Wall clock time and date at job start Tue Mar 31 2020 21:17:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35984 * 117.00508 * 2 1 4 4 C 1.38720 * 119.99296 * 0.02562 * 3 2 1 5 5 C 1.38115 * 119.99623 * 179.97438 * 4 3 2 6 6 C 1.38716 * 120.00170 * 0.02562 * 5 4 3 7 7 O 1.35980 * 120.00405 * 180.02562 * 6 5 4 8 8 C 1.42905 * 116.99634 * 359.97438 * 7 6 5 9 9 C 1.38683 * 119.99917 * 0.27392 * 6 5 4 10 10 C 1.50691 * 119.99947 * 179.72755 * 9 6 5 11 11 N 1.46902 * 109.47232 * 80.00220 * 10 9 6 12 12 C 1.46902 * 111.00256 * 180.02562 * 11 10 9 13 13 C 1.52998 * 109.47217 * 179.97438 * 12 11 10 14 14 H 1.08999 * 109.47216 * 304.99405 * 13 12 11 15 15 O 1.42900 * 109.46959 * 64.99847 * 13 12 11 16 16 C 1.53002 * 109.47007 * 184.99500 * 13 12 11 17 17 N 1.46897 * 109.47142 * 179.97438 * 16 13 12 18 18 C 1.46898 * 111.00583 * 293.95956 * 17 16 13 19 19 C 1.46903 * 111.00087 * 170.00294 * 17 16 13 20 20 C 1.50698 * 109.46968 * 190.00661 * 19 17 16 21 21 H 1.07992 * 120.00338 * 359.97438 * 20 19 17 22 22 C 1.37888 * 119.99767 * 179.97438 * 20 19 17 23 23 N 1.31511 * 119.99587 * 179.97438 * 22 20 19 24 24 Si 1.86797 * 120.00008 * 359.97438 * 22 20 19 25 25 H 1.48506 * 109.47136 * 89.99710 * 24 22 20 26 26 H 1.48493 * 109.47168 * 210.00102 * 24 22 20 27 27 H 1.48503 * 109.47234 * 330.00185 * 24 22 20 28 28 C 1.38157 * 119.99683 * 359.46982 * 9 6 5 29 29 H 1.09000 * 109.46792 * 300.00017 * 1 2 3 30 30 H 1.09000 * 109.47402 * 59.99586 * 1 2 3 31 31 H 1.09002 * 109.47552 * 179.97438 * 1 2 3 32 32 H 1.08000 * 120.00392 * 359.97438 * 4 3 2 33 33 H 1.08002 * 119.99769 * 179.97438 * 5 4 3 34 34 H 1.09001 * 109.47103 * 60.00556 * 8 7 6 35 35 H 1.09004 * 109.47054 * 180.02562 * 8 7 6 36 36 H 1.09000 * 109.47187 * 300.00116 * 8 7 6 37 37 H 1.09007 * 109.47115 * 199.99848 * 10 9 6 38 38 H 1.08996 * 109.47760 * 320.00035 * 10 9 6 39 39 H 1.00904 * 110.99891 * 303.94868 * 11 10 9 40 40 H 1.08999 * 109.47059 * 299.99936 * 12 11 10 41 41 H 1.09001 * 109.47151 * 59.99585 * 12 11 10 42 42 H 0.96699 * 113.99934 * 60.00277 * 15 13 12 43 43 H 1.08999 * 109.47732 * 300.00326 * 16 13 12 44 44 H 1.09004 * 109.46987 * 60.00170 * 16 13 12 45 45 H 1.09004 * 109.46764 * 59.99381 * 18 17 16 46 46 H 1.08998 * 109.47209 * 179.97438 * 18 17 16 47 47 H 1.09001 * 109.46709 * 299.99671 * 18 17 16 48 48 H 1.09005 * 109.46869 * 310.00190 * 19 17 16 49 49 H 1.08991 * 109.47347 * 70.00392 * 19 17 16 50 50 H 0.97004 * 119.99418 * 180.02562 * 23 22 20 51 51 H 1.08001 * 120.00006 * 180.23452 * 28 9 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2116 0.0000 4 6 1.2909 2.3750 0.0005 5 6 1.9179 3.6055 0.0011 6 6 3.3032 3.6781 0.0005 7 8 3.9206 4.8897 0.0016 8 6 3.0806 6.0458 0.0027 9 6 4.0585 2.5150 -0.0063 10 6 5.5633 2.5939 -0.0131 11 7 6.0461 2.8558 1.3494 12 6 7.5124 2.9400 1.3813 13 6 7.9765 3.2136 2.8133 14 1 7.4816 4.1083 3.1910 15 8 7.6436 2.0988 3.6431 16 6 9.4918 3.4248 2.8268 17 7 9.9373 3.6881 4.2016 18 6 9.4021 4.9647 4.6932 19 6 11.4032 3.6612 4.2942 20 6 11.8154 3.6886 5.7434 21 1 11.0639 3.7229 6.5181 22 6 13.1524 3.6698 6.0803 23 7 13.5122 3.6942 7.3450 24 14 14.4525 3.6097 4.7403 25 1 14.8255 4.9931 4.3500 26 1 15.6529 2.8975 5.2469 27 1 13.9124 2.8907 3.5585 28 6 3.4312 1.2841 -0.0015 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3634 -1.0277 -0.0005 32 1 0.2124 2.3185 0.0005 33 1 1.3297 4.5113 0.0011 34 1 2.4515 6.0370 0.8927 35 1 3.6985 6.9438 0.0030 36 1 2.4513 6.0385 -0.8873 37 1 5.9751 1.6495 -0.3691 38 1 5.8820 3.4009 -0.6728 39 1 5.6280 3.6931 1.7265 40 1 7.9380 1.9983 1.0347 41 1 7.8441 3.7496 0.7313 42 1 8.0503 1.2665 3.3654 43 1 9.9868 2.5302 2.4491 44 1 9.7457 4.2751 2.1938 45 1 8.3126 4.9314 4.6791 46 1 9.7469 5.1346 5.7131 47 1 9.7491 5.7751 4.0521 48 1 11.7802 2.7518 3.8263 49 1 11.8155 4.5308 3.7826 50 1 14.4527 3.6813 7.5819 51 1 4.0194 0.3783 -0.0029 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000562733773.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:17:24 Heat of formation + Delta-G solvation = -83.388478 kcal Electronic energy + Delta-G solvation = -29022.658826 eV Core-core repulsion = 24923.392050 eV Total energy + Delta-G solvation = -4099.266776 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.204 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -40.86094 -39.30810 -38.28244 -36.99302 -35.92249 -34.90889 -32.43172 -31.98103 -30.32752 -29.51937 -27.98691 -27.59953 -27.22961 -26.37316 -24.73019 -22.97307 -22.56010 -21.51294 -21.03107 -20.05395 -18.40358 -17.87112 -17.19865 -16.89851 -16.36756 -16.23803 -15.88336 -15.68643 -15.25849 -15.07584 -14.79693 -14.71055 -14.59396 -14.15237 -14.05918 -13.81997 -13.50604 -13.15973 -13.01340 -12.83637 -12.71456 -12.42463 -12.24806 -12.13485 -11.96486 -11.88853 -11.77460 -11.55238 -11.19906 -10.99178 -10.93900 -10.77046 -10.66260 -10.66009 -10.19213 -9.86973 -9.49449 -9.29066 -9.14933 -8.54582 -8.43704 -8.02254 -7.29145 -6.01485 -3.98282 0.89159 1.15189 2.89501 3.03030 3.29520 3.33560 3.37206 3.38947 4.10803 4.34262 4.38990 4.44480 4.65447 4.70024 4.74190 4.76683 4.79840 4.80534 4.84618 4.95286 5.07555 5.11585 5.13498 5.16383 5.18894 5.30273 5.39578 5.48863 5.50885 5.55440 5.64204 5.68879 5.85996 5.91585 5.98092 5.99890 6.16536 6.26262 6.29909 6.38082 6.73926 6.86134 6.87622 6.94339 7.03218 7.15025 7.30095 7.63359 7.94629 8.06010 8.22047 8.70610 9.08731 9.60177 11.11754 Molecular weight = 338.20amu Principal moments of inertia in cm(-1) A = 0.020041 B = 0.001873 C = 0.001800 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1396.790009 B =14948.953819 C =15555.294642 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.317 6.317 3 C 0.091 3.909 4 C -0.170 4.170 5 C -0.169 4.169 6 C 0.098 3.902 7 O -0.316 6.316 8 C 0.028 3.972 9 C -0.069 4.069 10 C 0.107 3.893 11 N -0.671 5.671 12 C 0.027 3.973 13 C 0.118 3.882 14 H 0.092 0.908 15 O -0.534 6.534 16 C 0.021 3.979 17 N -0.519 5.519 18 C 0.036 3.964 19 C 0.162 3.838 20 C -0.507 4.507 21 H 0.082 0.918 22 C 0.067 3.933 23 N -0.900 5.900 24 Si 0.876 3.124 25 H -0.279 1.279 26 H -0.286 1.286 27 H -0.268 1.268 28 C -0.092 4.092 29 H 0.054 0.946 30 H 0.052 0.948 31 H 0.099 0.901 32 H 0.129 0.871 33 H 0.130 0.870 34 H 0.055 0.945 35 H 0.100 0.900 36 H 0.052 0.948 37 H 0.080 0.920 38 H 0.043 0.957 39 H 0.344 0.656 40 H 0.076 0.924 41 H 0.035 0.965 42 H 0.368 0.632 43 H 0.070 0.930 44 H 0.027 0.973 45 H 0.050 0.950 46 H 0.080 0.920 47 H 0.008 0.992 48 H 0.027 0.973 49 H -0.019 1.019 50 H 0.263 0.737 51 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.756 -0.628 -21.177 34.918 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.231 6.231 3 C 0.047 3.953 4 C -0.189 4.189 5 C -0.188 4.188 6 C 0.052 3.948 7 O -0.229 6.229 8 C -0.067 4.067 9 C -0.070 4.070 10 C -0.022 4.022 11 N -0.302 5.302 12 C -0.103 4.103 13 C 0.058 3.942 14 H 0.110 0.890 15 O -0.337 6.337 16 C -0.109 4.109 17 N -0.242 5.242 18 C -0.113 4.113 19 C 0.035 3.965 20 C -0.545 4.545 21 H 0.100 0.900 22 C -0.135 4.135 23 N -0.540 5.540 24 Si 0.704 3.296 25 H -0.205 1.205 26 H -0.212 1.212 27 H -0.193 1.193 28 C -0.111 4.111 29 H 0.073 0.927 30 H 0.071 0.929 31 H 0.118 0.882 32 H 0.147 0.853 33 H 0.148 0.852 34 H 0.074 0.926 35 H 0.118 0.882 36 H 0.071 0.929 37 H 0.099 0.901 38 H 0.061 0.939 39 H 0.163 0.837 40 H 0.094 0.906 41 H 0.053 0.947 42 H 0.215 0.785 43 H 0.089 0.911 44 H 0.045 0.955 45 H 0.069 0.931 46 H 0.099 0.901 47 H 0.026 0.974 48 H 0.045 0.955 49 H -0.001 1.001 50 H 0.073 0.927 51 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -27.827 -1.352 -20.248 34.440 hybrid contribution 1.007 1.478 -1.954 2.649 sum -26.819 0.126 -22.202 34.817 Atomic orbital electron populations 1.23029 0.78607 1.03922 1.01129 1.86092 1.21130 1.26633 1.89249 1.18864 0.92212 0.84215 1.00040 1.20999 0.99914 0.91704 1.06306 1.20964 0.93141 0.98375 1.06337 1.18743 0.90764 0.85281 0.99965 1.86077 1.35544 1.12200 1.89126 1.23044 0.95938 0.86550 1.01155 1.18907 0.95492 0.89682 1.02961 1.20698 0.89365 1.01469 0.90660 1.60465 1.06046 1.44065 1.19624 1.22738 0.88201 1.01167 0.98192 1.21820 0.93480 0.90773 0.88134 0.89044 1.86608 1.73855 1.18366 1.54889 1.22790 0.95641 1.00488 0.91943 1.61840 1.12271 1.32576 1.17542 1.22286 0.98283 0.89055 1.01661 1.20208 0.82895 0.94924 0.98446 1.21054 0.92844 1.49914 0.90690 0.90024 1.24913 0.98352 0.94994 0.95202 1.69899 1.16738 1.51221 1.16105 0.86853 0.81702 0.78371 0.82721 1.20457 1.21150 1.19287 1.20137 0.91158 0.97530 1.02311 0.92732 0.92894 0.88249 0.85328 0.85238 0.92614 0.88208 0.92898 0.90128 0.93890 0.83727 0.90594 0.94654 0.78543 0.91134 0.95478 0.93133 0.90132 0.97389 0.95526 1.00109 0.92713 0.84261 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.15 9.81 101.05 0.99 1.14 16 2 O -0.32 -2.99 10.50 -19.69 -0.21 -3.20 16 3 C 0.09 0.90 6.69 -39.24 -0.26 0.64 16 4 C -0.17 -1.43 9.03 -39.45 -0.36 -1.79 16 5 C -0.17 -1.44 9.03 -39.45 -0.36 -1.80 16 6 C 0.10 0.98 6.65 -39.24 -0.26 0.71 16 7 O -0.32 -2.99 9.67 -19.68 -0.19 -3.18 16 8 C 0.03 0.17 9.81 101.05 0.99 1.16 16 9 C -0.07 -0.73 5.40 -104.49 -0.56 -1.29 16 10 C 0.11 1.09 5.47 -4.98 -0.03 1.07 16 11 N -0.67 -7.86 6.44 -115.06 -0.74 -8.60 16 12 C 0.03 0.32 5.32 -3.82 -0.02 0.30 16 13 C 0.12 1.72 3.02 -26.73 -0.08 1.64 16 14 H 0.09 1.38 6.55 -51.93 -0.34 1.04 16 15 O -0.53 -8.75 13.15 -35.23 -0.46 -9.21 16 16 C 0.02 0.36 4.62 -3.83 -0.02 0.34 16 17 N -0.52 -11.15 4.62 -244.37 -1.13 -12.28 16 18 C 0.04 0.71 9.14 60.06 0.55 1.26 16 19 C 0.16 4.01 3.79 -4.98 -0.02 3.99 16 20 C -0.51 -14.73 9.01 -34.44 -0.31 -15.04 16 21 H 0.08 2.60 7.37 -52.49 -0.39 2.21 16 22 C 0.07 1.96 5.47 -17.82 -0.10 1.87 16 23 N -0.90 -27.99 13.96 55.43 0.77 -27.21 16 24 Si 0.88 21.79 27.47 -169.99 -4.67 17.12 16 25 H -0.28 -6.82 7.11 56.52 0.40 -6.41 16 26 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 27 H -0.27 -6.40 6.54 56.52 0.37 -6.03 16 28 C -0.09 -0.95 9.60 -39.45 -0.38 -1.33 16 29 H 0.05 0.25 7.66 -51.93 -0.40 -0.15 16 30 H 0.05 0.22 7.66 -51.93 -0.40 -0.18 16 31 H 0.10 0.35 8.14 -51.93 -0.42 -0.07 16 32 H 0.13 0.77 6.29 -52.49 -0.33 0.44 16 33 H 0.13 0.80 6.29 -52.49 -0.33 0.47 16 34 H 0.06 0.29 7.66 -51.93 -0.40 -0.11 16 35 H 0.10 0.45 8.14 -51.93 -0.42 0.03 16 36 H 0.05 0.25 7.66 -51.93 -0.40 -0.15 16 37 H 0.08 0.76 8.01 -51.93 -0.42 0.34 16 38 H 0.04 0.44 7.85 -51.93 -0.41 0.03 16 39 H 0.34 4.20 8.66 -39.29 -0.34 3.86 16 40 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 41 H 0.04 0.39 8.14 -51.93 -0.42 -0.03 16 42 H 0.37 5.04 9.05 45.56 0.41 5.45 16 43 H 0.07 1.14 7.93 -51.93 -0.41 0.73 16 44 H 0.03 0.44 8.12 -51.93 -0.42 0.02 16 45 H 0.05 0.89 6.47 -51.93 -0.34 0.56 16 46 H 0.08 1.80 6.76 -51.93 -0.35 1.45 16 47 H 0.01 0.15 8.14 -51.93 -0.42 -0.28 16 48 H 0.03 0.66 6.99 -51.93 -0.36 0.30 16 49 H -0.02 -0.46 7.55 -51.93 -0.39 -0.86 16 50 H 0.26 7.64 8.31 -40.82 -0.34 7.30 16 51 H 0.14 1.33 8.04 -52.49 -0.42 0.91 16 LS Contribution 410.01 15.07 6.18 6.18 Total: -1.00 -34.49 410.01 -8.38 -42.87 By element: Atomic # 1 Polarization: 12.37 SS G_CDS: -7.71 Total: 4.66 kcal Atomic # 6 Polarization: -6.92 SS G_CDS: -0.22 Total: -7.14 kcal Atomic # 7 Polarization: -47.00 SS G_CDS: -1.10 Total: -48.10 kcal Atomic # 8 Polarization: -14.73 SS G_CDS: -0.86 Total: -15.59 kcal Atomic # 14 Polarization: 21.79 SS G_CDS: -4.67 Total: 17.12 kcal Total LS contribution 6.18 Total: 6.18 kcal Total: -34.49 -8.38 -42.87 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000562733773.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.519 kcal (2) G-P(sol) polarization free energy of solvation -34.494 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.013 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.375 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.869 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.388 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds