16 8 C -0.12 -1.95 6.08 30.67 0.19 -1.76 16 9 C -0.10 -2.60 4.66 30.62 0.14 -2.45 16 10 C -0.11 -3.21 1.98 -11.45 -0.02 -3.23 16 11 H 0.11 2.87 6.01 -2.39 -0.01 2.86 16 12 C 0.51 21.31 6.80 87.66 0.60 21.91 16 13 O -0.58 -30.19 15.72 -3.02 -0.05 -30.23 16 14 N -0.59 -26.06 2.46 -826.15 -2.03 -28.09 16 15 C 0.27 14.68 5.15 85.63 0.44 15.12 16 16 C -0.54 -31.58 9.39 25.60 0.24 -31.33 16 17 H 0.05 3.05 7.81 -2.91 -0.02 3.02 16 18 C 0.01 0.47 5.46 84.66 0.46 0.93 16 19 N -0.93 -56.93 13.29 21.45 0.28 -56.64 16 20 Si 0.97 45.45 29.54 68.60 2.03 47.48 16 21 H -0.28 -13.10 7.11 99.48 0.71 -12.39 16 22 H -0.28 -12.40 7.11 99.48 0.71 -11.69 16 23 H -0.26 -11.72 7.11 99.48 0.71 -11.01 16 24 C 0.14 4.87 5.52 86.38 0.48 5.35 16 25 C -0.18 -5.63 4.86 -10.79 -0.05 -5.69 16 26 C -0.18 -5.25 10.18 30.62 0.31 -4.94 16 27 C -0.14 -3.59 10.25 30.62 0.31 -3.27 16 28 C 0.14 4.00 5.69 86.38 0.49 4.49 16 29 H 0.10 0.46 8.14 -2.39 -0.02 0.44 16 30 H 0.07 0.55 8.14 -2.38 -0.02 0.53 16 31 H 0.07 0.55 8.14 -2.39 -0.02 0.53 16 32 H 0.07 1.06 8.14 -2.38 -0.02 1.04 16 33 H 0.06 1.03 8.14 -2.39 -0.02 1.01 16 34 H 0.11 1.42 6.93 -2.39 -0.02 1.40 16 35 H 0.08 1.21 8.14 -2.39 -0.02 1.19 16 36 H 0.07 1.15 8.14 -2.38 -0.02 1.13 16 37 H 0.11 1.22 8.14 -2.39 -0.02 1.20 16 38 H 0.07 1.83 7.92 -2.38 -0.02 1.81 16 39 H 0.06 1.71 8.14 -2.39 -0.02 1.69 16 40 H 0.00 -0.22 7.47 -2.39 -0.02 -0.24 16 41 H 0.02 1.26 8.07 -2.38 -0.02 1.24 16 42 H 0.27 15.32 8.31 -92.71 -0.77 14.55 16 43 H 0.10 2.76 5.67 -2.39 -0.01 2.74 16 44 H 0.07 2.65 7.85 -2.39 -0.02 2.63 16 45 H 0.09 3.06 6.70 -2.39 -0.02 3.05 16 46 H 0.09 2.75 8.03 -2.39 -0.02 2.73 16 47 H 0.09 2.59 8.14 -2.39 -0.02 2.57 16 48 H 0.10 2.45 8.14 -2.39 -0.02 2.43 16 49 H 0.11 2.36 8.14 -2.39 -0.02 2.34 16 50 H 0.10 3.00 4.06 -2.39 -0.01 2.99 16 51 H 0.07 2.04 8.14 -2.39 -0.02 2.02 16 Total: -1.00 -76.36 407.76 4.57 -71.79 By element: Atomic # 1 Polarization: 20.92 SS G_CDS: 0.91 Total: 21.83 kcal Atomic # 6 Polarization: 9.37 SS G_CDS: 6.43 Total: 15.80 kcal Atomic # 7 Polarization: -96.47 SS G_CDS: -4.57 Total: -101.04 kcal Atomic # 8 Polarization: -55.63 SS G_CDS: -0.23 Total: -55.86 kcal Atomic # 14 Polarization: 45.45 SS G_CDS: 2.03 Total: 47.48 kcal Total: -76.36 4.57 -71.79 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000491171020.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.548 kcal (2) G-P(sol) polarization free energy of solvation -76.358 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.906 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.565 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.793 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.340 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds