Wall clock time and date at job start Tue Mar 31 2020 21:00:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 O 1.45198 * 109.46691 * 2 1 4 4 C 1.34641 * 116.99779 * 179.97438 * 3 2 1 5 5 O 1.21517 * 119.99667 * 0.02562 * 4 3 2 6 6 N 1.34771 * 120.00216 * 179.97438 * 4 3 2 7 7 C 1.46929 * 120.62912 * 0.02967 * 6 4 3 8 8 C 1.53192 * 108.77454 * 126.36844 * 7 6 4 9 9 C 1.53041 * 109.31741 * 54.63445 * 8 7 6 10 10 C 1.53047 * 109.53607 * 298.63523 * 9 8 7 11 11 H 1.09001 * 109.52071 * 301.39924 * 10 9 8 12 12 C 1.50696 * 109.49839 * 181.31434 * 10 9 8 13 13 O 1.21279 * 119.99707 * 0.16286 * 12 10 9 14 14 N 1.34779 * 119.99770 * 180.16031 * 12 10 9 15 15 C 1.46498 * 119.99667 * 180.02562 * 14 12 10 16 16 H 1.09006 * 110.01815 * 326.39261 * 15 14 12 17 17 C 1.53876 * 110.07467 * 87.80913 * 15 14 12 18 18 C 1.54266 * 106.59821 * 119.30582 * 17 15 14 19 19 C 1.54888 * 104.19633 * 23.61170 * 18 17 15 20 20 H 1.09000 * 110.91000 * 80.44417 * 19 18 17 21 21 C 1.50696 * 110.75792 * 203.74502 * 19 18 17 22 22 H 1.08000 * 120.00217 * 78.61833 * 21 19 18 23 23 C 1.37887 * 119.99897 * 258.61964 * 21 19 18 24 24 N 1.31510 * 120.00009 * 184.70302 * 23 21 19 25 25 Si 1.86807 * 119.99834 * 4.70874 * 23 21 19 26 26 H 1.48504 * 109.46670 * 275.13179 * 25 23 21 27 27 H 1.48501 * 109.47233 * 35.12992 * 25 23 21 28 28 H 1.48490 * 109.47061 * 155.13605 * 25 23 21 29 29 C 1.54259 * 110.03226 * 205.00162 * 15 14 12 30 30 C 1.46927 * 120.63172 * 179.97438 * 6 4 3 31 31 H 1.08999 * 109.46969 * 60.00037 * 1 2 3 32 32 H 1.08998 * 109.46897 * 179.97438 * 1 2 3 33 33 H 1.09001 * 109.47241 * 300.00112 * 1 2 3 34 34 H 1.08994 * 109.47015 * 239.99565 * 2 1 3 35 35 H 1.08998 * 109.46458 * 119.99166 * 2 1 3 36 36 H 1.09003 * 109.58713 * 246.15126 * 7 6 4 37 37 H 1.08990 * 109.58708 * 6.57922 * 7 6 4 38 38 H 1.09005 * 109.49868 * 174.58485 * 8 7 6 39 39 H 1.09004 * 109.49585 * 294.68174 * 8 7 6 40 40 H 1.08998 * 109.45967 * 178.61713 * 9 8 7 41 41 H 1.08995 * 109.46227 * 58.65126 * 9 8 7 42 42 H 0.96993 * 120.00236 * 0.02562 * 14 12 10 43 43 H 1.08996 * 110.03446 * 238.59279 * 17 15 14 44 44 H 1.09007 * 110.02790 * 359.97438 * 17 15 14 45 45 H 1.08997 * 110.48538 * 264.93689 * 18 17 15 46 46 H 1.08997 * 110.48878 * 142.29030 * 18 17 15 47 47 H 0.96998 * 119.99557 * 179.97438 * 24 23 21 48 48 H 1.08999 * 110.48640 * 98.38128 * 29 15 14 49 49 H 1.08994 * 110.48977 * 335.73589 * 29 15 14 50 50 H 1.09005 * 109.58391 * 113.84812 * 30 6 4 51 51 H 1.08999 * 109.58468 * 353.42871 * 30 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0139 1.3690 0.0000 4 6 3.3487 1.5454 0.0005 5 8 4.0889 0.5817 0.0005 6 7 3.8639 2.7908 0.0000 7 6 2.9817 3.9658 -0.0004 8 6 3.3734 4.8769 1.1671 9 6 4.8640 5.2101 1.0712 10 6 5.6838 3.9214 1.1681 11 1 5.4637 3.4197 2.1105 12 6 7.1524 4.2535 1.1060 13 8 7.5090 5.4077 0.9981 14 7 8.0695 3.2679 1.1705 15 6 9.4972 3.5909 1.1106 16 1 9.6579 4.4533 0.4636 17 6 10.0318 3.8850 2.5232 18 6 11.1323 2.8411 2.8041 19 6 11.6088 2.4035 1.3968 20 1 12.3073 3.1288 0.9796 21 6 12.2319 1.0323 1.4464 22 1 11.6037 0.1547 1.4860 23 6 13.6042 0.8981 1.4414 24 7 14.1477 -0.2984 1.3912 25 14 14.6914 2.4158 1.5060 26 1 14.8782 2.9496 0.1328 27 1 14.0479 3.4498 2.3557 28 1 16.0121 2.0546 2.0805 29 6 10.2915 2.3786 0.5824 30 6 5.3183 2.9994 0.0012 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 -0.3634 0.5138 0.8900 34 1 1.8933 -0.5139 -0.8899 35 1 1.8932 -0.5137 0.8901 36 1 3.0943 4.5070 -0.9399 37 1 1.9466 3.6456 0.1174 38 1 2.7913 5.7974 1.1215 39 1 3.1746 4.3665 2.1095 40 1 5.1400 5.8782 1.8870 41 1 5.0664 5.6983 0.1180 42 1 7.7842 2.3449 1.2564 43 1 10.4518 4.8901 2.5618 44 1 9.2288 3.7880 3.2540 45 1 10.7217 1.9913 3.3492 46 1 11.9531 3.2926 3.3615 47 1 15.1131 -0.3927 1.3873 48 1 10.4987 2.4926 -0.4816 49 1 9.7452 1.4540 0.7687 50 1 5.6218 3.4615 -0.9382 51 1 5.8246 2.0415 0.1199 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000497007849.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:00:25 Heat of formation + Delta-G solvation = -138.905101 kcal Electronic energy + Delta-G solvation = -30006.501026 eV Core-core repulsion = 25904.826868 eV Total energy + Delta-G solvation = -4101.674157 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.204 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.07946 -40.02760 -38.32510 -37.19592 -36.53904 -33.78621 -33.39549 -32.30025 -31.89192 -31.43070 -28.49432 -27.53673 -26.03106 -24.72040 -23.57662 -23.39382 -22.01828 -20.83110 -20.02426 -19.67314 -19.04141 -18.46698 -17.32060 -17.13006 -17.03299 -16.73828 -15.83296 -15.61707 -15.13126 -14.93834 -14.79328 -14.48777 -14.09517 -13.87516 -13.81214 -13.65831 -13.43781 -13.18764 -12.89846 -12.69873 -12.47688 -12.34717 -12.29168 -12.01990 -11.85779 -11.52416 -11.36414 -11.30249 -11.12415 -10.99242 -10.96868 -10.85032 -10.74778 -10.38707 -10.17851 -10.11823 -9.76604 -9.68077 -9.48419 -9.13656 -9.08580 -8.75746 -8.50836 -6.08335 -4.06342 1.72781 2.49922 2.70614 3.27767 3.30565 3.38126 3.41144 3.48151 4.33197 4.40648 4.42411 4.52779 4.57473 4.59082 4.61316 4.81746 4.91574 4.97346 5.05714 5.08755 5.14650 5.25204 5.36161 5.38005 5.40087 5.42139 5.48468 5.54097 5.56602 5.59646 5.61191 5.83383 5.99036 6.01481 6.04966 6.13359 6.16628 6.31650 6.44235 6.53930 6.64875 6.70064 6.87726 6.96347 7.03709 7.23681 7.38987 7.67292 7.76660 7.96293 8.32741 8.52928 8.96666 9.55301 11.04855 Molecular weight = 338.20amu Principal moments of inertia in cm(-1) A = 0.015799 B = 0.002384 C = 0.002124 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1771.829651 B =11739.859274 C =13179.171395 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.081 3.919 3 O -0.370 6.370 4 C 0.650 3.350 5 O -0.567 6.567 6 N -0.593 5.593 7 C 0.110 3.890 8 C -0.136 4.136 9 C -0.100 4.100 10 C -0.124 4.124 11 H 0.101 0.899 12 C 0.517 3.483 13 O -0.541 6.541 14 N -0.716 5.716 15 C 0.134 3.866 16 H 0.083 0.917 17 C -0.133 4.133 18 C -0.122 4.122 19 C 0.018 3.982 20 H 0.037 0.963 21 C -0.507 4.507 22 H 0.073 0.927 23 C 0.069 3.931 24 N -0.901 5.901 25 Si 0.878 3.122 26 H -0.277 1.277 27 H -0.265 1.265 28 H -0.290 1.290 29 C -0.115 4.115 30 C 0.137 3.863 31 H 0.066 0.934 32 H 0.082 0.918 33 H 0.066 0.934 34 H 0.071 0.929 35 H 0.071 0.929 36 H 0.073 0.927 37 H 0.093 0.907 38 H 0.082 0.918 39 H 0.069 0.931 40 H 0.077 0.923 41 H 0.074 0.926 42 H 0.400 0.600 43 H 0.057 0.943 44 H 0.054 0.946 45 H 0.061 0.939 46 H 0.050 0.950 47 H 0.264 0.736 48 H 0.059 0.941 49 H 0.067 0.933 50 H 0.080 0.920 51 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.688 7.637 -2.098 29.761 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.006 3.994 3 O -0.285 6.285 4 C 0.405 3.595 5 O -0.456 6.456 6 N -0.333 5.333 7 C -0.013 4.013 8 C -0.174 4.174 9 C -0.138 4.138 10 C -0.147 4.147 11 H 0.119 0.881 12 C 0.302 3.698 13 O -0.418 6.418 14 N -0.366 5.366 15 C 0.031 3.969 16 H 0.101 0.899 17 C -0.171 4.171 18 C -0.161 4.161 19 C -0.002 4.002 20 H 0.055 0.945 21 C -0.544 4.544 22 H 0.091 0.909 23 C -0.133 4.133 24 N -0.538 5.538 25 Si 0.706 3.294 26 H -0.203 1.203 27 H -0.189 1.189 28 H -0.217 1.217 29 C -0.154 4.154 30 C 0.015 3.985 31 H 0.085 0.915 32 H 0.101 0.899 33 H 0.085 0.915 34 H 0.089 0.911 35 H 0.090 0.910 36 H 0.091 0.909 37 H 0.112 0.888 38 H 0.101 0.899 39 H 0.087 0.913 40 H 0.095 0.905 41 H 0.093 0.907 42 H 0.235 0.765 43 H 0.076 0.924 44 H 0.073 0.927 45 H 0.080 0.920 46 H 0.069 0.931 47 H 0.073 0.927 48 H 0.078 0.922 49 H 0.085 0.915 50 H 0.098 0.902 51 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -28.073 7.987 -2.192 29.269 hybrid contribution 0.607 0.156 0.203 0.659 sum -27.465 8.143 -1.989 28.716 Atomic orbital electron populations 1.21828 0.92514 1.03155 1.03454 1.22980 0.94781 0.78626 1.03008 1.86211 1.21976 1.33274 1.87016 1.17967 0.81276 0.83905 0.76369 1.91035 1.59727 1.39213 1.55592 1.46844 1.07069 1.03234 1.76203 1.21805 0.94292 0.85963 0.99193 1.21974 0.96780 0.99911 0.98709 1.21346 0.92892 0.95447 1.04125 1.21760 0.93018 0.98848 1.01038 0.88056 1.20270 0.87359 0.85735 0.76439 1.90691 1.81757 1.19837 1.49502 1.46411 1.07059 1.09769 1.73370 1.21899 0.78054 0.99586 0.97409 0.89899 1.22575 0.98986 0.99791 0.95780 1.22691 0.96043 0.96615 1.00719 1.19996 0.92371 0.97166 0.90647 0.94499 1.20967 0.91781 0.91204 1.50491 0.90868 1.25098 0.98145 0.95685 0.94341 1.69909 1.11286 1.22175 1.50454 0.86848 0.79827 0.83939 0.78804 1.20253 1.18944 1.21679 1.22703 0.97725 0.95202 0.99738 1.21568 0.78017 1.00991 0.97919 0.91504 0.89928 0.91488 0.91056 0.91037 0.90872 0.88845 0.89930 0.91268 0.90463 0.90708 0.76510 0.92391 0.92692 0.91993 0.93147 0.92666 0.92177 0.91461 0.90151 0.87812 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.71 10.29 37.16 0.38 -0.32 16 2 C 0.08 0.61 6.19 37.16 0.23 0.84 16 3 O -0.37 -3.56 8.86 -40.33 -0.36 -3.92 16 4 C 0.65 7.57 8.43 54.05 0.46 8.03 16 5 O -0.57 -8.42 15.55 -19.29 -0.30 -8.72 16 6 N -0.59 -5.69 2.97 -178.58 -0.53 -6.23 16 7 C 0.11 0.75 6.45 -3.71 -0.02 0.72 16 8 C -0.14 -0.86 6.08 -26.61 -0.16 -1.03 16 9 C -0.10 -0.88 4.46 -26.69 -0.12 -1.00 16 10 C -0.12 -1.24 2.68 -91.67 -0.25 -1.49 16 11 H 0.10 0.96 8.14 -51.93 -0.42 0.54 16 12 C 0.52 6.99 7.15 -10.99 -0.08 6.91 16 13 O -0.54 -9.15 15.63 5.56 0.09 -9.06 16 14 N -0.72 -9.92 4.89 -52.72 -0.26 -10.18 16 15 C 0.13 2.25 3.24 -66.82 -0.22 2.03 16 16 H 0.08 1.45 7.56 -51.93 -0.39 1.06 16 17 C -0.13 -2.31 6.59 -25.61 -0.17 -2.48 16 18 C -0.12 -2.49 6.26 -25.07 -0.16 -2.64 16 19 C 0.02 0.40 2.42 -89.78 -0.22 0.18 16 20 H 0.04 0.85 5.68 -51.93 -0.29 0.56 16 21 C -0.51 -13.81 8.93 -34.44 -0.31 -14.11 16 22 H 0.07 2.16 8.05 -52.49 -0.42 1.74 16 23 C 0.07 1.96 5.47 -17.82 -0.10 1.86 16 24 N -0.90 -27.28 13.96 55.43 0.77 -26.51 16 25 Si 0.88 21.45 26.85 -169.99 -4.56 16.89 16 26 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 27 H -0.26 -6.20 6.83 56.52 0.39 -5.82 16 28 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 29 C -0.12 -2.18 5.96 -25.07 -0.15 -2.33 16 30 C 0.14 1.36 5.57 -3.73 -0.02 1.34 16 31 H 0.07 0.30 8.14 -51.93 -0.42 -0.13 16 32 H 0.08 0.26 8.14 -51.93 -0.42 -0.16 16 33 H 0.07 0.30 8.14 -51.93 -0.42 -0.12 16 34 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 35 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 36 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 37 H 0.09 0.57 6.93 -51.93 -0.36 0.21 16 38 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 39 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 40 H 0.08 0.74 8.07 -51.93 -0.42 0.32 16 41 H 0.07 0.70 8.13 -51.93 -0.42 0.27 16 42 H 0.40 4.91 7.90 -40.82 -0.32 4.59 16 43 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 44 H 0.05 0.90 7.92 -51.92 -0.41 0.49 16 45 H 0.06 1.27 8.04 -51.93 -0.42 0.86 16 46 H 0.05 1.04 7.87 -51.93 -0.41 0.63 16 47 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 48 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 49 H 0.07 1.26 7.63 -51.93 -0.40 0.86 16 50 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 51 H 0.10 1.15 6.60 -51.93 -0.34 0.81 16 LS Contribution 402.31 15.07 6.06 6.06 Total: -1.00 -33.48 402.31 -8.82 -42.29 By element: Atomic # 1 Polarization: 11.68 SS G_CDS: -8.83 Total: 2.85 kcal Atomic # 6 Polarization: -2.59 SS G_CDS: -0.90 Total: -3.48 kcal Atomic # 7 Polarization: -42.89 SS G_CDS: -0.02 Total: -42.91 kcal Atomic # 8 Polarization: -21.13 SS G_CDS: -0.57 Total: -21.70 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -4.56 Total: 16.89 kcal Total LS contribution 6.06 Total: 6.06 kcal Total: -33.48 -8.82 -42.29 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000497007849.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -96.613 kcal (2) G-P(sol) polarization free energy of solvation -33.477 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -130.090 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.815 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.292 kcal (6) G-S(sol) free energy of system = (1) + (5) -138.905 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds