Wall clock time and date at job start Tue Mar 31 2020 21:00:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 O 1.45198 * 109.46691 * 2 1 4 4 C 1.34641 * 116.99779 * 179.97438 * 3 2 1 5 5 O 1.21517 * 119.99667 * 0.02562 * 4 3 2 6 6 N 1.34771 * 120.00216 * 179.97438 * 4 3 2 7 7 C 1.46929 * 120.62912 * 0.02967 * 6 4 3 8 8 C 1.53192 * 108.77454 * 126.36844 * 7 6 4 9 9 C 1.53041 * 109.31741 * 54.63445 * 8 7 6 10 10 C 1.53047 * 109.53607 * 298.63523 * 9 8 7 11 11 H 1.09001 * 109.52071 * 301.39924 * 10 9 8 12 12 C 1.50696 * 109.49839 * 181.31434 * 10 9 8 13 13 O 1.21279 * 119.99707 * 0.16286 * 12 10 9 14 14 N 1.34779 * 119.99770 * 180.16031 * 12 10 9 15 15 C 1.46498 * 119.99667 * 180.02562 * 14 12 10 16 16 H 1.09006 * 110.01815 * 326.39261 * 15 14 12 17 17 C 1.53876 * 110.07467 * 87.80913 * 15 14 12 18 18 C 1.54266 * 106.59821 * 119.30582 * 17 15 14 19 19 C 1.54888 * 104.19633 * 23.61170 * 18 17 15 20 20 H 1.09000 * 110.91000 * 80.44417 * 19 18 17 21 21 C 1.50696 * 110.75792 * 203.74502 * 19 18 17 22 22 H 1.08000 * 120.00217 * 78.61833 * 21 19 18 23 23 C 1.37887 * 119.99897 * 258.61964 * 21 19 18 24 24 N 1.31510 * 120.00009 * 184.70302 * 23 21 19 25 25 Si 1.86807 * 119.99834 * 4.70874 * 23 21 19 26 26 H 1.48504 * 109.46670 * 275.13179 * 25 23 21 27 27 H 1.48501 * 109.47233 * 35.12992 * 25 23 21 28 28 H 1.48490 * 109.47061 * 155.13605 * 25 23 21 29 29 C 1.54259 * 110.03226 * 205.00162 * 15 14 12 30 30 C 1.46927 * 120.63172 * 179.97438 * 6 4 3 31 31 H 1.08999 * 109.46969 * 60.00037 * 1 2 3 32 32 H 1.08998 * 109.46897 * 179.97438 * 1 2 3 33 33 H 1.09001 * 109.47241 * 300.00112 * 1 2 3 34 34 H 1.08994 * 109.47015 * 239.99565 * 2 1 3 35 35 H 1.08998 * 109.46458 * 119.99166 * 2 1 3 36 36 H 1.09003 * 109.58713 * 246.15126 * 7 6 4 37 37 H 1.08990 * 109.58708 * 6.57922 * 7 6 4 38 38 H 1.09005 * 109.49868 * 174.58485 * 8 7 6 39 39 H 1.09004 * 109.49585 * 294.68174 * 8 7 6 40 40 H 1.08998 * 109.45967 * 178.61713 * 9 8 7 41 41 H 1.08995 * 109.46227 * 58.65126 * 9 8 7 42 42 H 0.96993 * 120.00236 * 0.02562 * 14 12 10 43 43 H 1.08996 * 110.03446 * 238.59279 * 17 15 14 44 44 H 1.09007 * 110.02790 * 359.97438 * 17 15 14 45 45 H 1.08997 * 110.48538 * 264.93689 * 18 17 15 46 46 H 1.08997 * 110.48878 * 142.29030 * 18 17 15 47 47 H 0.96998 * 119.99557 * 179.97438 * 24 23 21 48 48 H 1.08999 * 110.48640 * 98.38128 * 29 15 14 49 49 H 1.08994 * 110.48977 * 335.73589 * 29 15 14 50 50 H 1.09005 * 109.58391 * 113.84812 * 30 6 4 51 51 H 1.08999 * 109.58468 * 353.42871 * 30 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0139 1.3690 0.0000 4 6 3.3487 1.5454 0.0005 5 8 4.0889 0.5817 0.0005 6 7 3.8639 2.7908 0.0000 7 6 2.9817 3.9658 -0.0004 8 6 3.3734 4.8769 1.1671 9 6 4.8640 5.2101 1.0712 10 6 5.6838 3.9214 1.1681 11 1 5.4637 3.4197 2.1105 12 6 7.1524 4.2535 1.1060 13 8 7.5090 5.4077 0.9981 14 7 8.0695 3.2679 1.1705 15 6 9.4972 3.5909 1.1106 16 1 9.6579 4.4533 0.4636 17 6 10.0318 3.8850 2.5232 18 6 11.1323 2.8411 2.8041 19 6 11.6088 2.4035 1.3968 20 1 12.3073 3.1288 0.9796 21 6 12.2319 1.0323 1.4464 22 1 11.6037 0.1547 1.4860 23 6 13.6042 0.8981 1.4414 24 7 14.1477 -0.2984 1.3912 25 14 14.6914 2.4158 1.5060 26 1 14.8782 2.9496 0.1328 27 1 14.0479 3.4498 2.3557 28 1 16.0121 2.0546 2.0805 29 6 10.2915 2.3786 0.5824 30 6 5.3183 2.9994 0.0012 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 -0.3634 0.5138 0.8900 34 1 1.8933 -0.5139 -0.8899 35 1 1.8932 -0.5137 0.8901 36 1 3.0943 4.5070 -0.9399 37 1 1.9466 3.6456 0.1174 38 1 2.7913 5.7974 1.1215 39 1 3.1746 4.3665 2.1095 40 1 5.1400 5.8782 1.8870 41 1 5.0664 5.6983 0.1180 42 1 7.7842 2.3449 1.2564 43 1 10.4518 4.8901 2.5618 44 1 9.2288 3.7880 3.2540 45 1 10.7217 1.9913 3.3492 46 1 11.9531 3.2926 3.3615 47 1 15.1131 -0.3927 1.3873 48 1 10.4987 2.4926 -0.4816 49 1 9.7452 1.4540 0.7687 50 1 5.6218 3.4615 -0.9382 51 1 5.8246 2.0415 0.1199 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000497007849.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:00:24 Heat of formation + Delta-G solvation = -160.182024 kcal Electronic energy + Delta-G solvation = -30007.423662 eV Core-core repulsion = 25904.826868 eV Total energy + Delta-G solvation = -4102.596794 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.204 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -41.92845 -41.09977 -39.34466 -38.47136 -37.42118 -35.28868 -34.28956 -34.00634 -32.52037 -32.22433 -30.20672 -29.03272 -26.76057 -25.96363 -25.03838 -23.96143 -22.79989 -21.82761 -21.28212 -20.83435 -20.56463 -19.28748 -19.15561 -18.14002 -17.92042 -17.66648 -17.10088 -16.76562 -16.34565 -16.03241 -15.78420 -15.52264 -15.16311 -14.90495 -14.79973 -14.68695 -14.36033 -14.21529 -14.12085 -14.09286 -13.70952 -13.45928 -13.17400 -12.90800 -12.90024 -12.67536 -12.53371 -12.43865 -12.15453 -12.05036 -12.00561 -11.92735 -11.74018 -11.71762 -11.66306 -11.54827 -11.52653 -11.26208 -11.06395 -10.81318 -10.64701 -10.03970 -9.89162 -8.27419 -6.28999 0.96535 1.35872 1.38287 1.49154 1.56465 1.68536 2.19979 2.36643 2.79621 3.06779 3.56119 3.60802 3.73724 3.85576 3.99544 4.00423 4.04356 4.09984 4.10705 4.15536 4.22991 4.34758 4.41896 4.50897 4.61063 4.66403 4.66703 4.72064 4.75584 4.76878 4.90039 4.92252 4.95431 5.00569 5.03679 5.04705 5.14853 5.16942 5.18669 5.23750 5.32948 5.38304 5.39952 5.51317 5.57907 5.68153 5.74140 6.17770 6.35661 6.55323 6.76916 7.12234 7.21714 7.35599 8.89402 Molecular weight = 338.20amu Principal moments of inertia in cm(-1) A = 0.015799 B = 0.002384 C = 0.002124 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1771.829651 B =11739.859274 C =13179.171395 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.073 3.927 3 O -0.365 6.365 4 C 0.646 3.354 5 O -0.607 6.607 6 N -0.588 5.588 7 C 0.106 3.894 8 C -0.125 4.125 9 C -0.098 4.098 10 C -0.112 4.112 11 H 0.110 0.890 12 C 0.521 3.479 13 O -0.571 6.571 14 N -0.712 5.712 15 C 0.146 3.854 16 H 0.081 0.919 17 C -0.123 4.123 18 C -0.117 4.117 19 C 0.007 3.993 20 H 0.037 0.963 21 C -0.506 4.506 22 H 0.034 0.966 23 C 0.007 3.993 24 N -0.951 5.951 25 Si 0.942 3.058 26 H -0.267 1.267 27 H -0.246 1.246 28 H -0.291 1.291 29 C -0.108 4.108 30 C 0.139 3.861 31 H 0.071 0.929 32 H 0.100 0.900 33 H 0.071 0.929 34 H 0.065 0.935 35 H 0.065 0.935 36 H 0.087 0.913 37 H 0.104 0.896 38 H 0.107 0.893 39 H 0.069 0.931 40 H 0.070 0.930 41 H 0.070 0.930 42 H 0.409 0.591 43 H 0.065 0.935 44 H 0.067 0.933 45 H 0.052 0.948 46 H 0.047 0.953 47 H 0.264 0.736 48 H 0.063 0.937 49 H 0.064 0.936 50 H 0.085 0.915 51 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -31.013 10.102 -2.001 32.678 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.002 4.002 3 O -0.279 6.279 4 C 0.401 3.599 5 O -0.499 6.499 6 N -0.328 5.328 7 C -0.015 4.015 8 C -0.163 4.163 9 C -0.136 4.136 10 C -0.134 4.134 11 H 0.128 0.872 12 C 0.307 3.693 13 O -0.450 6.450 14 N -0.363 5.363 15 C 0.041 3.959 16 H 0.099 0.901 17 C -0.161 4.161 18 C -0.155 4.155 19 C -0.012 4.012 20 H 0.055 0.945 21 C -0.544 4.544 22 H 0.052 0.948 23 C -0.189 4.189 24 N -0.592 5.592 25 Si 0.766 3.234 26 H -0.192 1.192 27 H -0.170 1.170 28 H -0.218 1.218 29 C -0.147 4.147 30 C 0.017 3.983 31 H 0.090 0.910 32 H 0.118 0.882 33 H 0.090 0.910 34 H 0.083 0.917 35 H 0.083 0.917 36 H 0.105 0.895 37 H 0.122 0.878 38 H 0.125 0.875 39 H 0.088 0.912 40 H 0.089 0.911 41 H 0.089 0.911 42 H 0.245 0.755 43 H 0.084 0.916 44 H 0.086 0.914 45 H 0.071 0.929 46 H 0.066 0.934 47 H 0.073 0.927 48 H 0.082 0.918 49 H 0.082 0.918 50 H 0.103 0.897 51 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -30.459 10.475 -2.092 32.278 hybrid contribution 1.242 -0.694 0.156 1.432 sum -29.216 9.781 -1.937 30.871 Atomic orbital electron populations 1.21830 0.89914 1.04459 1.03868 1.23231 0.96723 0.77760 1.02454 1.86231 1.20668 1.34375 1.86640 1.18193 0.81670 0.84024 0.76025 1.91007 1.60704 1.40670 1.57515 1.46938 1.07171 1.03476 1.75249 1.22046 0.94288 0.84983 1.00156 1.21928 0.95151 1.00833 0.98409 1.21350 0.94265 0.94337 1.03637 1.21692 0.90539 0.99747 1.01407 0.87190 1.20775 0.88476 0.84927 0.75111 1.90680 1.82461 1.21077 1.50822 1.46306 1.06052 1.10552 1.73398 1.21565 0.79397 0.98085 0.96804 0.90067 1.22487 0.98285 0.99010 0.96357 1.22528 0.96962 0.97209 0.98823 1.20021 0.93822 0.94336 0.93003 0.94463 1.21247 0.91609 0.92375 1.49151 0.94765 1.25976 0.99841 0.98712 0.94406 1.70060 1.11638 1.24685 1.52789 0.85819 0.77690 0.80388 0.79493 1.19242 1.16955 1.21750 1.22541 0.96309 0.96331 0.99479 1.21480 0.78483 1.00271 0.98085 0.91044 0.88178 0.91028 0.91686 0.91667 0.89510 0.87760 0.87495 0.91250 0.91136 0.91116 0.75519 0.91611 0.91396 0.92872 0.93404 0.92678 0.91841 0.91761 0.89695 0.89167 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.06 10.29 71.98 0.74 -0.32 16 2 C 0.07 1.05 6.19 71.98 0.45 1.50 16 3 O -0.37 -6.58 8.86 -55.51 -0.49 -7.07 16 4 C 0.65 14.55 8.43 129.79 1.09 15.64 16 5 O -0.61 -18.20 15.55 19.79 0.31 -17.89 16 6 N -0.59 -10.36 2.97 -949.32 -2.82 -13.18 16 7 C 0.11 1.15 6.45 86.36 0.56 1.71 16 8 C -0.13 -1.20 6.08 30.67 0.19 -1.02 16 9 C -0.10 -1.48 4.46 30.62 0.14 -1.35 16 10 C -0.11 -2.04 2.68 -11.48 -0.03 -2.07 16 11 H 0.11 1.87 8.14 -2.39 -0.02 1.85 16 12 C 0.52 13.20 7.15 87.66 0.63 13.83 16 13 O -0.57 -18.33 15.63 -3.03 -0.05 -18.38 16 14 N -0.71 -18.73 4.89 -439.11 -2.15 -20.87 16 15 C 0.15 4.66 3.24 45.71 0.15 4.81 16 16 H 0.08 2.69 7.56 -2.38 -0.02 2.67 16 17 C -0.12 -4.02 6.59 31.32 0.21 -3.82 16 18 C -0.12 -4.63 6.26 31.67 0.20 -4.43 16 19 C 0.01 0.34 2.42 -10.25 -0.02 0.31 16 20 H 0.04 1.67 5.68 -2.39 -0.01 1.65 16 21 C -0.51 -28.25 8.93 25.60 0.23 -28.02 16 22 H 0.03 2.12 8.05 -2.91 -0.02 2.09 16 23 C 0.01 0.42 5.47 84.66 0.46 0.89 16 24 N -0.95 -59.50 13.96 21.45 0.30 -59.20 16 25 Si 0.94 44.25 26.85 68.60 1.84 46.09 16 26 H -0.27 -12.08 7.11 99.48 0.71 -11.38 16 27 H -0.25 -10.71 6.83 99.48 0.68 -10.03 16 28 H -0.29 -13.63 7.11 99.48 0.71 -12.92 16 29 C -0.11 -4.03 5.96 31.67 0.19 -3.85 16 30 C 0.14 2.60 5.57 86.35 0.48 3.08 16 31 H 0.07 0.48 8.14 -2.39 -0.02 0.46 16 32 H 0.10 0.41 8.14 -2.39 -0.02 0.39 16 33 H 0.07 0.49 8.14 -2.39 -0.02 0.47 16 34 H 0.06 1.01 8.14 -2.39 -0.02 0.99 16 35 H 0.06 1.02 8.14 -2.39 -0.02 1.00 16 36 H 0.09 0.75 8.14 -2.39 -0.02 0.74 16 37 H 0.10 0.96 6.93 -2.39 -0.02 0.94 16 38 H 0.11 0.59 8.14 -2.38 -0.02 0.57 16 39 H 0.07 0.71 8.14 -2.39 -0.02 0.69 16 40 H 0.07 1.20 8.07 -2.39 -0.02 1.18 16 41 H 0.07 1.15 8.13 -2.39 -0.02 1.13 16 42 H 0.41 9.59 7.90 -92.71 -0.73 8.86 16 43 H 0.07 2.09 8.14 -2.39 -0.02 2.07 16 44 H 0.07 2.07 7.92 -2.38 -0.02 2.05 16 45 H 0.05 2.17 8.04 -2.39 -0.02 2.15 16 46 H 0.05 1.90 7.87 -2.39 -0.02 1.88 16 47 H 0.26 15.54 8.31 -92.71 -0.77 14.76 16 48 H 0.06 2.30 8.14 -2.39 -0.02 2.28 16 49 H 0.06 2.41 7.63 -2.39 -0.02 2.39 16 50 H 0.08 1.52 8.14 -2.38 -0.02 1.50 16 51 H 0.09 1.96 6.60 -2.39 -0.02 1.95 16 Total: -1.00 -73.96 402.31 2.74 -71.22 By element: Atomic # 1 Polarization: 22.22 SS G_CDS: 0.16 Total: 22.38 kcal Atomic # 6 Polarization: -8.75 SS G_CDS: 5.65 Total: -3.10 kcal Atomic # 7 Polarization: -88.59 SS G_CDS: -4.67 Total: -93.26 kcal Atomic # 8 Polarization: -43.11 SS G_CDS: -0.23 Total: -43.34 kcal Atomic # 14 Polarization: 44.25 SS G_CDS: 1.84 Total: 46.09 kcal Total: -73.96 2.74 -71.22 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000497007849.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -88.963 kcal (2) G-P(sol) polarization free energy of solvation -73.962 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -162.925 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.743 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.219 kcal (6) G-S(sol) free energy of system = (1) + (5) -160.182 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds