Wall clock time and date at job start Tue Mar 31 2020 21:02:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53001 * 109.46840 * 2 1 4 4 C 1.52999 * 109.47484 * 239.99579 * 2 1 3 5 5 O 1.45201 * 109.46941 * 119.99452 * 2 1 3 6 6 C 1.34638 * 117.00281 * 60.00096 * 5 2 1 7 7 O 1.21518 * 119.99610 * 0.02562 * 6 5 2 8 8 N 1.34774 * 120.00619 * 179.97438 * 6 5 2 9 9 C 1.46504 * 120.00243 * 180.02562 * 8 6 5 10 10 H 1.08994 * 112.84694 * 336.19720 * 9 8 6 11 11 C 1.53952 * 113.66363 * 107.44038 * 9 8 6 12 12 C 1.53789 * 87.01622 * 139.93170 * 11 9 8 13 13 H 1.09006 * 113.61134 * 89.22904 * 12 11 9 14 14 C 1.50692 * 113.61337 * 220.04494 * 12 11 9 15 15 O 1.21282 * 120.00316 * 74.47499 * 14 12 11 16 16 N 1.34780 * 120.00211 * 254.47408 * 14 12 11 17 17 C 1.46498 * 120.00146 * 185.95056 * 16 14 12 18 18 C 1.53000 * 109.46964 * 175.65446 * 17 16 14 19 19 C 1.50701 * 115.55025 * 305.01716 * 18 17 16 20 20 H 1.07997 * 119.99826 * 114.91275 * 19 18 17 21 21 C 1.37882 * 120.00155 * 295.18074 * 19 18 17 22 22 N 1.31511 * 120.00023 * 171.38488 * 21 19 18 23 23 Si 1.86802 * 119.99797 * 351.39010 * 21 19 18 24 24 H 1.48497 * 109.47117 * 86.74994 * 23 21 19 25 25 H 1.48497 * 109.46931 * 206.74940 * 23 21 19 26 26 H 1.48496 * 109.47171 * 326.74701 * 23 21 19 27 27 C 1.52997 * 117.50115 * 90.69019 * 18 17 16 28 28 C 1.53007 * 117.49863 * 159.35200 * 18 17 16 29 29 C 1.53777 * 87.17212 * 334.63903 * 12 11 9 30 30 H 1.08995 * 109.47043 * 300.00386 * 1 2 3 31 31 H 1.09001 * 109.46954 * 60.00608 * 1 2 3 32 32 H 1.09002 * 109.46626 * 180.02562 * 1 2 3 33 33 H 1.09006 * 109.46594 * 179.97438 * 3 2 1 34 34 H 1.08992 * 109.47005 * 299.99240 * 3 2 1 35 35 H 1.08995 * 109.47617 * 59.99965 * 3 2 1 36 36 H 1.09005 * 109.46774 * 299.99771 * 4 2 1 37 37 H 1.09001 * 109.47177 * 59.99950 * 4 2 1 38 38 H 1.09000 * 109.46980 * 179.97438 * 4 2 1 39 39 H 0.96999 * 119.99511 * 359.97438 * 8 6 5 40 40 H 1.08995 * 113.61656 * 25.41518 * 11 9 8 41 41 H 1.09000 * 113.66585 * 254.45541 * 11 9 8 42 42 H 0.96999 * 120.00051 * 5.94230 * 16 14 12 43 43 H 1.08997 * 109.47310 * 55.65773 * 17 16 14 44 44 H 1.09000 * 109.47198 * 295.65343 * 17 16 14 45 45 H 0.96997 * 120.00089 * 180.02562 * 22 21 19 46 46 H 1.09003 * 117.50183 * 215.00307 * 27 18 17 47 47 H 1.09002 * 117.49655 * 0.02562 * 27 18 17 48 48 H 1.08995 * 117.49624 * 359.97155 * 28 18 17 49 49 H 1.08997 * 117.50161 * 144.97680 * 28 18 17 50 50 H 1.08996 * 113.61772 * 139.94050 * 29 12 11 51 51 H 1.09005 * 113.60983 * 270.84243 * 29 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7213 -1.2492 5 8 2.0140 -0.6844 1.1856 6 6 1.6522 -1.9722 1.3386 7 8 0.9516 -2.5097 0.5038 8 7 2.0680 -2.6656 2.4169 9 6 1.6748 -4.0670 2.5830 10 1 0.7604 -4.3167 2.0448 11 6 2.8234 -5.0637 2.3429 12 6 2.2752 -5.8599 3.5390 13 1 1.5255 -6.6015 3.2631 14 6 3.3497 -6.4194 4.4352 15 8 3.9580 -5.6847 5.1842 16 7 3.6348 -7.7363 4.4044 17 6 4.5851 -8.3027 5.3647 18 6 4.6466 -9.8211 5.1863 19 6 3.3254 -10.5403 5.2778 20 1 2.9257 -11.0476 4.4123 21 6 2.6243 -10.5459 6.4651 22 7 1.3997 -11.0238 6.5033 23 14 3.4139 -9.8745 8.0192 24 1 3.1841 -8.4095 8.0980 25 1 2.8116 -10.5345 9.2053 26 1 4.8736 -10.1457 7.9898 27 6 5.6871 -10.3764 4.2118 28 6 5.8838 -10.5456 5.7204 29 6 1.6760 -4.5378 4.0469 30 1 -0.3633 0.5139 0.8899 31 1 -0.3633 0.5137 -0.8901 32 1 -0.3632 -1.0277 0.0005 33 1 3.1300 1.4425 0.0005 34 1 1.6767 1.9562 -0.8900 35 1 1.6767 1.9564 0.8899 36 1 1.6768 -1.7490 -1.2490 37 1 1.6768 -0.2076 -2.1392 38 1 3.1301 -0.7209 -1.2493 39 1 2.6282 -2.2368 3.0827 40 1 3.8125 -4.6401 2.5169 41 1 2.7502 -5.5953 1.3942 42 1 3.2107 -8.3091 3.7464 43 1 4.2601 -8.0689 6.3785 44 1 5.5734 -7.8764 5.1925 45 1 0.9064 -11.0275 7.3385 46 1 5.4162 -11.2619 3.6368 47 1 6.3283 -9.6600 3.6981 48 1 6.6541 -9.9406 6.1984 49 1 5.7422 -11.5423 6.1382 50 1 0.6780 -4.6454 4.4718 51 1 2.3509 -3.9702 4.6876 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000497129812.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:02:34 Heat of formation + Delta-G solvation = -81.945075 kcal Electronic energy + Delta-G solvation = -29582.794732 eV Core-core repulsion = 25483.590546 eV Total energy + Delta-G solvation = -4099.204185 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.204 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.05557 -40.06948 -38.25275 -37.15252 -36.53956 -34.52400 -33.40247 -33.18993 -32.22647 -27.72353 -27.66384 -27.61777 -25.90836 -25.82951 -24.75151 -22.65916 -21.65867 -20.60847 -20.27781 -19.56039 -19.00628 -18.21311 -17.43760 -16.66197 -16.42121 -16.31057 -15.62652 -15.27705 -15.20501 -14.69372 -14.64565 -14.59103 -14.31458 -13.84506 -13.58654 -13.08816 -12.96301 -12.82478 -12.79381 -12.55039 -12.48379 -12.26733 -12.20394 -12.19654 -12.09354 -11.71254 -11.62030 -11.33544 -11.17134 -11.10449 -10.74485 -10.68580 -10.61468 -10.58657 -10.31487 -10.22002 -9.69248 -9.40639 -9.25947 -9.13962 -8.81727 -8.52065 -8.26981 -6.22056 -4.24204 1.98098 2.64788 3.00970 3.26280 3.35798 3.41057 3.72689 4.00608 4.34603 4.35711 4.40966 4.44030 4.49677 4.59738 4.76081 4.77463 4.89497 5.14995 5.15183 5.22670 5.23031 5.37560 5.42793 5.47298 5.52197 5.55751 5.59865 5.66362 5.67014 5.68505 5.80307 5.86858 5.92144 5.93401 5.99943 6.08634 6.10734 6.21327 6.32508 6.39707 6.42196 6.49289 6.67247 6.89445 7.04474 7.16040 7.26495 7.63564 8.20105 8.21244 8.37067 8.77252 8.80077 9.42247 10.88736 Molecular weight = 338.20amu Principal moments of inertia in cm(-1) A = 0.023437 B = 0.002059 C = 0.002018 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1194.388748 B =13593.579553 C =13870.253941 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.136 3.864 3 C -0.141 4.141 4 C -0.184 4.184 5 O -0.367 6.367 6 C 0.650 3.350 7 O -0.569 6.569 8 N -0.697 5.697 9 C 0.140 3.860 10 H 0.123 0.877 11 C -0.131 4.131 12 C -0.134 4.134 13 H 0.117 0.883 14 C 0.519 3.481 15 O -0.561 6.561 16 N -0.694 5.694 17 C 0.151 3.849 18 C -0.020 4.020 19 C -0.490 4.490 20 H 0.078 0.922 21 C 0.085 3.915 22 N -0.890 5.890 23 Si 0.865 3.135 24 H -0.275 1.275 25 H -0.292 1.292 26 H -0.251 1.251 27 C -0.180 4.180 28 C -0.187 4.187 29 C -0.123 4.123 30 H 0.059 0.941 31 H 0.069 0.931 32 H 0.088 0.912 33 H 0.066 0.934 34 H 0.080 0.920 35 H 0.066 0.934 36 H 0.089 0.911 37 H 0.069 0.931 38 H 0.059 0.941 39 H 0.408 0.592 40 H 0.091 0.909 41 H 0.082 0.918 42 H 0.408 0.592 43 H 0.059 0.941 44 H 0.046 0.954 45 H 0.266 0.734 46 H 0.085 0.915 47 H 0.072 0.928 48 H 0.070 0.930 49 H 0.089 0.911 50 H 0.083 0.917 51 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.397 20.665 -12.212 24.007 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.241 4.241 2 C 0.099 3.901 3 C -0.198 4.198 4 C -0.241 4.241 5 O -0.282 6.282 6 C 0.403 3.597 7 O -0.459 6.459 8 N -0.355 5.355 9 C 0.036 3.964 10 H 0.141 0.859 11 C -0.171 4.171 12 C -0.156 4.156 13 H 0.135 0.865 14 C 0.304 3.696 15 O -0.441 6.441 16 N -0.343 5.343 17 C 0.027 3.973 18 C -0.021 4.021 19 C -0.527 4.527 20 H 0.096 0.904 21 C -0.119 4.119 22 N -0.526 5.526 23 Si 0.693 3.307 24 H -0.201 1.201 25 H -0.219 1.219 26 H -0.175 1.175 27 C -0.217 4.217 28 C -0.225 4.225 29 C -0.161 4.161 30 H 0.078 0.922 31 H 0.088 0.912 32 H 0.107 0.893 33 H 0.085 0.915 34 H 0.098 0.902 35 H 0.085 0.915 36 H 0.107 0.893 37 H 0.088 0.912 38 H 0.078 0.922 39 H 0.243 0.757 40 H 0.110 0.890 41 H 0.101 0.899 42 H 0.244 0.756 43 H 0.077 0.923 44 H 0.064 0.936 45 H 0.076 0.924 46 H 0.104 0.896 47 H 0.091 0.909 48 H 0.088 0.912 49 H 0.107 0.893 50 H 0.101 0.899 51 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 0.292 20.918 -12.012 24.124 hybrid contribution 0.344 0.084 0.965 1.028 sum 0.636 21.002 -11.047 23.739 Atomic orbital electron populations 1.22519 0.93980 1.05149 1.02428 1.22060 0.94375 0.91487 0.82155 1.21863 1.02279 0.92590 1.03085 1.22519 1.01577 1.03598 0.96399 1.86308 1.71591 1.23810 1.46446 1.18171 0.78711 0.80369 0.82424 1.90895 1.41308 1.70479 1.43178 1.44837 1.54923 1.12291 1.23471 1.22641 0.98955 0.77117 0.97642 0.85924 1.23434 0.99451 0.96509 0.97672 1.22498 0.98350 0.97615 0.97165 0.86516 1.20177 0.83687 0.82454 0.83275 1.90626 1.52686 1.58826 1.41944 1.45844 1.44988 1.07868 1.35594 1.21052 0.90643 0.93444 0.92126 1.19641 0.91585 0.90140 1.00715 1.20188 1.00460 1.33537 0.98541 0.90378 1.24896 0.94068 0.94060 0.98831 1.69894 1.09696 1.45757 1.27274 0.87070 0.81545 0.79213 0.82920 1.20127 1.21903 1.17467 1.22827 1.03865 1.02782 0.92273 1.23024 1.01478 1.02252 0.95735 1.23290 1.02490 0.94846 0.95516 0.92202 0.91181 0.89289 0.91466 0.90163 0.91485 0.89260 0.91192 0.92177 0.75693 0.89007 0.89947 0.75612 0.92306 0.93581 0.92427 0.89603 0.90905 0.91164 0.89280 0.89883 0.87891 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.58 8.37 37.16 0.31 -1.27 16 2 C 0.14 1.20 1.13 -90.62 -0.10 1.10 16 3 C -0.14 -0.89 8.85 37.16 0.33 -0.56 16 4 C -0.18 -1.60 8.37 37.16 0.31 -1.29 16 5 O -0.37 -3.98 9.94 -40.32 -0.40 -4.38 16 6 C 0.65 7.74 8.06 54.05 0.44 8.17 16 7 O -0.57 -7.84 11.48 -19.29 -0.22 -8.06 16 8 N -0.70 -7.25 5.36 -57.84 -0.31 -7.56 16 9 C 0.14 1.49 4.24 -67.03 -0.28 1.21 16 10 H 0.12 1.34 7.46 -51.93 -0.39 0.95 16 11 C -0.13 -1.48 7.44 -25.82 -0.19 -1.67 16 12 C -0.13 -1.75 4.14 -90.96 -0.38 -2.13 16 13 H 0.12 1.38 8.14 -51.93 -0.42 0.96 16 14 C 0.52 9.16 7.25 -10.99 -0.08 9.08 16 15 O -0.56 -11.57 16.04 5.56 0.09 -11.48 16 16 N -0.69 -13.02 5.36 -60.30 -0.32 -13.34 16 17 C 0.15 3.16 5.21 -4.04 -0.02 3.14 16 18 C -0.02 -0.42 0.96 -155.66 -0.15 -0.57 16 19 C -0.49 -12.50 8.77 -34.44 -0.30 -12.80 16 20 H 0.08 2.16 8.06 -52.49 -0.42 1.73 16 21 C 0.09 2.31 5.46 -17.82 -0.10 2.21 16 22 N -0.89 -25.62 13.96 55.43 0.77 -24.84 16 23 Si 0.87 20.96 25.18 -169.99 -4.28 16.68 16 24 H -0.28 -6.81 6.73 56.52 0.38 -6.43 16 25 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 26 H -0.25 -5.74 5.86 56.52 0.33 -5.41 16 27 C -0.18 -3.39 9.93 -26.69 -0.26 -3.65 16 28 C -0.19 -3.74 8.05 -26.69 -0.21 -3.96 16 29 C -0.12 -1.42 7.28 -25.92 -0.19 -1.61 16 30 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 31 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 32 H 0.09 0.97 5.88 -51.93 -0.31 0.67 16 33 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 34 H 0.08 0.36 8.14 -51.93 -0.42 -0.06 16 35 H 0.07 0.41 8.14 -51.93 -0.42 -0.02 16 36 H 0.09 0.99 5.88 -51.93 -0.31 0.68 16 37 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 38 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 39 H 0.41 3.64 8.84 -40.82 -0.36 3.28 16 40 H 0.09 1.10 8.09 -51.93 -0.42 0.68 16 41 H 0.08 0.86 8.14 -51.93 -0.42 0.43 16 42 H 0.41 7.21 8.13 -40.82 -0.33 6.88 16 43 H 0.06 1.37 5.05 -51.93 -0.26 1.11 16 44 H 0.05 0.91 8.09 -51.93 -0.42 0.49 16 45 H 0.27 7.30 8.31 -40.82 -0.34 6.96 16 46 H 0.09 1.60 8.14 -51.93 -0.42 1.18 16 47 H 0.07 1.23 8.14 -51.93 -0.42 0.80 16 48 H 0.07 1.30 8.14 -51.93 -0.42 0.88 16 49 H 0.09 1.84 8.14 -51.93 -0.42 1.42 16 50 H 0.08 0.89 8.14 -51.93 -0.42 0.46 16 51 H 0.10 1.29 7.35 -51.93 -0.38 0.91 16 LS Contribution 405.67 15.07 6.11 6.11 Total: -1.00 -31.24 405.67 -8.19 -39.43 By element: Atomic # 1 Polarization: 20.79 SS G_CDS: -8.74 Total: 12.04 kcal Atomic # 6 Polarization: -3.71 SS G_CDS: -0.89 Total: -4.60 kcal Atomic # 7 Polarization: -45.89 SS G_CDS: 0.14 Total: -45.75 kcal Atomic # 8 Polarization: -23.39 SS G_CDS: -0.53 Total: -23.92 kcal Atomic # 14 Polarization: 20.96 SS G_CDS: -4.28 Total: 16.68 kcal Total LS contribution 6.11 Total: 6.11 kcal Total: -31.24 -8.19 -39.43 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000497129812.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.514 kcal (2) G-P(sol) polarization free energy of solvation -31.242 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.755 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.190 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.431 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.945 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds