Wall clock time and date at job start Tue Mar 31 2020 21:57:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45202 * 1 3 3 C 1.34224 * 117.00030 * 2 1 4 4 O 1.20823 * 120.00393 * 359.97438 * 3 2 1 5 5 C 1.50702 * 119.99815 * 180.02562 * 3 2 1 6 6 C 1.53043 * 109.45929 * 179.97438 * 5 3 2 7 7 C 1.53193 * 109.31177 * 181.37068 * 6 5 3 8 8 N 1.46922 * 108.77923 * 305.37011 * 7 6 5 9 9 C 1.34781 * 120.63092 * 233.58776 * 8 7 6 10 10 O 1.21271 * 119.99735 * 359.97438 * 9 8 7 11 11 C 1.50700 * 120.00003 * 179.97438 * 9 8 7 12 12 N 1.46895 * 109.47153 * 186.19848 * 11 9 8 13 13 C 1.46847 * 110.99868 * 66.37536 * 12 11 9 14 14 C 1.53036 * 109.51065 * 185.84629 * 13 12 11 15 15 C 1.53125 * 109.28039 * 300.80359 * 14 13 12 16 16 C 1.50699 * 109.57447 * 177.60301 * 15 14 13 17 17 H 1.07998 * 120.00050 * 240.29809 * 16 15 14 18 18 C 1.37881 * 119.99968 * 60.29630 * 16 15 14 19 19 N 1.31512 * 120.00103 * 0.02562 * 18 16 15 20 20 Si 1.86807 * 120.00088 * 179.97438 * 18 16 15 21 21 H 1.48493 * 109.46728 * 59.99953 * 20 18 16 22 22 H 1.48500 * 109.47043 * 180.02562 * 20 18 16 23 23 H 1.48500 * 109.46888 * 300.00374 * 20 18 16 24 24 C 1.53112 * 109.15001 * 57.67559 * 15 14 13 25 25 C 1.46844 * 111.00021 * 190.58757 * 12 11 9 26 26 C 1.46932 * 118.73876 * 53.85669 * 8 7 6 27 27 C 1.53038 * 109.45200 * 300.06121 * 5 3 2 28 28 H 1.08997 * 109.47727 * 180.02562 * 1 2 3 29 29 H 1.09006 * 109.46706 * 299.99992 * 1 2 3 30 30 H 1.09000 * 109.47248 * 59.99734 * 1 2 3 31 31 H 1.09004 * 109.46051 * 60.03077 * 5 3 2 32 32 H 1.08999 * 109.49639 * 61.42645 * 6 5 3 33 33 H 1.08996 * 109.49646 * 301.32312 * 6 5 3 34 34 H 1.08991 * 109.58690 * 185.57715 * 7 6 5 35 35 H 1.09005 * 109.70433 * 65.22309 * 7 6 5 36 36 H 1.08999 * 109.46806 * 66.19626 * 11 9 8 37 37 H 1.08998 * 109.47053 * 306.20085 * 11 9 8 38 38 H 1.08992 * 109.46345 * 305.85613 * 13 12 11 39 39 H 1.09002 * 109.45994 * 65.83918 * 13 12 11 40 40 H 1.08996 * 109.50611 * 60.75804 * 14 13 12 41 41 H 1.09004 * 109.50305 * 180.87943 * 14 13 12 42 42 H 1.08999 * 109.53166 * 297.76698 * 15 14 13 43 43 H 0.97000 * 120.00391 * 179.97438 * 19 18 16 44 44 H 1.08997 * 109.50337 * 182.40217 * 24 15 14 45 45 H 1.09004 * 109.54187 * 62.30014 * 24 15 14 46 46 H 1.08999 * 109.46390 * 294.17394 * 25 12 11 47 47 H 1.08996 * 109.46689 * 54.15500 * 25 12 11 48 48 H 1.08996 * 109.58756 * 65.93025 * 26 8 7 49 49 H 1.09004 * 109.58567 * 186.35774 * 26 8 7 50 50 H 1.08995 * 109.49751 * 298.57591 * 27 5 3 51 51 H 1.09009 * 109.49237 * 58.66668 * 27 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1959 0.0000 4 8 1.4034 2.2093 -0.0005 5 6 3.5664 1.2748 -0.0006 6 6 4.0000 2.7425 -0.0011 7 6 5.5297 2.8187 -0.0363 8 7 6.0683 2.0307 1.0806 9 6 6.9351 2.5807 1.9540 10 8 7.2779 3.7364 1.8217 11 6 7.4784 1.7595 3.0948 12 7 8.2765 2.6183 3.9798 13 6 7.4308 3.6158 4.6480 14 6 8.3113 4.5810 5.4449 15 6 9.1175 3.7922 6.4805 16 6 10.0305 4.7284 7.2295 17 1 11.0998 4.5804 7.1975 18 6 9.5006 5.7740 7.9555 19 7 8.1984 5.9539 7.9948 20 14 10.6323 6.9342 8.8845 21 1 11.5577 7.5937 7.9286 22 1 9.8211 7.9651 9.5804 23 1 11.4175 6.1654 9.8832 24 6 9.9526 2.7284 5.7628 25 6 9.0248 1.8167 4.9564 26 6 5.6488 0.6299 1.2239 27 6 4.1136 0.5793 1.2480 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3633 0.5139 0.8901 30 1 -0.3634 0.5139 -0.8899 31 1 3.9555 0.7812 -0.8912 32 1 3.6322 3.2308 0.9013 33 1 3.5905 3.2425 -0.8788 34 1 5.8461 3.8570 0.0630 35 1 5.8963 2.4136 -0.9795 36 1 8.1064 0.9606 2.7006 37 1 6.6510 1.3271 3.6574 38 1 6.8661 4.1725 3.9003 39 1 6.7401 3.1118 5.3240 40 1 8.9931 5.0952 4.7676 41 1 7.6824 5.3118 5.9533 42 1 8.4366 3.3092 7.1814 43 1 7.8256 6.6893 8.5059 44 1 10.4963 2.1353 6.4982 45 1 10.6608 3.2130 5.0907 46 1 8.3264 1.3213 5.6309 47 1 9.6178 1.0669 4.4328 48 1 6.0228 0.0484 0.3813 49 1 6.0438 0.2236 2.1551 50 1 3.7446 1.0876 2.1387 51 1 3.7848 -0.4600 1.2591 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000542878525.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:57:51 Heat of formation + Delta-G solvation = -142.915921 kcal Electronic energy + Delta-G solvation = -30245.968350 eV Core-core repulsion = 26144.120270 eV Total energy + Delta-G solvation = -4101.848080 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.204 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -41.87869 -41.11925 -39.54266 -38.27849 -37.46949 -35.67936 -34.27012 -33.30098 -32.19610 -31.43699 -29.40888 -28.83630 -27.16840 -26.14077 -24.27334 -23.78656 -23.42711 -22.80155 -21.34827 -20.36170 -19.95036 -18.74427 -18.42920 -18.24411 -17.62565 -17.28579 -17.01029 -16.64501 -16.58607 -16.05954 -15.52537 -15.30859 -15.14630 -14.85693 -14.78355 -14.72203 -14.37690 -14.29153 -14.04102 -13.80121 -13.76226 -13.46697 -13.14307 -13.04942 -12.89457 -12.81023 -12.77233 -12.53604 -12.38263 -12.26269 -12.00895 -11.91303 -11.86134 -11.79886 -11.70054 -11.45982 -11.32599 -10.89059 -10.79295 -10.50641 -10.35993 -9.64754 -9.13352 -8.07351 -6.20787 1.10804 1.39997 1.42662 1.49748 1.64315 1.73392 1.96899 2.43902 3.06776 3.19381 3.42941 3.64231 3.65631 3.76836 4.01561 4.17239 4.17981 4.27008 4.27984 4.29503 4.30806 4.31552 4.38358 4.41959 4.49216 4.61453 4.65390 4.69511 4.72986 4.75966 4.80218 4.85374 4.92025 4.96633 5.02156 5.05952 5.10882 5.22411 5.24486 5.34604 5.36218 5.55831 5.60784 5.63813 5.99293 6.01126 6.18948 6.30447 6.41560 6.48382 6.67038 6.91379 7.29379 7.46697 8.97139 Molecular weight = 338.20amu Principal moments of inertia in cm(-1) A = 0.020041 B = 0.002182 C = 0.002115 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1396.822572 B =12827.322599 C =13234.327983 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.356 6.356 3 C 0.464 3.536 4 O -0.544 6.544 5 C -0.072 4.072 6 C -0.112 4.112 7 C 0.116 3.884 8 N -0.617 5.617 9 C 0.510 3.490 10 O -0.568 6.568 11 C 0.038 3.962 12 N -0.537 5.537 13 C 0.076 3.924 14 C -0.091 4.091 15 C 0.044 3.956 16 C -0.533 4.533 17 H 0.053 0.947 18 C 0.008 3.992 19 N -0.920 5.920 20 Si 0.954 3.046 21 H -0.274 1.274 22 H -0.285 1.285 23 H -0.267 1.267 24 C -0.101 4.101 25 C 0.069 3.931 26 C 0.105 3.895 27 C -0.123 4.123 28 H 0.134 0.866 29 H 0.055 0.945 30 H 0.061 0.939 31 H 0.147 0.853 32 H 0.045 0.955 33 H 0.087 0.913 34 H 0.068 0.932 35 H 0.100 0.900 36 H 0.138 0.862 37 H 0.078 0.922 38 H 0.056 0.944 39 H 0.016 0.984 40 H 0.018 0.982 41 H 0.055 0.945 42 H -0.007 1.007 43 H 0.259 0.741 44 H 0.061 0.939 45 H 0.046 0.954 46 H 0.033 0.967 47 H 0.101 0.899 48 H 0.110 0.890 49 H 0.106 0.894 50 H 0.053 0.947 51 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.610 -20.800 -20.092 31.549 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.272 6.272 3 C 0.309 3.691 4 O -0.434 6.434 5 C -0.091 4.091 6 C -0.151 4.151 7 C -0.007 4.007 8 N -0.352 5.352 9 C 0.298 3.702 10 O -0.446 6.446 11 C -0.092 4.092 12 N -0.263 5.263 13 C -0.052 4.052 14 C -0.129 4.129 15 C 0.026 3.974 16 C -0.571 4.571 17 H 0.071 0.929 18 C -0.190 4.190 19 N -0.560 5.560 20 Si 0.780 3.220 21 H -0.200 1.200 22 H -0.210 1.210 23 H -0.192 1.192 24 C -0.139 4.139 25 C -0.058 4.058 26 C -0.016 4.016 27 C -0.161 4.161 28 H 0.152 0.848 29 H 0.073 0.927 30 H 0.079 0.921 31 H 0.165 0.835 32 H 0.064 0.936 33 H 0.105 0.895 34 H 0.086 0.914 35 H 0.118 0.882 36 H 0.156 0.844 37 H 0.096 0.904 38 H 0.074 0.926 39 H 0.034 0.966 40 H 0.037 0.963 41 H 0.073 0.927 42 H 0.011 0.989 43 H 0.068 0.932 44 H 0.080 0.920 45 H 0.064 0.936 46 H 0.051 0.949 47 H 0.119 0.881 48 H 0.128 0.872 49 H 0.125 0.875 50 H 0.072 0.928 51 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -12.450 -19.547 -20.358 30.847 hybrid contribution -0.734 1.219 1.296 1.924 sum -13.184 -18.328 -19.062 29.548 Atomic orbital electron populations 1.23529 0.75148 1.05727 1.02202 1.86492 1.24613 1.32590 1.83534 1.24268 0.92830 0.81094 0.70909 1.90684 1.68171 1.37757 1.46793 1.21158 0.85506 0.98493 1.03939 1.21741 0.95326 0.94844 1.03179 1.21561 0.91974 0.97264 0.89874 1.48293 1.44693 1.14011 1.28159 1.21042 0.78396 0.87332 0.83400 1.90709 1.59731 1.19706 1.74423 1.22134 0.98633 0.95477 0.92966 1.61551 1.27715 1.15574 1.21435 1.21947 0.94087 0.93971 0.95160 1.21360 0.97878 0.97959 0.95747 1.18667 0.93589 0.92977 0.92178 1.21592 0.93434 1.12613 1.29456 0.92913 1.25802 0.96403 0.99269 0.97537 1.70025 1.12010 1.31662 1.42271 0.85669 0.78883 0.78620 0.78833 1.19951 1.21048 1.19217 1.21553 0.97762 0.96949 0.97656 1.22110 0.96021 0.94777 0.92908 1.22185 0.93466 0.80272 1.05707 1.22027 0.95953 1.02918 0.95230 0.84829 0.92653 0.92063 0.83540 0.93570 0.89473 0.91391 0.88188 0.84447 0.90428 0.92573 0.96595 0.96265 0.92668 0.98926 0.93195 0.91993 0.93565 0.94881 0.88085 0.87152 0.87545 0.92771 0.86399 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.27 10.56 113.37 1.20 1.46 16 2 O -0.36 -4.77 10.44 -51.36 -0.54 -5.31 16 3 C 0.46 7.81 7.25 71.24 0.52 8.33 16 4 O -0.54 -13.48 15.73 21.97 0.35 -13.13 16 5 C -0.07 -0.82 2.59 -11.51 -0.03 -0.85 16 6 C -0.11 -1.89 4.65 30.67 0.14 -1.74 16 7 C 0.12 2.06 6.43 86.36 0.56 2.61 16 8 N -0.62 -11.50 2.97 -818.08 -2.43 -13.93 16 9 C 0.51 14.35 7.23 87.66 0.63 14.99 16 10 O -0.57 -22.60 14.12 -3.00 -0.04 -22.65 16 11 C 0.04 0.94 3.88 85.56 0.33 1.27 16 12 N -0.54 -19.29 4.35 -900.95 -3.92 -23.21 16 13 C 0.08 3.33 5.12 86.33 0.44 3.77 16 14 C -0.09 -4.84 5.12 30.65 0.16 -4.68 16 15 C 0.04 2.35 2.16 -11.46 -0.02 2.33 16 16 C -0.53 -30.92 8.56 25.60 0.22 -30.70 16 17 H 0.05 2.98 7.74 -2.91 -0.02 2.96 16 18 C 0.01 0.46 5.31 84.66 0.45 0.91 16 19 N -0.92 -56.02 11.37 21.45 0.24 -55.78 16 20 Si 0.95 45.72 29.54 68.60 2.03 47.75 16 21 H -0.27 -12.90 7.11 99.48 0.71 -12.20 16 22 H -0.28 -13.39 7.11 99.48 0.71 -12.68 16 23 H -0.27 -12.24 7.11 99.48 0.71 -11.53 16 24 C -0.10 -4.28 5.32 30.65 0.16 -4.12 16 25 C 0.07 2.27 5.46 86.33 0.47 2.74 16 26 C 0.11 0.91 6.37 86.51 0.55 1.46 16 27 C -0.12 -1.14 5.31 30.82 0.16 -0.97 16 28 H 0.13 0.43 8.14 -2.39 -0.02 0.41 16 29 H 0.05 0.64 8.13 -2.38 -0.02 0.62 16 30 H 0.06 0.63 8.13 -2.39 -0.02 0.61 16 31 H 0.15 0.72 8.14 -2.38 -0.02 0.70 16 32 H 0.05 1.07 8.13 -2.39 -0.02 1.05 16 33 H 0.09 1.41 8.07 -2.39 -0.02 1.39 16 34 H 0.07 1.69 7.00 -2.39 -0.02 1.67 16 35 H 0.10 1.17 8.14 -2.38 -0.02 1.16 16 36 H 0.14 2.30 7.96 -2.39 -0.02 2.28 16 37 H 0.08 1.60 7.36 -2.39 -0.02 1.58 16 38 H 0.06 2.57 6.05 -2.39 -0.01 2.56 16 39 H 0.02 0.69 8.14 -2.39 -0.02 0.67 16 40 H 0.02 1.06 8.14 -2.39 -0.02 1.04 16 41 H 0.05 3.29 6.18 -2.38 -0.01 3.27 16 42 H -0.01 -0.43 8.14 -2.39 -0.02 -0.44 16 43 H 0.26 15.05 8.31 -92.71 -0.77 14.28 16 44 H 0.06 2.44 8.14 -2.39 -0.02 2.42 16 45 H 0.05 2.04 8.14 -2.39 -0.02 2.02 16 46 H 0.03 1.05 8.14 -2.39 -0.02 1.03 16 47 H 0.10 2.53 8.01 -2.39 -0.02 2.51 16 48 H 0.11 0.32 8.14 -2.39 -0.02 0.30 16 49 H 0.11 0.70 5.88 -2.39 -0.01 0.69 16 50 H 0.05 0.77 8.14 -2.39 -0.02 0.75 16 51 H 0.12 0.53 8.08 -2.38 -0.02 0.51 16 Total: -1.00 -82.35 395.76 2.53 -79.81 By element: Atomic # 1 Polarization: 8.73 SS G_CDS: 0.90 Total: 9.64 kcal Atomic # 6 Polarization: -9.14 SS G_CDS: 5.94 Total: -3.20 kcal Atomic # 7 Polarization: -86.81 SS G_CDS: -6.10 Total: -92.91 kcal Atomic # 8 Polarization: -40.85 SS G_CDS: -0.23 Total: -41.08 kcal Atomic # 14 Polarization: 45.72 SS G_CDS: 2.03 Total: 47.75 kcal Total: -82.35 2.53 -79.81 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000542878525.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.103 kcal (2) G-P(sol) polarization free energy of solvation -82.348 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -145.451 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.535 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.813 kcal (6) G-S(sol) free energy of system = (1) + (5) -142.916 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds