Wall clock time and date at job start Tue Mar 31 2020 21:17:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.35897 * 117.00161 * 2 1 4 4 C 1.38800 * 120.02746 * 0.27327 * 3 2 1 5 5 C 1.38146 * 120.05431 * 180.27825 * 4 3 2 6 6 C 1.38195 * 120.11272 * 359.44493 * 5 4 3 7 7 C 1.50703 * 119.97867 * 180.25453 * 6 5 4 8 8 N 1.46901 * 109.47067 * 260.00659 * 7 6 5 9 9 C 1.46903 * 110.99679 * 180.02562 * 8 7 6 10 10 C 1.52998 * 109.46999 * 179.97438 * 9 8 7 11 11 H 1.09007 * 109.46906 * 59.99302 * 10 9 8 12 12 O 1.42898 * 109.47376 * 299.99796 * 10 9 8 13 13 C 1.53001 * 109.47077 * 179.97438 * 10 9 8 14 14 N 1.46903 * 109.46772 * 180.46230 * 13 10 9 15 15 C 1.46903 * 110.99948 * 199.85431 * 14 13 10 16 16 C 1.46901 * 110.99960 * 75.90184 * 14 13 10 17 17 C 1.50704 * 109.47074 * 189.99615 * 16 14 13 18 18 H 1.07997 * 119.99733 * 0.02562 * 17 16 14 19 19 C 1.37876 * 119.99696 * 180.02562 * 17 16 14 20 20 N 1.31520 * 119.99644 * 180.02562 * 19 17 16 21 21 Si 1.86799 * 120.00411 * 359.97438 * 19 17 16 22 22 H 1.48495 * 109.47211 * 89.99834 * 21 19 17 23 23 H 1.48500 * 109.47178 * 210.00421 * 21 19 17 24 24 H 1.48503 * 109.47097 * 330.00263 * 21 19 17 25 25 C 1.38752 * 120.05290 * 0.28108 * 6 5 4 26 26 O 1.35903 * 120.02940 * 180.02562 * 25 6 5 27 27 C 1.42898 * 116.99962 * 179.97438 * 26 25 6 28 28 C 1.38614 * 120.03096 * 179.97438 * 3 2 1 29 29 H 1.08997 * 109.47493 * 300.00140 * 1 2 3 30 30 H 1.09002 * 109.47158 * 60.00598 * 1 2 3 31 31 H 1.08998 * 109.47043 * 179.97438 * 1 2 3 32 32 H 1.08005 * 119.96925 * 359.97438 * 4 3 2 33 33 H 1.08001 * 119.94766 * 179.72179 * 5 4 3 34 34 H 1.09005 * 109.46624 * 20.00026 * 7 6 5 35 35 H 1.08991 * 109.47161 * 140.00009 * 7 6 5 36 36 H 1.00903 * 110.99247 * 303.94618 * 8 7 6 37 37 H 1.09006 * 109.46598 * 299.99143 * 9 8 7 38 38 H 1.08994 * 109.47622 * 59.99578 * 9 8 7 39 39 H 0.96698 * 113.99587 * 299.99909 * 12 10 9 40 40 H 1.08999 * 109.47515 * 300.46403 * 13 10 9 41 41 H 1.09001 * 109.46792 * 60.46904 * 13 10 9 42 42 H 1.08994 * 109.47097 * 64.82066 * 15 14 13 43 43 H 1.08991 * 109.47174 * 184.82756 * 15 14 13 44 44 H 1.09005 * 109.46900 * 304.82508 * 15 14 13 45 45 H 1.09003 * 109.47173 * 309.99426 * 16 14 13 46 46 H 1.09001 * 109.47225 * 69.99894 * 16 14 13 47 47 H 0.97003 * 119.99714 * 179.97438 * 20 19 17 48 48 H 1.09001 * 109.47374 * 299.99473 * 27 26 25 49 49 H 1.09001 * 109.47471 * 59.99787 * 27 26 25 50 50 H 1.09000 * 109.47342 * 179.97438 * 27 26 25 51 51 H 1.08001 * 120.05449 * 0.02562 * 28 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0459 1.2108 0.0000 4 6 1.2906 2.3753 0.0057 5 6 1.9172 3.6065 -0.0001 6 6 3.2970 3.6821 0.0000 7 6 3.9774 5.0268 -0.0006 8 7 4.4131 5.3546 -1.3647 9 6 5.0827 6.6616 -1.4036 10 6 5.5215 6.9673 -2.8371 11 1 4.6475 6.9871 -3.4882 12 8 6.4258 5.9553 -3.2845 13 6 6.2184 8.3288 -2.8778 14 7 6.6299 8.6271 -4.2561 15 6 7.6825 9.6515 -4.2811 16 6 5.4788 9.0351 -5.0725 17 6 5.8869 9.0945 -6.5220 18 1 6.8999 8.8529 -6.8081 19 6 4.9670 9.4573 -7.4828 20 7 5.3230 9.5086 -8.7479 21 14 3.2147 9.8744 -6.9881 22 1 3.1146 11.3275 -6.6988 23 1 2.2908 9.5256 -8.0971 24 1 2.8456 9.1016 -5.7748 25 6 4.0566 2.5210 0.0000 26 8 5.4136 2.5960 0.0006 27 6 6.1316 1.3605 0.0011 28 6 3.4301 1.2841 0.0005 29 1 -0.3634 0.5138 0.8899 30 1 -0.3633 0.5137 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 0.2120 2.3187 0.0098 33 1 1.3277 4.5114 -0.0001 34 1 3.2797 5.7872 0.3506 35 1 4.8438 4.9959 0.6600 36 1 5.0102 4.6315 -1.7370 37 1 4.3929 7.4335 -1.0620 38 1 5.9568 6.6416 -0.7529 39 1 7.2283 5.8809 -2.7501 40 1 5.5310 9.0994 -2.5289 41 1 7.0970 8.3066 -2.2330 42 1 8.5802 9.2618 -3.8012 43 1 7.9082 9.9154 -5.3143 44 1 7.3401 10.5375 -3.7463 45 1 4.6727 8.3114 -4.9514 46 1 5.1356 10.0185 -4.7511 47 1 4.6757 9.7635 -9.4239 48 1 5.8696 0.7884 0.8911 49 1 5.8703 0.7880 -0.8889 50 1 7.2027 1.5627 0.0011 51 1 4.0197 0.3792 0.0005 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000516453022.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:17:14 Heat of formation + Delta-G solvation = -86.053173 kcal Electronic energy + Delta-G solvation = -29329.411771 eV Core-core repulsion = 25230.029446 eV Total energy + Delta-G solvation = -4099.382326 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.204 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -40.84681 -39.29137 -38.26619 -37.09545 -35.91979 -34.76651 -32.37875 -31.53542 -30.61010 -29.47637 -28.02881 -27.72817 -27.55798 -25.99462 -24.23041 -22.86758 -22.52401 -21.49187 -21.27852 -19.91124 -18.97163 -17.22226 -16.93857 -16.54575 -16.47101 -16.26919 -15.91438 -15.81222 -15.53547 -15.07194 -14.91862 -14.62808 -14.48360 -14.10232 -14.06740 -13.68096 -13.44455 -13.08577 -12.87460 -12.78631 -12.61456 -12.37699 -12.22715 -12.11620 -11.86538 -11.81769 -11.55012 -11.41809 -11.27512 -11.13691 -11.02251 -10.88621 -10.67116 -10.60015 -10.01345 -9.79002 -9.57914 -9.14622 -8.86861 -8.50863 -8.45320 -8.14081 -7.29125 -5.98355 -3.94676 1.09377 1.14986 2.80022 3.06611 3.32976 3.40746 3.41291 3.43953 4.20983 4.46670 4.48387 4.64400 4.70750 4.73851 4.76333 4.78623 4.82650 4.88754 4.94780 5.01183 5.08195 5.19296 5.24855 5.27250 5.31159 5.32146 5.38969 5.45757 5.55016 5.62947 5.69944 5.78034 5.85535 5.97386 6.05635 6.11650 6.22578 6.26213 6.35456 6.49739 6.72313 6.90268 6.91899 6.99914 7.04484 7.14838 7.47548 7.67973 7.93831 8.09926 8.15127 8.73341 9.10817 9.63659 11.14967 Molecular weight = 338.20amu Principal moments of inertia in cm(-1) A = 0.012777 B = 0.002315 C = 0.002109 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2190.838795 B =12090.774049 C =13274.848334 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.318 6.318 3 C 0.163 3.837 4 C -0.244 4.244 5 C -0.024 4.024 6 C -0.145 4.145 7 C 0.112 3.888 8 N -0.678 5.678 9 C 0.029 3.971 10 C 0.116 3.884 11 H 0.107 0.893 12 O -0.538 6.538 13 C 0.024 3.976 14 N -0.521 5.521 15 C 0.036 3.964 16 C 0.161 3.839 17 C -0.505 4.505 18 H 0.081 0.919 19 C 0.067 3.933 20 N -0.902 5.902 21 Si 0.874 3.126 22 H -0.279 1.279 23 H -0.286 1.286 24 H -0.266 1.266 25 C 0.173 3.827 26 O -0.310 6.310 27 C 0.026 3.974 28 C -0.243 4.243 29 H 0.056 0.944 30 H 0.058 0.942 31 H 0.099 0.901 32 H 0.129 0.871 33 H 0.134 0.866 34 H 0.076 0.924 35 H 0.038 0.962 36 H 0.352 0.648 37 H 0.076 0.924 38 H 0.029 0.971 39 H 0.360 0.640 40 H 0.032 0.968 41 H 0.062 0.938 42 H 0.047 0.953 43 H 0.082 0.918 44 H 0.008 0.992 45 H 0.030 0.970 46 H -0.019 1.019 47 H 0.263 0.737 48 H 0.055 0.945 49 H 0.059 0.941 50 H 0.101 0.899 51 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.448 -17.083 24.902 30.686 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.232 6.232 3 C 0.117 3.883 4 C -0.263 4.263 5 C -0.042 4.042 6 C -0.147 4.147 7 C -0.016 4.016 8 N -0.311 5.311 9 C -0.101 4.101 10 C 0.056 3.944 11 H 0.125 0.875 12 O -0.341 6.341 13 C -0.106 4.106 14 N -0.244 5.244 15 C -0.112 4.112 16 C 0.035 3.965 17 C -0.543 4.543 18 H 0.099 0.901 19 C -0.134 4.134 20 N -0.541 5.541 21 Si 0.702 3.298 22 H -0.205 1.205 23 H -0.211 1.211 24 H -0.191 1.191 25 C 0.126 3.874 26 O -0.222 6.222 27 C -0.069 4.069 28 C -0.263 4.263 29 H 0.075 0.925 30 H 0.077 0.923 31 H 0.118 0.882 32 H 0.147 0.853 33 H 0.151 0.849 34 H 0.094 0.906 35 H 0.056 0.944 36 H 0.172 0.828 37 H 0.095 0.905 38 H 0.047 0.953 39 H 0.205 0.795 40 H 0.051 0.949 41 H 0.081 0.919 42 H 0.065 0.935 43 H 0.101 0.899 44 H 0.026 0.974 45 H 0.048 0.952 46 H -0.002 1.002 47 H 0.072 0.928 48 H 0.074 0.926 49 H 0.078 0.922 50 H 0.120 0.880 51 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -6.182 -17.326 23.862 30.129 hybrid contribution -0.410 0.750 1.340 1.589 sum -6.592 -16.576 25.201 30.876 Atomic orbital electron populations 1.23078 0.78079 1.03959 1.01643 1.86043 1.21654 1.27032 1.88431 1.18662 0.91511 0.84183 0.93902 1.21128 1.00110 0.92106 1.12989 1.20657 0.92759 0.97297 0.93531 1.19049 0.92908 0.93066 1.09641 1.20605 0.98130 0.92554 0.90340 1.60455 1.46111 1.04517 1.19972 1.22672 0.97185 0.92349 0.97883 1.21952 0.92891 0.86579 0.93002 0.87541 1.86708 1.33021 1.56376 1.57971 1.22729 0.98737 0.96711 0.92445 1.61853 1.12145 1.42949 1.07457 1.22268 0.93910 0.92095 1.02957 1.20235 0.89077 0.93010 0.94189 1.21030 0.99519 1.45077 0.88655 0.90134 1.24902 0.98360 0.95309 0.94866 1.69900 1.34978 1.49003 1.00223 0.86871 0.85493 0.78851 0.78610 1.20492 1.21141 1.19087 1.18515 0.82489 0.92607 0.93754 1.86096 1.15121 1.32849 1.88168 1.23105 0.96841 0.85386 1.01563 1.20317 0.92696 0.97449 1.15790 0.92524 0.92343 0.88228 0.85304 0.84858 0.90605 0.94366 0.82829 0.90526 0.95290 0.79521 0.94949 0.91922 0.93468 0.89914 0.97383 0.95226 1.00159 0.92752 0.92639 0.92249 0.88018 0.84683 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.16 9.81 101.05 0.99 1.15 16 2 O -0.32 -3.08 10.49 -19.42 -0.20 -3.29 16 3 C 0.16 1.72 6.68 -39.23 -0.26 1.46 16 4 C -0.24 -2.35 9.04 -39.41 -0.36 -2.71 16 5 C -0.02 -0.24 9.66 -39.63 -0.38 -0.62 16 6 C -0.15 -1.63 5.41 -104.45 -0.56 -2.20 16 7 C 0.11 1.25 5.47 -4.97 -0.03 1.22 16 8 N -0.68 -8.86 6.49 -115.06 -0.75 -9.60 16 9 C 0.03 0.37 5.39 -3.82 -0.02 0.35 16 10 C 0.12 1.87 3.30 -26.73 -0.09 1.78 16 11 H 0.11 2.07 6.78 -51.93 -0.35 1.71 16 12 O -0.54 -9.02 12.55 -35.23 -0.44 -9.46 16 13 C 0.02 0.40 4.66 -3.82 -0.02 0.38 16 14 N -0.52 -11.14 4.56 -244.36 -1.11 -12.26 16 15 C 0.04 0.70 9.37 60.07 0.56 1.27 16 16 C 0.16 4.04 3.62 -4.97 -0.02 4.02 16 17 C -0.50 -14.79 8.94 -34.44 -0.31 -15.10 16 18 H 0.08 2.57 7.41 -52.49 -0.39 2.18 16 19 C 0.07 1.99 5.47 -17.82 -0.10 1.89 16 20 N -0.90 -28.29 13.96 55.43 0.77 -27.51 16 21 Si 0.87 22.14 27.47 -169.99 -4.67 17.47 16 22 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 23 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 24 H -0.27 -6.51 6.54 56.52 0.37 -6.14 16 25 C 0.17 1.93 6.65 -39.24 -0.26 1.67 16 26 O -0.31 -3.22 9.67 -19.44 -0.19 -3.40 16 27 C 0.03 0.18 9.81 101.05 0.99 1.17 16 28 C -0.24 -2.57 8.97 -39.29 -0.35 -2.93 16 29 H 0.06 0.27 7.65 -51.93 -0.40 -0.13 16 30 H 0.06 0.31 7.67 -51.93 -0.40 -0.08 16 31 H 0.10 0.38 8.14 -51.93 -0.42 -0.05 16 32 H 0.13 0.95 6.29 -52.48 -0.33 0.62 16 33 H 0.13 1.13 8.03 -52.49 -0.42 0.71 16 34 H 0.08 0.76 8.00 -51.93 -0.42 0.35 16 35 H 0.04 0.42 7.85 -51.93 -0.41 0.01 16 36 H 0.35 4.90 8.05 -39.29 -0.32 4.58 16 37 H 0.08 0.93 8.14 -51.93 -0.42 0.51 16 38 H 0.03 0.33 8.14 -51.93 -0.42 -0.10 16 39 H 0.36 4.59 9.05 45.56 0.41 5.00 16 40 H 0.03 0.54 8.00 -51.93 -0.42 0.12 16 41 H 0.06 0.90 7.94 -51.93 -0.41 0.48 16 42 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 43 H 0.08 1.81 6.66 -51.93 -0.35 1.46 16 44 H 0.01 0.14 8.13 -51.93 -0.42 -0.28 16 45 H 0.03 0.76 5.69 -51.93 -0.30 0.47 16 46 H -0.02 -0.48 7.55 -51.93 -0.39 -0.87 16 47 H 0.26 7.71 8.31 -40.82 -0.34 7.37 16 48 H 0.05 0.32 7.66 -51.93 -0.40 -0.08 16 49 H 0.06 0.39 7.66 -51.93 -0.40 -0.01 16 50 H 0.10 0.52 8.14 -51.93 -0.42 0.10 16 51 H 0.14 1.22 6.30 -52.49 -0.33 0.89 16 LS Contribution 409.58 15.07 6.17 6.17 Total: -1.00 -34.82 409.58 -8.33 -43.16 By element: Atomic # 1 Polarization: 13.65 SS G_CDS: -7.71 Total: 5.94 kcal Atomic # 6 Polarization: -7.00 SS G_CDS: -0.21 Total: -7.21 kcal Atomic # 7 Polarization: -48.29 SS G_CDS: -1.09 Total: -49.38 kcal Atomic # 8 Polarization: -15.32 SS G_CDS: -0.83 Total: -16.15 kcal Atomic # 14 Polarization: 22.14 SS G_CDS: -4.67 Total: 17.47 kcal Total LS contribution 6.17 Total: 6.17 kcal Total: -34.82 -8.33 -43.16 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000516453022.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.897 kcal (2) G-P(sol) polarization free energy of solvation -34.821 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.719 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.335 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.156 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.053 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds