Wall clock time and date at job start Tue Mar 31 2020 20:57:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 O 1.45197 * 109.47232 * 2 1 4 4 C 1.34634 * 116.99602 * 180.02562 * 3 2 1 5 5 O 1.21507 * 120.00547 * 359.97438 * 4 3 2 6 6 N 1.34781 * 119.99549 * 179.97438 * 4 3 2 7 7 C 1.46921 * 120.63370 * 0.02562 * 6 4 3 8 8 C 1.53195 * 108.77524 * 126.36724 * 7 6 4 9 9 C 1.53043 * 109.31164 * 54.63857 * 8 7 6 10 10 C 1.53042 * 109.53555 * 298.63344 * 9 8 7 11 11 H 1.08993 * 109.50108 * 301.41248 * 10 9 8 12 12 C 1.50703 * 109.49370 * 181.31632 * 10 9 8 13 13 O 1.21277 * 120.00508 * 325.47449 * 12 10 9 14 14 N 1.34778 * 119.99885 * 145.48161 * 12 10 9 15 15 C 1.46928 * 120.63131 * 5.12890 * 14 12 10 16 16 C 1.53622 * 108.54355 * 126.37213 * 15 14 12 17 17 C 1.53042 * 109.23965 * 54.85996 * 16 15 14 18 18 C 1.50698 * 109.45851 * 178.49408 * 17 16 15 19 19 H 1.08005 * 120.00307 * 120.07131 * 18 17 16 20 20 C 1.37880 * 119.99987 * 300.06477 * 18 17 16 21 21 N 1.31519 * 120.00001 * 180.02562 * 20 18 17 22 22 Si 1.86797 * 119.99942 * 0.02562 * 20 18 17 23 23 H 1.48500 * 109.47152 * 89.99659 * 22 20 18 24 24 H 1.48492 * 109.47170 * 209.99962 * 22 20 18 25 25 H 1.48500 * 109.47006 * 329.99886 * 22 20 18 26 26 C 1.53047 * 109.53631 * 298.51039 * 17 16 15 27 27 C 1.46924 * 120.63054 * 185.41521 * 14 12 10 28 28 C 1.46933 * 120.62913 * 179.97438 * 6 4 3 29 29 H 1.08994 * 109.46921 * 300.00742 * 1 2 3 30 30 H 1.08998 * 109.46823 * 60.00029 * 1 2 3 31 31 H 1.08998 * 109.47083 * 180.02562 * 1 2 3 32 32 H 1.08994 * 109.46921 * 239.99257 * 2 1 3 33 33 H 1.08998 * 109.46823 * 119.99971 * 2 1 3 34 34 H 1.09000 * 109.58906 * 246.15533 * 7 6 4 35 35 H 1.09000 * 109.58752 * 6.58421 * 7 6 4 36 36 H 1.08999 * 109.49322 * 174.58320 * 8 7 6 37 37 H 1.08994 * 109.50110 * 294.65315 * 8 7 6 38 38 H 1.08996 * 109.45864 * 178.61317 * 9 8 7 39 39 H 1.09000 * 109.46245 * 58.65406 * 9 8 7 40 40 H 1.08993 * 109.59154 * 246.20522 * 15 14 12 41 41 H 1.08999 * 109.58344 * 6.63485 * 15 14 12 42 42 H 1.09005 * 109.63664 * 294.86830 * 16 15 14 43 43 H 1.08990 * 109.43544 * 174.72942 * 16 15 14 44 44 H 1.08991 * 109.45251 * 58.52616 * 17 16 15 45 45 H 0.96996 * 119.99598 * 179.97438 * 21 20 18 46 46 H 1.09000 * 109.49532 * 301.41207 * 26 17 16 47 47 H 1.09000 * 109.51996 * 181.33249 * 26 17 16 48 48 H 1.08994 * 109.58570 * 353.37268 * 27 14 12 49 49 H 1.09011 * 109.58563 * 113.65253 * 27 14 12 50 50 H 1.08998 * 109.58868 * 113.84274 * 28 6 4 51 51 H 1.09002 * 109.70371 * 353.48688 * 28 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0141 1.3689 0.0000 4 6 3.3488 1.5452 -0.0005 5 8 4.0890 0.5816 -0.0005 6 7 3.8640 2.7907 -0.0011 7 6 2.9820 3.9657 -0.0006 8 6 3.3747 4.8765 1.1670 9 6 4.8653 5.2096 1.0698 10 6 5.6850 3.9207 1.1657 11 1 5.4653 3.4191 2.1081 12 6 7.1536 4.2529 1.1025 13 8 7.5379 5.1743 0.4139 14 7 8.0400 3.5259 1.8110 15 6 7.6058 2.3389 2.5603 16 6 8.4767 1.1471 2.1350 17 6 9.9519 1.5063 2.3273 18 6 10.8095 0.3272 1.9463 19 1 11.5352 0.4214 1.1520 20 6 10.6679 -0.8720 2.6120 21 7 11.4167 -1.9009 2.2799 22 14 9.4124 -1.0351 3.9855 23 1 8.1141 -1.4807 3.4190 24 1 9.8892 -2.0336 4.9759 25 1 9.2359 0.2794 4.6535 26 6 10.3071 2.7025 1.4411 27 6 9.4579 3.9087 1.8540 28 6 5.3185 2.9992 -0.0011 29 1 -0.3633 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0276 0.0005 32 1 1.8933 -0.5139 -0.8899 33 1 1.8933 -0.5138 0.8900 34 1 3.0939 4.5070 -0.9400 35 1 1.9468 3.6455 0.1180 36 1 2.7926 5.7969 1.1220 37 1 3.1762 4.3661 2.1093 38 1 5.1420 5.8775 1.8855 39 1 5.0669 5.6981 0.1165 40 1 7.7236 2.5181 3.6290 41 1 6.5603 2.1277 2.3362 42 1 8.2926 0.9147 1.0860 43 1 8.2303 0.2806 2.7486 44 1 10.1299 1.7625 3.3716 45 1 11.3173 -2.7443 2.7485 46 1 10.1057 2.4555 0.3987 47 1 11.3634 2.9433 1.5604 48 1 9.6347 4.7336 1.1638 49 1 9.7230 4.2158 2.8658 50 1 5.6214 3.4615 -0.9406 51 1 5.8269 2.0421 0.1158 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000495105655.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:57:46 Heat of formation + Delta-G solvation = -140.356750 kcal Electronic energy + Delta-G solvation = -31297.142289 eV Core-core repulsion = 27195.405184 eV Total energy + Delta-G solvation = -4101.737106 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.204 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -42.03570 -41.27966 -39.29365 -38.40686 -37.45039 -35.37628 -34.33935 -33.48696 -32.65279 -32.40023 -31.66929 -28.36456 -26.82619 -25.81736 -24.29228 -24.14275 -23.95521 -22.71120 -21.65356 -20.92113 -19.80419 -19.19832 -18.88773 -18.27414 -18.05237 -17.76851 -16.90652 -16.62772 -16.48927 -15.82368 -15.69204 -15.53039 -15.13276 -15.07310 -15.02003 -14.71207 -14.41645 -14.29045 -14.24551 -14.05643 -13.84189 -13.66956 -13.52278 -13.40214 -12.92412 -12.85783 -12.60317 -12.48013 -12.32325 -12.18581 -12.10172 -11.98841 -11.90818 -11.67336 -11.57925 -11.54903 -11.52019 -11.20512 -11.04725 -10.77686 -10.65048 -9.94299 -9.62726 -8.30407 -6.34782 0.90237 1.30582 1.34541 1.45213 1.49623 1.65962 1.97317 2.31982 2.77440 3.04778 3.35636 3.60557 3.66563 3.85119 3.99819 4.02197 4.02513 4.09423 4.12328 4.13723 4.17614 4.27996 4.31548 4.38133 4.41266 4.50684 4.51609 4.64424 4.69379 4.70547 4.73887 4.79149 4.88729 4.93048 4.94131 5.00725 5.03690 5.09085 5.10797 5.13183 5.30132 5.35285 5.38072 5.39012 5.53940 5.65530 5.71857 6.16042 6.29744 6.37799 6.72388 7.06631 7.10606 7.30548 8.86782 Molecular weight = 338.20amu Principal moments of inertia in cm(-1) A = 0.010355 B = 0.003855 C = 0.002996 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2703.319761 B = 7260.992784 C = 9342.282515 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.071 3.929 3 O -0.362 6.362 4 C 0.645 3.355 5 O -0.609 6.609 6 N -0.587 5.587 7 C 0.105 3.895 8 C -0.124 4.124 9 C -0.098 4.098 10 C -0.116 4.116 11 H 0.107 0.893 12 C 0.522 3.478 13 O -0.572 6.572 14 N -0.604 5.604 15 C 0.108 3.892 16 C -0.132 4.132 17 C 0.015 3.985 18 C -0.520 4.520 19 H 0.028 0.972 20 C 0.007 3.993 21 N -0.953 5.953 22 Si 0.948 3.052 23 H -0.270 1.270 24 H -0.300 1.300 25 H -0.231 1.231 26 C -0.107 4.107 27 C 0.116 3.884 28 C 0.143 3.857 29 H 0.072 0.928 30 H 0.072 0.928 31 H 0.099 0.901 32 H 0.063 0.937 33 H 0.063 0.937 34 H 0.086 0.914 35 H 0.107 0.893 36 H 0.112 0.888 37 H 0.071 0.929 38 H 0.076 0.924 39 H 0.073 0.927 40 H 0.088 0.912 41 H 0.096 0.904 42 H 0.047 0.953 43 H 0.048 0.952 44 H 0.037 0.963 45 H 0.264 0.736 46 H 0.038 0.962 47 H 0.068 0.932 48 H 0.086 0.914 49 H 0.085 0.915 50 H 0.081 0.919 51 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.651 14.172 0.021 30.185 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.003 4.003 3 O -0.276 6.276 4 C 0.400 3.600 5 O -0.501 6.501 6 N -0.327 5.327 7 C -0.016 4.016 8 C -0.162 4.162 9 C -0.136 4.136 10 C -0.138 4.138 11 H 0.125 0.875 12 C 0.311 3.689 13 O -0.451 6.451 14 N -0.336 5.336 15 C -0.014 4.014 16 C -0.170 4.170 17 C -0.003 4.003 18 C -0.558 4.558 19 H 0.046 0.954 20 C -0.190 4.190 21 N -0.594 5.594 22 Si 0.775 3.225 23 H -0.197 1.197 24 H -0.228 1.228 25 H -0.154 1.154 26 C -0.145 4.145 27 C -0.006 4.006 28 C 0.020 3.980 29 H 0.091 0.909 30 H 0.091 0.909 31 H 0.118 0.882 32 H 0.081 0.919 33 H 0.082 0.918 34 H 0.104 0.896 35 H 0.125 0.875 36 H 0.130 0.870 37 H 0.090 0.910 38 H 0.095 0.905 39 H 0.092 0.908 40 H 0.107 0.893 41 H 0.114 0.886 42 H 0.065 0.935 43 H 0.067 0.933 44 H 0.055 0.945 45 H 0.073 0.927 46 H 0.057 0.943 47 H 0.087 0.913 48 H 0.104 0.896 49 H 0.103 0.897 50 H 0.099 0.901 51 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -26.256 14.146 -0.312 29.826 hybrid contribution 0.642 -1.340 0.177 1.497 sum -25.615 12.806 -0.135 28.638 Atomic orbital electron populations 1.21821 0.89602 1.04470 1.03986 1.23243 0.96900 0.77806 1.02339 1.86221 1.20380 1.34301 1.86660 1.18211 0.81736 0.84003 0.76065 1.91034 1.60801 1.40839 1.57403 1.46916 1.06860 1.03635 1.75296 1.22092 0.94239 0.84869 1.00352 1.21924 0.94918 1.00957 0.98368 1.21411 0.94498 0.93848 1.03885 1.21744 0.90849 1.00049 1.01206 0.87467 1.20742 0.88558 0.81465 0.78171 1.90645 1.80950 1.32202 1.41337 1.48255 1.08883 1.27551 1.48862 1.22021 0.98925 0.83722 0.96719 1.22285 0.97420 0.96686 1.00587 1.19093 0.91577 0.93327 0.96345 1.21391 1.19914 0.96164 1.18322 0.95403 1.25978 0.97969 0.95260 0.99750 1.70069 1.42388 1.03091 1.43810 0.85845 0.78613 0.79264 0.78805 1.19687 1.22807 1.15377 1.21701 0.99361 0.94628 0.98831 1.21673 0.79188 0.97065 1.02657 1.21305 0.78680 0.99851 0.98142 0.90856 0.90916 0.88216 0.91898 0.91834 0.89572 0.87515 0.86993 0.90993 0.90483 0.90850 0.89347 0.88565 0.93458 0.93342 0.94538 0.92667 0.94289 0.91319 0.89551 0.89685 0.90108 0.90485 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.35 10.29 71.98 0.74 -0.61 16 2 C 0.07 1.25 6.19 71.98 0.45 1.70 16 3 O -0.36 -7.56 8.86 -55.44 -0.49 -8.05 16 4 C 0.64 17.12 8.43 129.79 1.09 18.22 16 5 O -0.61 -21.54 15.55 19.82 0.31 -21.23 16 6 N -0.59 -12.65 2.97 -949.34 -2.82 -15.47 16 7 C 0.11 1.37 6.45 86.36 0.56 1.93 16 8 C -0.12 -1.31 6.08 30.67 0.19 -1.13 16 9 C -0.10 -1.61 4.80 30.62 0.15 -1.46 16 10 C -0.12 -2.56 1.87 -11.48 -0.02 -2.58 16 11 H 0.11 2.16 6.19 -2.39 -0.01 2.15 16 12 C 0.52 15.20 6.70 87.66 0.59 15.79 16 13 O -0.57 -19.64 15.71 -3.02 -0.05 -19.69 16 14 N -0.60 -18.53 2.97 -818.08 -2.43 -20.95 16 15 C 0.11 3.28 6.18 86.51 0.53 3.82 16 16 C -0.13 -5.35 4.86 30.82 0.15 -5.20 16 17 C 0.02 0.69 1.65 -11.51 -0.02 0.67 16 18 C -0.52 -29.87 9.14 25.60 0.23 -29.63 16 19 H 0.03 1.79 7.99 -2.91 -0.02 1.77 16 20 C 0.01 0.41 5.45 84.65 0.46 0.87 16 21 N -0.95 -60.82 13.96 21.45 0.30 -60.52 16 22 Si 0.95 44.42 24.38 68.60 1.67 46.09 16 23 H -0.27 -12.32 6.86 99.48 0.68 -11.64 16 24 H -0.30 -14.13 7.11 99.48 0.71 -13.43 16 25 H -0.23 -9.44 6.53 99.48 0.65 -8.79 16 26 C -0.11 -4.19 5.30 30.67 0.16 -4.03 16 27 C 0.12 3.69 6.44 86.36 0.56 4.25 16 28 C 0.14 3.53 5.62 86.34 0.49 4.02 16 29 H 0.07 0.62 8.14 -2.39 -0.02 0.61 16 30 H 0.07 0.62 8.14 -2.39 -0.02 0.60 16 31 H 0.10 0.62 8.14 -2.39 -0.02 0.60 16 32 H 0.06 1.19 8.14 -2.39 -0.02 1.17 16 33 H 0.06 1.21 8.14 -2.39 -0.02 1.19 16 34 H 0.09 0.95 8.14 -2.39 -0.02 0.93 16 35 H 0.11 1.16 6.93 -2.39 -0.02 1.14 16 36 H 0.11 0.63 8.14 -2.39 -0.02 0.61 16 37 H 0.07 0.78 8.14 -2.39 -0.02 0.77 16 38 H 0.08 1.21 8.14 -2.39 -0.02 1.19 16 39 H 0.07 1.33 7.90 -2.39 -0.02 1.31 16 40 H 0.09 2.34 8.14 -2.39 -0.02 2.32 16 41 H 0.10 2.55 5.38 -2.39 -0.01 2.54 16 42 H 0.05 2.08 8.14 -2.38 -0.02 2.06 16 43 H 0.05 2.07 3.24 -2.39 -0.01 2.06 16 44 H 0.04 1.59 7.20 -2.39 -0.02 1.58 16 45 H 0.26 15.83 8.31 -92.71 -0.77 15.06 16 46 H 0.04 1.65 8.14 -2.39 -0.02 1.63 16 47 H 0.07 2.65 8.14 -2.39 -0.02 2.63 16 48 H 0.09 2.75 7.00 -2.39 -0.02 2.73 16 49 H 0.08 2.36 8.14 -2.38 -0.02 2.34 16 50 H 0.08 2.00 8.14 -2.39 -0.02 1.98 16 51 H 0.08 2.37 6.83 -2.39 -0.02 2.35 16 Total: -1.00 -77.38 389.41 3.63 -73.75 By element: Atomic # 1 Polarization: 18.62 SS G_CDS: 0.83 Total: 19.45 kcal Atomic # 6 Polarization: 0.31 SS G_CDS: 6.30 Total: 6.61 kcal Atomic # 7 Polarization: -91.99 SS G_CDS: -4.95 Total: -96.94 kcal Atomic # 8 Polarization: -48.74 SS G_CDS: -0.23 Total: -48.97 kcal Atomic # 14 Polarization: 44.42 SS G_CDS: 1.67 Total: 46.09 kcal Total: -77.38 3.63 -73.75 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000495105655.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.607 kcal (2) G-P(sol) polarization free energy of solvation -77.376 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -143.983 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.626 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.750 kcal (6) G-S(sol) free energy of system = (1) + (5) -140.357 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds