Wall clock time and date at job start Tue Mar 31 2020 21:02:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31001 * 1 3 3 C 1.50706 * 119.99729 * 2 1 4 4 N 1.46496 * 109.47106 * 124.99600 * 3 2 1 5 5 C 1.46502 * 120.00058 * 89.99968 * 4 3 2 6 6 C 1.50700 * 109.47259 * 89.99796 * 5 4 3 7 7 H 1.08001 * 119.99956 * 359.97438 * 6 5 4 8 8 C 1.37876 * 120.00002 * 180.02562 * 6 5 4 9 9 N 1.31514 * 120.00061 * 359.97438 * 8 6 5 10 10 Si 1.86799 * 119.99903 * 179.97438 * 8 6 5 11 11 H 1.48502 * 109.47134 * 89.99960 * 10 8 6 12 12 H 1.48502 * 109.47450 * 209.99546 * 10 8 6 13 13 H 1.48495 * 109.47412 * 330.00058 * 10 8 6 14 14 C 1.34779 * 120.00216 * 269.99787 * 4 3 2 15 15 O 1.21277 * 119.99995 * 180.02562 * 14 4 3 16 16 C 1.50703 * 119.99541 * 0.02562 * 14 4 3 17 17 H 1.08999 * 112.84910 * 311.19393 * 16 14 4 18 18 C 1.53771 * 113.61318 * 82.50417 * 16 14 4 19 19 C 1.53787 * 87.08107 * 139.97877 * 18 16 14 20 20 H 1.08993 * 113.61558 * 89.11382 * 19 18 16 21 21 N 1.46499 * 113.61416 * 220.01742 * 19 18 16 22 22 C 1.34776 * 120.00415 * 252.49688 * 21 19 18 23 23 O 1.21512 * 119.99198 * 0.02562 * 22 21 19 24 24 O 1.34630 * 120.00410 * 179.97438 * 22 21 19 25 25 C 1.45202 * 117.00274 * 179.97438 * 24 22 21 26 26 C 1.52996 * 109.46847 * 60.00171 * 25 24 22 27 27 C 1.53001 * 109.47195 * 180.02562 * 25 24 22 28 28 C 1.53002 * 109.46939 * 300.00556 * 25 24 22 29 29 C 1.53783 * 113.60939 * 180.02562 * 16 14 4 30 30 H 1.07997 * 120.00202 * 0.02562 * 1 2 3 31 31 H 1.08002 * 119.99479 * 180.02562 * 1 2 3 32 32 H 1.07997 * 120.00202 * 179.97438 * 2 1 3 33 33 H 1.09001 * 109.46953 * 244.99339 * 3 2 1 34 34 H 1.09000 * 109.47318 * 4.98937 * 3 2 1 35 35 H 1.09002 * 109.47278 * 209.99857 * 5 4 3 36 36 H 1.09000 * 109.47206 * 329.99759 * 5 4 3 37 37 H 0.96999 * 119.99696 * 180.02562 * 9 8 6 38 38 H 1.09001 * 113.61542 * 254.52538 * 18 16 14 39 39 H 1.09005 * 113.61732 * 25.42936 * 18 16 14 40 40 H 0.97003 * 119.99571 * 72.49705 * 21 19 18 41 41 H 1.09002 * 109.47542 * 60.00073 * 26 25 24 42 42 H 1.08999 * 109.47450 * 180.02562 * 26 25 24 43 43 H 1.09003 * 109.47263 * 299.99798 * 26 25 24 44 44 H 1.09003 * 109.46827 * 60.00747 * 27 25 24 45 45 H 1.08997 * 109.46904 * 179.97438 * 27 25 24 46 46 H 1.08992 * 109.47324 * 300.00312 * 27 25 24 47 47 H 1.08999 * 109.47290 * 59.99568 * 28 25 24 48 48 H 1.09003 * 109.46910 * 179.97438 * 28 25 24 49 49 H 1.09000 * 109.46902 * 299.99270 * 28 25 24 50 50 H 1.08998 * 113.61606 * 334.56533 * 29 16 14 51 51 H 1.08999 * 113.61261 * 105.47084 * 29 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3052 0.0000 4 7 2.9936 1.3321 1.1314 5 6 4.3589 0.8259 0.9696 6 6 5.2615 1.9482 0.5260 7 1 4.8584 2.9393 0.3790 8 6 6.6016 1.7095 0.3069 9 7 7.0923 0.5024 0.4855 10 14 7.7203 3.1005 -0.2435 11 1 8.2905 3.7783 0.9484 12 1 8.8216 2.5508 -1.0744 13 1 6.9383 4.0782 -1.0421 14 6 2.5935 1.8225 2.3214 15 8 3.3637 1.8452 3.2579 16 6 1.1889 2.3427 2.4880 17 1 0.8962 3.0321 1.6961 18 6 0.1524 1.2405 2.7622 19 6 -0.4928 2.2071 3.7694 20 1 -1.2467 2.8587 3.3278 21 7 -0.9523 1.5541 4.9977 22 6 -2.2711 1.3852 5.2183 23 8 -3.0789 1.7741 4.3982 24 8 -2.6934 0.7846 6.3469 25 6 -4.1277 0.6370 6.5181 26 6 -4.6948 -0.2002 5.3700 27 6 -4.4132 -0.0617 7.8490 28 6 -4.7863 2.0180 6.5160 29 6 0.8901 2.8672 3.9024 30 1 -0.5400 0.9353 -0.0004 31 1 -0.5399 -0.9354 0.0004 32 1 1.8500 -0.9353 0.0004 33 1 2.6214 1.4026 -0.9313 34 1 1.3585 2.1317 0.0894 35 1 4.7140 0.4281 1.9202 36 1 4.3667 0.0352 0.2193 37 1 8.0352 0.3346 0.3317 38 1 -0.4824 1.0151 1.9052 39 1 0.5755 0.3479 3.2231 40 1 -0.3073 1.2434 5.6522 41 1 -4.2256 -1.1841 5.3714 42 1 -5.7716 -0.3107 5.4983 43 1 -4.4915 0.2980 4.4221 44 1 -4.0092 0.5353 8.6667 45 1 -5.4899 -0.1721 7.9778 46 1 -3.9439 -1.0454 7.8510 47 1 -4.5829 2.5162 5.5681 48 1 -5.8631 1.9072 6.6441 49 1 -4.3823 2.6145 7.3340 50 1 1.5151 2.4195 4.6751 51 1 0.8509 3.9546 3.9656 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000496418412.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:02:39 Heat of formation + Delta-G solvation = -98.349225 kcal Electronic energy + Delta-G solvation = -30172.116153 eV Core-core repulsion = 26072.200630 eV Total energy + Delta-G solvation = -4099.915523 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.204 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -41.94945 -41.27597 -39.24175 -37.69667 -37.18413 -35.35558 -35.09718 -34.00247 -33.65538 -29.87160 -28.30692 -28.25833 -27.50307 -26.86767 -26.48318 -24.79287 -23.26338 -21.47014 -21.18261 -20.75846 -19.65772 -19.00245 -18.61349 -18.41573 -17.49411 -17.20293 -17.10649 -16.47873 -16.36115 -16.05219 -15.65170 -15.44554 -15.31084 -15.17853 -14.51684 -14.34423 -14.23424 -14.15230 -13.64949 -13.48975 -13.46922 -13.31800 -13.08955 -12.97759 -12.86198 -12.81944 -12.76415 -12.60632 -12.43200 -12.33442 -12.20329 -12.16704 -12.09189 -12.02813 -11.70083 -11.54869 -11.34000 -11.04678 -10.67430 -10.64588 -10.20355 -9.99990 -9.43564 -8.22421 -6.37238 1.20360 1.35618 1.37186 1.39522 1.49290 1.76359 1.85500 2.35461 2.54393 3.07101 3.19938 3.42326 3.52052 3.78117 3.79894 3.81584 3.85489 3.99562 4.01566 4.13506 4.23543 4.47432 4.57711 4.61878 4.66667 4.69491 4.75623 4.79584 4.81375 4.85999 4.89626 4.92322 4.94972 4.99672 5.02760 5.08553 5.12960 5.19648 5.25368 5.33534 5.37365 5.50902 5.56935 5.61657 5.75538 5.85109 5.86116 6.06498 6.43685 6.70587 6.82836 7.28668 7.36861 7.50836 8.84657 Molecular weight = 338.20amu Principal moments of inertia in cm(-1) A = 0.022547 B = 0.002255 C = 0.002167 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1241.577308 B =12414.941409 C =12918.267579 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.186 4.186 3 C 0.135 3.865 4 N -0.597 5.597 5 C 0.262 3.738 6 C -0.540 4.540 7 H 0.055 0.945 8 C 0.005 3.995 9 N -0.930 5.930 10 Si 0.968 3.032 11 H -0.280 1.280 12 H -0.276 1.276 13 H -0.261 1.261 14 C 0.510 3.490 15 O -0.596 6.596 16 C -0.128 4.128 17 H 0.142 0.858 18 C -0.127 4.127 19 C 0.153 3.847 20 H 0.132 0.868 21 N -0.694 5.694 22 C 0.648 3.352 23 O -0.587 6.587 24 O -0.373 6.373 25 C 0.124 3.876 26 C -0.179 4.179 27 C -0.137 4.137 28 C -0.179 4.179 29 C -0.120 4.120 30 H 0.121 0.879 31 H 0.110 0.890 32 H 0.089 0.911 33 H 0.076 0.924 34 H 0.107 0.893 35 H -0.005 1.005 36 H 0.019 0.981 37 H 0.267 0.733 38 H 0.106 0.894 39 H 0.071 0.929 40 H 0.413 0.587 41 H 0.058 0.942 42 H 0.090 0.910 43 H 0.065 0.935 44 H 0.068 0.932 45 H 0.102 0.898 46 H 0.066 0.934 47 H 0.065 0.935 48 H 0.090 0.910 49 H 0.060 0.940 50 H 0.082 0.918 51 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.088 1.008 8.224 28.327 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.206 4.206 3 C 0.013 3.987 4 N -0.326 5.326 5 C 0.140 3.860 6 C -0.579 4.579 7 H 0.074 0.926 8 C -0.194 4.194 9 N -0.569 5.569 10 Si 0.792 3.208 11 H -0.206 1.206 12 H -0.201 1.201 13 H -0.185 1.185 14 C 0.299 3.701 15 O -0.478 6.478 16 C -0.149 4.149 17 H 0.159 0.841 18 C -0.166 4.166 19 C 0.050 3.950 20 H 0.150 0.850 21 N -0.352 5.352 22 C 0.402 3.598 23 O -0.478 6.478 24 O -0.288 6.288 25 C 0.087 3.913 26 C -0.237 4.237 27 C -0.194 4.194 28 C -0.236 4.236 29 C -0.158 4.158 30 H 0.139 0.861 31 H 0.128 0.872 32 H 0.107 0.893 33 H 0.094 0.906 34 H 0.125 0.875 35 H 0.013 0.987 36 H 0.037 0.963 37 H 0.075 0.925 38 H 0.124 0.876 39 H 0.090 0.910 40 H 0.249 0.751 41 H 0.077 0.923 42 H 0.109 0.891 43 H 0.084 0.916 44 H 0.087 0.913 45 H 0.121 0.879 46 H 0.085 0.915 47 H 0.084 0.916 48 H 0.109 0.891 49 H 0.079 0.921 50 H 0.101 0.899 51 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -26.990 1.069 8.322 28.264 hybrid contribution 1.804 0.000 -0.074 1.805 sum -25.186 1.068 8.248 26.524 Atomic orbital electron populations 1.24004 0.94476 1.03373 0.97740 1.23168 0.96890 0.97988 1.02505 1.20803 0.91882 0.96703 0.89297 1.48194 1.13101 1.60345 1.10985 1.18698 0.78475 0.93855 0.94933 1.21712 0.94278 0.96208 1.45679 0.92648 1.25887 0.99609 0.98420 0.95445 1.70059 1.14603 1.22287 1.49987 0.85408 0.78235 0.78915 0.78218 1.20615 1.20115 1.18455 1.21041 0.90036 0.77283 0.81758 1.90623 1.57361 1.58372 1.41418 1.22591 0.90398 1.00935 1.01011 0.84081 1.23561 0.95953 0.96480 1.00585 1.22493 0.95004 0.94413 0.83128 0.85032 1.44829 1.03898 1.62554 1.23919 1.18260 0.84008 0.76981 0.80544 1.90875 1.53624 1.55608 1.47691 1.86326 1.29555 1.73371 1.39566 1.22415 0.74162 0.96883 0.97797 1.22470 1.02682 0.99592 0.98912 1.21891 1.03776 1.00592 0.93159 1.22467 1.02228 0.95661 1.03224 1.23236 0.94733 1.02313 0.95545 0.86071 0.87181 0.89300 0.90583 0.87524 0.98692 0.96347 0.92463 0.87584 0.91000 0.75131 0.92298 0.89107 0.91591 0.91336 0.87905 0.91493 0.91641 0.89115 0.92110 0.89896 0.88529 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.01 11.75 67.78 0.80 -2.21 16 2 C -0.19 -4.93 9.36 25.65 0.24 -4.69 16 3 C 0.14 4.16 5.65 85.64 0.48 4.64 16 4 N -0.60 -25.10 2.44 -830.49 -2.03 -27.13 16 5 C 0.26 14.25 5.16 85.63 0.44 14.70 16 6 C -0.54 -31.24 9.39 25.60 0.24 -31.00 16 7 H 0.06 3.15 7.81 -2.91 -0.02 3.12 16 8 C 0.01 0.30 5.46 84.65 0.46 0.76 16 9 N -0.93 -56.77 13.29 21.45 0.28 -56.49 16 10 Si 0.97 45.09 29.54 68.60 2.03 47.11 16 11 H -0.28 -13.02 7.11 99.48 0.71 -12.32 16 12 H -0.28 -12.33 7.11 99.48 0.71 -11.62 16 13 H -0.26 -11.46 7.11 99.48 0.71 -10.75 16 14 C 0.51 20.65 7.20 87.66 0.63 21.28 16 15 O -0.60 -30.40 15.48 -3.02 -0.05 -30.44 16 16 C -0.13 -3.34 2.96 -11.02 -0.03 -3.37 16 17 H 0.14 2.85 6.94 -2.39 -0.02 2.84 16 18 C -0.13 -2.80 6.42 31.12 0.20 -2.60 16 19 C 0.15 3.06 4.24 45.53 0.19 3.26 16 20 H 0.13 2.45 7.47 -2.39 -0.02 2.43 16 21 N -0.69 -14.26 5.36 -567.56 -3.04 -17.30 16 22 C 0.65 14.96 8.06 129.79 1.05 16.01 16 23 O -0.59 -15.35 11.48 19.80 0.23 -15.12 16 24 O -0.37 -7.91 9.94 -55.39 -0.55 -8.46 16 25 C 0.12 2.02 1.13 -10.79 -0.01 2.01 16 26 C -0.18 -2.88 8.37 71.98 0.60 -2.28 16 27 C -0.14 -1.48 8.85 71.98 0.64 -0.84 16 28 C -0.18 -2.78 8.37 71.98 0.60 -2.18 16 29 C -0.12 -2.80 7.16 31.13 0.22 -2.57 16 30 H 0.12 1.76 7.08 -2.91 -0.02 1.74 16 31 H 0.11 1.82 8.06 -2.91 -0.02 1.80 16 32 H 0.09 2.70 8.06 -2.91 -0.02 2.68 16 33 H 0.08 2.53 8.07 -2.39 -0.02 2.51 16 34 H 0.11 2.48 5.87 -2.39 -0.01 2.46 16 35 H -0.01 -0.32 7.42 -2.39 -0.02 -0.34 16 36 H 0.02 1.03 8.07 -2.39 -0.02 1.01 16 37 H 0.27 15.25 8.31 -92.71 -0.77 14.48 16 38 H 0.11 1.96 4.90 -2.39 -0.01 1.95 16 39 H 0.07 1.88 8.09 -2.38 -0.02 1.86 16 40 H 0.41 7.72 8.84 -92.71 -0.82 6.90 16 41 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 42 H 0.09 1.02 8.14 -2.39 -0.02 1.00 16 43 H 0.07 1.40 5.88 -2.39 -0.01 1.38 16 44 H 0.07 0.72 8.14 -2.39 -0.02 0.70 16 45 H 0.10 0.63 8.14 -2.39 -0.02 0.61 16 46 H 0.07 0.73 8.14 -2.39 -0.02 0.72 16 47 H 0.06 1.36 5.88 -2.39 -0.01 1.34 16 48 H 0.09 0.99 8.14 -2.39 -0.02 0.97 16 49 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 50 H 0.08 2.31 7.41 -2.39 -0.02 2.29 16 51 H 0.10 1.94 8.14 -2.39 -0.02 1.92 16 Total: -1.00 -77.15 407.66 3.73 -73.42 By element: Atomic # 1 Polarization: 23.41 SS G_CDS: 0.10 Total: 23.51 kcal Atomic # 6 Polarization: 4.15 SS G_CDS: 6.75 Total: 10.90 kcal Atomic # 7 Polarization: -96.13 SS G_CDS: -4.78 Total: -100.91 kcal Atomic # 8 Polarization: -53.66 SS G_CDS: -0.37 Total: -54.03 kcal Atomic # 14 Polarization: 45.09 SS G_CDS: 2.03 Total: 47.11 kcal Total: -77.15 3.73 -73.42 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000496418412.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.933 kcal (2) G-P(sol) polarization free energy of solvation -77.148 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.081 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.732 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.416 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.349 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds