Wall clock time and date at job start Tue Mar 31 2020 21:02:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53001 * 109.46840 * 2 1 4 4 C 1.52999 * 109.47484 * 239.99579 * 2 1 3 5 5 O 1.45201 * 109.46941 * 119.99452 * 2 1 3 6 6 C 1.34638 * 117.00281 * 60.00096 * 5 2 1 7 7 O 1.21518 * 119.99610 * 0.02562 * 6 5 2 8 8 N 1.34774 * 120.00619 * 179.97438 * 6 5 2 9 9 C 1.46504 * 120.00243 * 180.02562 * 8 6 5 10 10 H 1.08994 * 112.84694 * 336.19720 * 9 8 6 11 11 C 1.53952 * 113.66363 * 107.44038 * 9 8 6 12 12 C 1.53789 * 87.01622 * 139.93170 * 11 9 8 13 13 H 1.09006 * 113.61134 * 89.22904 * 12 11 9 14 14 C 1.50692 * 113.61337 * 220.04494 * 12 11 9 15 15 O 1.21282 * 120.00316 * 74.47499 * 14 12 11 16 16 N 1.34780 * 120.00211 * 254.47408 * 14 12 11 17 17 C 1.46498 * 120.00146 * 185.95056 * 16 14 12 18 18 C 1.53000 * 109.46964 * 175.65446 * 17 16 14 19 19 C 1.50701 * 115.55025 * 305.01716 * 18 17 16 20 20 H 1.07997 * 119.99826 * 114.91275 * 19 18 17 21 21 C 1.37882 * 120.00155 * 295.18074 * 19 18 17 22 22 N 1.31511 * 120.00023 * 171.38488 * 21 19 18 23 23 Si 1.86802 * 119.99797 * 351.39010 * 21 19 18 24 24 H 1.48497 * 109.47117 * 86.74994 * 23 21 19 25 25 H 1.48497 * 109.46931 * 206.74940 * 23 21 19 26 26 H 1.48496 * 109.47171 * 326.74701 * 23 21 19 27 27 C 1.52997 * 117.50115 * 90.69019 * 18 17 16 28 28 C 1.53007 * 117.49863 * 159.35200 * 18 17 16 29 29 C 1.53777 * 87.17212 * 334.63903 * 12 11 9 30 30 H 1.08995 * 109.47043 * 300.00386 * 1 2 3 31 31 H 1.09001 * 109.46954 * 60.00608 * 1 2 3 32 32 H 1.09002 * 109.46626 * 180.02562 * 1 2 3 33 33 H 1.09006 * 109.46594 * 179.97438 * 3 2 1 34 34 H 1.08992 * 109.47005 * 299.99240 * 3 2 1 35 35 H 1.08995 * 109.47617 * 59.99965 * 3 2 1 36 36 H 1.09005 * 109.46774 * 299.99771 * 4 2 1 37 37 H 1.09001 * 109.47177 * 59.99950 * 4 2 1 38 38 H 1.09000 * 109.46980 * 179.97438 * 4 2 1 39 39 H 0.96999 * 119.99511 * 359.97438 * 8 6 5 40 40 H 1.08995 * 113.61656 * 25.41518 * 11 9 8 41 41 H 1.09000 * 113.66585 * 254.45541 * 11 9 8 42 42 H 0.96999 * 120.00051 * 5.94230 * 16 14 12 43 43 H 1.08997 * 109.47310 * 55.65773 * 17 16 14 44 44 H 1.09000 * 109.47198 * 295.65343 * 17 16 14 45 45 H 0.96997 * 120.00089 * 180.02562 * 22 21 19 46 46 H 1.09003 * 117.50183 * 215.00307 * 27 18 17 47 47 H 1.09002 * 117.49655 * 0.02562 * 27 18 17 48 48 H 1.08995 * 117.49624 * 359.97155 * 28 18 17 49 49 H 1.08997 * 117.50161 * 144.97680 * 28 18 17 50 50 H 1.08996 * 113.61772 * 139.94050 * 29 12 11 51 51 H 1.09005 * 113.60983 * 270.84243 * 29 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7213 -1.2492 5 8 2.0140 -0.6844 1.1856 6 6 1.6522 -1.9722 1.3386 7 8 0.9516 -2.5097 0.5038 8 7 2.0680 -2.6656 2.4169 9 6 1.6748 -4.0670 2.5830 10 1 0.7604 -4.3167 2.0448 11 6 2.8234 -5.0637 2.3429 12 6 2.2752 -5.8599 3.5390 13 1 1.5255 -6.6015 3.2631 14 6 3.3497 -6.4194 4.4352 15 8 3.9580 -5.6847 5.1842 16 7 3.6348 -7.7363 4.4044 17 6 4.5851 -8.3027 5.3647 18 6 4.6466 -9.8211 5.1863 19 6 3.3254 -10.5403 5.2778 20 1 2.9257 -11.0476 4.4123 21 6 2.6243 -10.5459 6.4651 22 7 1.3997 -11.0238 6.5033 23 14 3.4139 -9.8745 8.0192 24 1 3.1841 -8.4095 8.0980 25 1 2.8116 -10.5345 9.2053 26 1 4.8736 -10.1457 7.9898 27 6 5.6871 -10.3764 4.2118 28 6 5.8838 -10.5456 5.7204 29 6 1.6760 -4.5378 4.0469 30 1 -0.3633 0.5139 0.8899 31 1 -0.3633 0.5137 -0.8901 32 1 -0.3632 -1.0277 0.0005 33 1 3.1300 1.4425 0.0005 34 1 1.6767 1.9562 -0.8900 35 1 1.6767 1.9564 0.8899 36 1 1.6768 -1.7490 -1.2490 37 1 1.6768 -0.2076 -2.1392 38 1 3.1301 -0.7209 -1.2493 39 1 2.6282 -2.2368 3.0827 40 1 3.8125 -4.6401 2.5169 41 1 2.7502 -5.5953 1.3942 42 1 3.2107 -8.3091 3.7464 43 1 4.2601 -8.0689 6.3785 44 1 5.5734 -7.8764 5.1925 45 1 0.9064 -11.0275 7.3385 46 1 5.4162 -11.2619 3.6368 47 1 6.3283 -9.6600 3.6981 48 1 6.6541 -9.9406 6.1984 49 1 5.7422 -11.5423 6.1382 50 1 0.6780 -4.6454 4.4718 51 1 2.3509 -3.9702 4.6876 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000497129812.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:02:33 Heat of formation + Delta-G solvation = -103.123101 kcal Electronic energy + Delta-G solvation = -29583.713080 eV Core-core repulsion = 25483.590546 eV Total energy + Delta-G solvation = -4100.122533 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.204 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -41.95288 -41.22530 -39.49137 -38.53424 -37.62693 -35.33430 -34.92978 -34.27050 -34.04877 -29.08161 -28.33314 -28.27351 -27.64807 -26.76957 -26.14264 -23.62835 -23.20038 -21.63350 -21.30743 -21.07314 -20.29931 -19.12634 -18.72636 -18.20402 -17.45347 -17.18062 -16.99564 -16.85511 -16.30061 -16.04365 -15.82043 -15.51011 -15.33713 -15.15659 -14.87966 -14.55492 -14.31545 -14.21596 -13.92521 -13.55690 -13.48839 -13.33679 -13.04483 -13.01262 -12.88661 -12.84034 -12.64305 -12.51500 -12.41589 -12.28175 -12.16176 -12.12483 -12.10642 -11.66707 -11.49201 -11.36684 -11.08384 -11.04785 -10.80669 -10.65453 -10.32204 -10.15564 -9.84670 -8.31166 -6.33492 1.17587 1.31726 1.37871 1.46606 1.61807 1.76260 2.34196 2.38339 2.99906 3.18018 3.34076 3.37813 3.52267 3.75770 3.77787 3.82975 3.84521 3.97473 4.04195 4.18721 4.31943 4.45299 4.45644 4.56385 4.60003 4.64431 4.65707 4.73249 4.76987 4.79295 4.82250 4.87358 4.90000 4.90394 4.92180 4.95444 5.04420 5.07882 5.17923 5.26650 5.31149 5.34655 5.46365 5.51520 5.59409 5.62013 5.70977 6.30785 6.41174 6.70022 6.78593 7.33886 7.34414 7.35236 8.82811 Molecular weight = 338.20amu Principal moments of inertia in cm(-1) A = 0.023437 B = 0.002059 C = 0.002018 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1194.388748 B =13593.579553 C =13870.253941 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.124 3.876 3 C -0.136 4.136 4 C -0.180 4.180 5 O -0.371 6.371 6 C 0.647 3.353 7 O -0.590 6.590 8 N -0.692 5.692 9 C 0.152 3.848 10 H 0.124 0.876 11 C -0.122 4.122 12 C -0.134 4.134 13 H 0.130 0.870 14 C 0.515 3.485 15 O -0.592 6.592 16 N -0.699 5.699 17 C 0.157 3.843 18 C -0.045 4.045 19 C -0.473 4.473 20 H 0.047 0.953 21 C 0.038 3.962 22 N -0.936 5.936 23 Si 0.913 3.087 24 H -0.285 1.285 25 H -0.299 1.299 26 H -0.228 1.228 27 C -0.155 4.155 28 C -0.185 4.185 29 C -0.119 4.119 30 H 0.061 0.939 31 H 0.090 0.910 32 H 0.063 0.937 33 H 0.068 0.932 34 H 0.102 0.898 35 H 0.068 0.932 36 H 0.063 0.937 37 H 0.090 0.910 38 H 0.060 0.940 39 H 0.415 0.585 40 H 0.086 0.914 41 H 0.094 0.906 42 H 0.412 0.588 43 H 0.033 0.967 44 H 0.060 0.940 45 H 0.264 0.736 46 H 0.085 0.915 47 H 0.100 0.900 48 H 0.091 0.909 49 H 0.080 0.920 50 H 0.093 0.907 51 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.748 22.375 -13.266 26.071 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C 0.088 3.912 3 C -0.193 4.193 4 C -0.237 4.237 5 O -0.286 6.286 6 C 0.401 3.599 7 O -0.481 6.481 8 N -0.350 5.350 9 C 0.048 3.952 10 H 0.142 0.858 11 C -0.161 4.161 12 C -0.156 4.156 13 H 0.148 0.852 14 C 0.303 3.697 15 O -0.474 6.474 16 N -0.347 5.347 17 C 0.033 3.967 18 C -0.046 4.046 19 C -0.511 4.511 20 H 0.065 0.935 21 C -0.161 4.161 22 N -0.575 5.575 23 Si 0.739 3.261 24 H -0.212 1.212 25 H -0.226 1.226 26 H -0.150 1.150 27 C -0.192 4.192 28 C -0.223 4.223 29 C -0.157 4.157 30 H 0.080 0.920 31 H 0.109 0.891 32 H 0.081 0.919 33 H 0.087 0.913 34 H 0.121 0.879 35 H 0.087 0.913 36 H 0.082 0.918 37 H 0.109 0.891 38 H 0.079 0.921 39 H 0.252 0.748 40 H 0.104 0.896 41 H 0.113 0.887 42 H 0.248 0.752 43 H 0.051 0.949 44 H 0.078 0.922 45 H 0.073 0.927 46 H 0.104 0.896 47 H 0.119 0.881 48 H 0.110 0.890 49 H 0.099 0.901 50 H 0.111 0.889 51 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 1.674 22.634 -13.077 26.194 hybrid contribution -0.064 -0.439 1.201 1.280 sum 1.610 22.195 -11.876 25.224 Atomic orbital electron populations 1.22475 0.93908 1.03748 1.03562 1.22419 0.94642 0.92679 0.81495 1.21888 1.02384 0.90752 1.04312 1.22476 1.01565 1.02312 0.97369 1.86322 1.71607 1.23193 1.47478 1.18302 0.78511 0.80735 0.82376 1.90892 1.42242 1.71005 1.43965 1.44780 1.54729 1.12127 1.23351 1.22465 0.98731 0.77231 0.96806 0.85787 1.23388 0.99247 0.96178 0.97295 1.22578 0.97413 0.98369 0.97250 0.85159 1.20913 0.83902 0.81747 0.83151 1.90605 1.54002 1.59386 1.43394 1.45899 1.44965 1.08485 1.35394 1.20867 0.91691 0.92824 0.91335 1.19516 0.90506 0.90333 1.04292 1.20302 1.01809 1.32062 0.96894 0.93458 1.25508 0.94375 0.94840 1.01418 1.70007 1.11238 1.48491 1.27735 0.86316 0.82119 0.77720 0.79916 1.21233 1.22585 1.15001 1.22874 1.01799 1.02755 0.91729 1.23067 1.00444 1.01742 0.97020 1.23265 1.02657 0.93788 0.96003 0.92021 0.89106 0.91854 0.91318 0.87941 0.91255 0.91842 0.89106 0.92096 0.74832 0.89582 0.88716 0.75156 0.94916 0.92178 0.92702 0.89613 0.88131 0.89016 0.90116 0.88882 0.88744 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.88 8.37 71.98 0.60 -2.28 16 2 C 0.12 2.02 1.13 -10.79 -0.01 2.01 16 3 C -0.14 -1.40 8.85 71.98 0.64 -0.76 16 4 C -0.18 -2.93 8.37 71.98 0.60 -2.33 16 5 O -0.37 -7.72 9.94 -55.48 -0.55 -8.27 16 6 C 0.65 14.99 8.06 129.79 1.05 16.04 16 7 O -0.59 -16.12 11.48 19.78 0.23 -15.89 16 8 N -0.69 -13.73 5.36 -567.33 -3.04 -16.77 16 9 C 0.15 3.05 4.24 45.57 0.19 3.24 16 10 H 0.12 2.55 7.46 -2.39 -0.02 2.53 16 11 C -0.12 -2.57 7.44 31.18 0.23 -2.34 16 12 C -0.13 -3.35 4.14 -11.01 -0.05 -3.40 16 13 H 0.13 2.91 8.14 -2.38 -0.02 2.89 16 14 C 0.52 17.83 7.25 87.65 0.64 18.46 16 15 O -0.59 -24.14 16.04 -3.04 -0.05 -24.19 16 16 N -0.70 -25.63 5.36 -463.07 -2.48 -28.11 16 17 C 0.16 6.36 5.21 86.38 0.45 6.81 16 18 C -0.05 -1.89 0.96 -52.93 -0.05 -1.94 16 19 C -0.47 -24.19 8.77 25.60 0.22 -23.97 16 20 H 0.05 2.66 8.06 -2.91 -0.02 2.64 16 21 C 0.04 2.06 5.46 84.66 0.46 2.53 16 22 N -0.94 -55.19 13.96 21.45 0.30 -54.89 16 23 Si 0.91 43.44 25.18 68.60 1.73 45.17 16 24 H -0.29 -13.99 6.73 99.48 0.67 -13.32 16 25 H -0.30 -14.39 7.11 99.48 0.71 -13.68 16 26 H -0.23 -9.82 5.86 99.48 0.58 -9.24 16 27 C -0.15 -5.36 9.93 30.62 0.30 -5.05 16 28 C -0.18 -6.90 8.05 30.62 0.25 -6.65 16 29 C -0.12 -2.62 7.28 31.12 0.23 -2.39 16 30 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 31 H 0.09 1.03 8.14 -2.39 -0.02 1.01 16 32 H 0.06 1.37 5.88 -2.39 -0.01 1.36 16 33 H 0.07 0.70 8.14 -2.38 -0.02 0.68 16 34 H 0.10 0.60 8.14 -2.39 -0.02 0.58 16 35 H 0.07 0.69 8.14 -2.39 -0.02 0.67 16 36 H 0.06 1.39 5.88 -2.38 -0.01 1.38 16 37 H 0.09 1.05 8.14 -2.39 -0.02 1.03 16 38 H 0.06 0.95 8.14 -2.39 -0.02 0.93 16 39 H 0.42 7.02 8.84 -92.71 -0.82 6.20 16 40 H 0.09 1.95 8.09 -2.39 -0.02 1.93 16 41 H 0.09 1.79 8.14 -2.39 -0.02 1.77 16 42 H 0.41 14.31 8.13 -92.71 -0.75 13.55 16 43 H 0.03 1.50 5.05 -2.39 -0.01 1.48 16 44 H 0.06 2.25 8.09 -2.39 -0.02 2.23 16 45 H 0.26 14.91 8.31 -92.71 -0.77 14.14 16 46 H 0.09 2.99 8.14 -2.39 -0.02 2.97 16 47 H 0.10 2.97 8.14 -2.39 -0.02 2.95 16 48 H 0.09 3.06 8.14 -2.39 -0.02 3.04 16 49 H 0.08 3.15 8.14 -2.39 -0.02 3.13 16 50 H 0.09 1.88 8.14 -2.39 -0.02 1.86 16 51 H 0.09 2.30 7.35 -2.38 -0.02 2.28 16 Total: -1.00 -68.15 405.67 1.09 -67.05 By element: Atomic # 1 Polarization: 38.72 SS G_CDS: -0.79 Total: 37.93 kcal Atomic # 6 Polarization: -7.78 SS G_CDS: 5.75 Total: -2.03 kcal Atomic # 7 Polarization: -94.55 SS G_CDS: -5.22 Total: -99.77 kcal Atomic # 8 Polarization: -47.97 SS G_CDS: -0.37 Total: -48.34 kcal Atomic # 14 Polarization: 43.44 SS G_CDS: 1.73 Total: 45.17 kcal Total: -68.15 1.09 -67.05 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000497129812.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.070 kcal (2) G-P(sol) polarization free energy of solvation -68.146 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.216 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.093 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.053 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.123 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds