Wall clock time and date at job start Tue Mar 31 2020 21:02:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31001 * 1 3 3 C 1.50706 * 119.99729 * 2 1 4 4 N 1.46496 * 109.47106 * 124.99600 * 3 2 1 5 5 C 1.46502 * 120.00058 * 89.99968 * 4 3 2 6 6 C 1.50700 * 109.47259 * 89.99796 * 5 4 3 7 7 H 1.08001 * 119.99956 * 359.97438 * 6 5 4 8 8 C 1.37876 * 120.00002 * 180.02562 * 6 5 4 9 9 N 1.31514 * 120.00061 * 359.97438 * 8 6 5 10 10 Si 1.86799 * 119.99903 * 179.97438 * 8 6 5 11 11 H 1.48502 * 109.47134 * 89.99960 * 10 8 6 12 12 H 1.48502 * 109.47450 * 209.99546 * 10 8 6 13 13 H 1.48495 * 109.47412 * 330.00058 * 10 8 6 14 14 C 1.34779 * 120.00216 * 269.99787 * 4 3 2 15 15 O 1.21277 * 119.99995 * 180.02562 * 14 4 3 16 16 C 1.50703 * 119.99541 * 0.02562 * 14 4 3 17 17 H 1.08999 * 112.84910 * 311.19393 * 16 14 4 18 18 C 1.53771 * 113.61318 * 82.50417 * 16 14 4 19 19 C 1.53787 * 87.08107 * 139.97877 * 18 16 14 20 20 H 1.08993 * 113.61558 * 89.11382 * 19 18 16 21 21 N 1.46499 * 113.61416 * 220.01742 * 19 18 16 22 22 C 1.34776 * 120.00415 * 252.49688 * 21 19 18 23 23 O 1.21512 * 119.99198 * 0.02562 * 22 21 19 24 24 O 1.34630 * 120.00410 * 179.97438 * 22 21 19 25 25 C 1.45202 * 117.00274 * 179.97438 * 24 22 21 26 26 C 1.52996 * 109.46847 * 60.00171 * 25 24 22 27 27 C 1.53001 * 109.47195 * 180.02562 * 25 24 22 28 28 C 1.53002 * 109.46939 * 300.00556 * 25 24 22 29 29 C 1.53783 * 113.60939 * 180.02562 * 16 14 4 30 30 H 1.07997 * 120.00202 * 0.02562 * 1 2 3 31 31 H 1.08002 * 119.99479 * 180.02562 * 1 2 3 32 32 H 1.07997 * 120.00202 * 179.97438 * 2 1 3 33 33 H 1.09001 * 109.46953 * 244.99339 * 3 2 1 34 34 H 1.09000 * 109.47318 * 4.98937 * 3 2 1 35 35 H 1.09002 * 109.47278 * 209.99857 * 5 4 3 36 36 H 1.09000 * 109.47206 * 329.99759 * 5 4 3 37 37 H 0.96999 * 119.99696 * 180.02562 * 9 8 6 38 38 H 1.09001 * 113.61542 * 254.52538 * 18 16 14 39 39 H 1.09005 * 113.61732 * 25.42936 * 18 16 14 40 40 H 0.97003 * 119.99571 * 72.49705 * 21 19 18 41 41 H 1.09002 * 109.47542 * 60.00073 * 26 25 24 42 42 H 1.08999 * 109.47450 * 180.02562 * 26 25 24 43 43 H 1.09003 * 109.47263 * 299.99798 * 26 25 24 44 44 H 1.09003 * 109.46827 * 60.00747 * 27 25 24 45 45 H 1.08997 * 109.46904 * 179.97438 * 27 25 24 46 46 H 1.08992 * 109.47324 * 300.00312 * 27 25 24 47 47 H 1.08999 * 109.47290 * 59.99568 * 28 25 24 48 48 H 1.09003 * 109.46910 * 179.97438 * 28 25 24 49 49 H 1.09000 * 109.46902 * 299.99270 * 28 25 24 50 50 H 1.08998 * 113.61606 * 334.56533 * 29 16 14 51 51 H 1.08999 * 113.61261 * 105.47084 * 29 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3052 0.0000 4 7 2.9936 1.3321 1.1314 5 6 4.3589 0.8259 0.9696 6 6 5.2615 1.9482 0.5260 7 1 4.8584 2.9393 0.3790 8 6 6.6016 1.7095 0.3069 9 7 7.0923 0.5024 0.4855 10 14 7.7203 3.1005 -0.2435 11 1 8.2905 3.7783 0.9484 12 1 8.8216 2.5508 -1.0744 13 1 6.9383 4.0782 -1.0421 14 6 2.5935 1.8225 2.3214 15 8 3.3637 1.8452 3.2579 16 6 1.1889 2.3427 2.4880 17 1 0.8962 3.0321 1.6961 18 6 0.1524 1.2405 2.7622 19 6 -0.4928 2.2071 3.7694 20 1 -1.2467 2.8587 3.3278 21 7 -0.9523 1.5541 4.9977 22 6 -2.2711 1.3852 5.2183 23 8 -3.0789 1.7741 4.3982 24 8 -2.6934 0.7846 6.3469 25 6 -4.1277 0.6370 6.5181 26 6 -4.6948 -0.2002 5.3700 27 6 -4.4132 -0.0617 7.8490 28 6 -4.7863 2.0180 6.5160 29 6 0.8901 2.8672 3.9024 30 1 -0.5400 0.9353 -0.0004 31 1 -0.5399 -0.9354 0.0004 32 1 1.8500 -0.9353 0.0004 33 1 2.6214 1.4026 -0.9313 34 1 1.3585 2.1317 0.0894 35 1 4.7140 0.4281 1.9202 36 1 4.3667 0.0352 0.2193 37 1 8.0352 0.3346 0.3317 38 1 -0.4824 1.0151 1.9052 39 1 0.5755 0.3479 3.2231 40 1 -0.3073 1.2434 5.6522 41 1 -4.2256 -1.1841 5.3714 42 1 -5.7716 -0.3107 5.4983 43 1 -4.4915 0.2980 4.4221 44 1 -4.0092 0.5353 8.6667 45 1 -5.4899 -0.1721 7.9778 46 1 -3.9439 -1.0454 7.8510 47 1 -4.5829 2.5162 5.5681 48 1 -5.8631 1.9072 6.6441 49 1 -4.3823 2.6145 7.3340 50 1 1.5151 2.4195 4.6751 51 1 0.8509 3.9546 3.9656 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000496418412.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:02:40 Heat of formation + Delta-G solvation = -76.777879 kcal Electronic energy + Delta-G solvation = -30171.180749 eV Core-core repulsion = 26072.200630 eV Total energy + Delta-G solvation = -4098.980119 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.204 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.01476 -40.05446 -38.04605 -36.71589 -35.68484 -34.48915 -33.40044 -32.98427 -32.05830 -28.00332 -27.69536 -27.63929 -26.27967 -25.68399 -25.14102 -23.24842 -22.04000 -20.50293 -20.13161 -19.76009 -18.43573 -18.01287 -17.20870 -16.52765 -16.43439 -16.26764 -15.68011 -15.28368 -14.99563 -14.74479 -14.64437 -14.45494 -14.12544 -13.92608 -13.62351 -13.13286 -12.85890 -12.79447 -12.66799 -12.44790 -12.36523 -12.19000 -12.16796 -12.13197 -11.72697 -11.68849 -11.57268 -11.31218 -11.14645 -11.06655 -11.01773 -10.82555 -10.61361 -10.58075 -10.48554 -10.19131 -10.16244 -9.66314 -9.43431 -9.04399 -8.79804 -8.44491 -7.69773 -6.05603 -4.10323 2.03277 2.39517 2.70058 3.30409 3.33386 3.36784 3.40749 3.90247 4.10089 4.42860 4.43845 4.47665 4.48132 4.56594 4.62557 4.83546 4.86541 5.15574 5.17540 5.22441 5.25203 5.27855 5.30372 5.39997 5.42420 5.47931 5.55072 5.58266 5.67137 5.69289 5.71531 5.80005 5.91901 5.97788 5.99740 6.02305 6.04377 6.14220 6.18434 6.37383 6.48143 6.76177 6.86855 7.06413 7.32258 7.42744 7.52662 7.90839 8.22033 8.26085 8.40753 8.88875 9.08191 9.54918 11.02457 Molecular weight = 338.20amu Principal moments of inertia in cm(-1) A = 0.022547 B = 0.002255 C = 0.002167 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1241.577308 B =12414.941409 C =12918.267579 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.156 4.156 3 C 0.136 3.864 4 N -0.591 5.591 5 C 0.245 3.755 6 C -0.526 4.526 7 H 0.057 0.943 8 C 0.061 3.939 9 N -0.895 5.895 10 Si 0.898 3.102 11 H -0.280 1.280 12 H -0.286 1.286 13 H -0.274 1.274 14 C 0.519 3.481 15 O -0.540 6.540 16 C -0.135 4.135 17 H 0.111 0.889 18 C -0.136 4.136 19 C 0.137 3.863 20 H 0.120 0.880 21 N -0.697 5.697 22 C 0.650 3.350 23 O -0.571 6.571 24 O -0.366 6.366 25 C 0.136 3.864 26 C -0.183 4.183 27 C -0.141 4.141 28 C -0.183 4.183 29 C -0.122 4.122 30 H 0.097 0.903 31 H 0.094 0.906 32 H 0.110 0.890 33 H 0.090 0.910 34 H 0.071 0.929 35 H 0.043 0.957 36 H 0.032 0.968 37 H 0.263 0.737 38 H 0.089 0.911 39 H 0.088 0.912 40 H 0.408 0.592 41 H 0.059 0.941 42 H 0.069 0.931 43 H 0.089 0.911 44 H 0.066 0.934 45 H 0.079 0.921 46 H 0.067 0.933 47 H 0.088 0.912 48 H 0.069 0.931 49 H 0.059 0.941 50 H 0.102 0.898 51 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.163 -0.295 8.502 25.617 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C -0.175 4.175 3 C 0.012 3.988 4 N -0.322 5.322 5 C 0.126 3.874 6 C -0.564 4.564 7 H 0.075 0.925 8 C -0.141 4.141 9 N -0.534 5.534 10 Si 0.726 3.274 11 H -0.206 1.206 12 H -0.212 1.212 13 H -0.199 1.199 14 C 0.306 3.694 15 O -0.418 6.418 16 C -0.157 4.157 17 H 0.129 0.871 18 C -0.175 4.175 19 C 0.033 3.967 20 H 0.138 0.862 21 N -0.354 5.354 22 C 0.404 3.596 23 O -0.461 6.461 24 O -0.281 6.281 25 C 0.099 3.901 26 C -0.241 4.241 27 C -0.198 4.198 28 C -0.240 4.240 29 C -0.160 4.160 30 H 0.115 0.885 31 H 0.112 0.888 32 H 0.128 0.872 33 H 0.109 0.891 34 H 0.089 0.911 35 H 0.061 0.939 36 H 0.050 0.950 37 H 0.073 0.927 38 H 0.107 0.893 39 H 0.107 0.893 40 H 0.243 0.757 41 H 0.078 0.922 42 H 0.088 0.912 43 H 0.107 0.893 44 H 0.085 0.915 45 H 0.098 0.902 46 H 0.086 0.914 47 H 0.107 0.893 48 H 0.088 0.912 49 H 0.078 0.922 50 H 0.120 0.880 51 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -24.018 -0.226 8.619 25.518 hybrid contribution 0.982 0.479 -0.197 1.111 sum -23.035 0.253 8.421 24.528 Atomic orbital electron populations 1.23733 0.95723 1.01477 1.02498 1.23498 0.96019 0.99824 0.98166 1.20582 0.92286 0.94186 0.91754 1.48180 1.14298 1.60705 1.08974 1.19290 0.75366 0.94549 0.98160 1.21426 0.93420 0.95934 1.45668 0.92451 1.24939 0.97938 0.95777 0.95492 1.69933 1.14085 1.20178 1.49177 0.86501 0.80240 0.82077 0.78609 1.20560 1.21172 1.19927 1.19963 0.88014 0.78462 0.83010 1.90658 1.55141 1.56260 1.39714 1.22515 0.94446 0.99676 0.99029 0.87144 1.23614 0.96666 0.97429 0.99770 1.22667 0.95588 0.95061 0.83364 0.86232 1.44856 1.03950 1.62783 1.23857 1.18164 0.83978 0.77080 0.80420 1.90880 1.53173 1.54900 1.47100 1.86312 1.28002 1.73699 1.40123 1.22049 0.75248 0.96319 0.96457 1.22515 1.01260 1.00121 1.00168 1.21862 1.02242 1.01015 0.94709 1.22516 1.00850 0.96116 1.04550 1.23262 0.94351 1.01267 0.97125 0.88530 0.88764 0.87230 0.89138 0.91051 0.93924 0.95044 0.92728 0.89303 0.89322 0.75699 0.92161 0.91250 0.89266 0.91491 0.90203 0.91443 0.89320 0.91235 0.92221 0.87968 0.90237 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -2.18 11.75 29.01 0.34 -1.84 16 2 C -0.16 -2.13 9.36 -36.02 -0.34 -2.46 16 3 C 0.14 2.13 5.65 -5.19 -0.03 2.10 16 4 N -0.59 -12.05 2.44 -176.43 -0.43 -12.48 16 5 C 0.25 6.29 5.16 -5.19 -0.03 6.26 16 6 C -0.53 -14.69 9.39 -34.44 -0.32 -15.02 16 7 H 0.06 1.60 7.81 -52.49 -0.41 1.19 16 8 C 0.06 1.72 5.46 -17.82 -0.10 1.62 16 9 N -0.89 -26.41 13.29 55.43 0.74 -25.67 16 10 Si 0.90 21.73 29.54 -169.99 -5.02 16.71 16 11 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 12 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 13 H -0.27 -6.47 7.11 56.52 0.40 -6.07 16 14 C 0.52 10.29 7.20 -10.98 -0.08 10.21 16 15 O -0.54 -13.08 15.48 5.56 0.09 -12.99 16 16 C -0.13 -1.87 2.96 -90.96 -0.27 -2.14 16 17 H 0.11 1.33 6.94 -51.93 -0.36 0.97 16 18 C -0.14 -1.64 6.42 -25.92 -0.17 -1.80 16 19 C 0.14 1.51 4.24 -67.10 -0.28 1.23 16 20 H 0.12 1.32 7.47 -51.93 -0.39 0.93 16 21 N -0.70 -7.60 5.36 -57.91 -0.31 -7.91 16 22 C 0.65 7.92 8.06 54.05 0.44 8.36 16 23 O -0.57 -7.89 11.48 -19.28 -0.22 -8.11 16 24 O -0.37 -4.10 9.94 -40.30 -0.40 -4.50 16 25 C 0.14 1.23 1.13 -90.62 -0.10 1.13 16 26 C -0.18 -1.63 8.37 37.16 0.31 -1.32 16 27 C -0.14 -0.92 8.85 37.16 0.33 -0.59 16 28 C -0.18 -1.59 8.37 37.16 0.31 -1.28 16 29 C -0.12 -1.50 7.16 -25.90 -0.19 -1.68 16 30 H 0.10 0.95 7.08 -52.49 -0.37 0.58 16 31 H 0.09 0.95 8.06 -52.49 -0.42 0.53 16 32 H 0.11 1.60 8.06 -52.49 -0.42 1.18 16 33 H 0.09 1.49 8.07 -51.93 -0.42 1.07 16 34 H 0.07 0.93 5.87 -51.93 -0.30 0.63 16 35 H 0.04 1.24 7.42 -51.93 -0.39 0.86 16 36 H 0.03 0.82 8.07 -51.93 -0.42 0.40 16 37 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 38 H 0.09 0.99 4.90 -51.93 -0.25 0.73 16 39 H 0.09 1.19 8.09 -51.93 -0.42 0.77 16 40 H 0.41 3.94 8.84 -40.82 -0.36 3.58 16 41 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 42 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 43 H 0.09 1.00 5.88 -51.93 -0.31 0.69 16 44 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 45 H 0.08 0.38 8.14 -51.93 -0.42 -0.05 16 46 H 0.07 0.44 8.14 -51.93 -0.42 0.01 16 47 H 0.09 0.97 5.88 -51.93 -0.31 0.66 16 48 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 49 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 50 H 0.10 1.41 7.41 -51.93 -0.38 1.02 16 51 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 LS Contribution 407.66 15.07 6.14 6.14 Total: -1.00 -33.36 407.66 -8.04 -41.40 By element: Atomic # 1 Polarization: 13.10 SS G_CDS: -8.45 Total: 4.65 kcal Atomic # 6 Polarization: 2.94 SS G_CDS: -0.17 Total: 2.77 kcal Atomic # 7 Polarization: -46.06 SS G_CDS: 0.00 Total: -46.07 kcal Atomic # 8 Polarization: -25.07 SS G_CDS: -0.54 Total: -25.60 kcal Atomic # 14 Polarization: 21.73 SS G_CDS: -5.02 Total: 16.71 kcal Total LS contribution 6.14 Total: 6.14 kcal Total: -33.36 -8.04 -41.40 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000496418412.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.375 kcal (2) G-P(sol) polarization free energy of solvation -33.360 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.735 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.043 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.403 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.778 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds