Wall clock time and date at job start Tue Mar 31 2020 21:17:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35984 * 117.00508 * 2 1 4 4 C 1.38720 * 119.99296 * 0.02562 * 3 2 1 5 5 C 1.38115 * 119.99623 * 179.97438 * 4 3 2 6 6 C 1.38716 * 120.00170 * 0.02562 * 5 4 3 7 7 O 1.35980 * 120.00405 * 180.02562 * 6 5 4 8 8 C 1.42905 * 116.99634 * 359.97438 * 7 6 5 9 9 C 1.38683 * 119.99917 * 0.27392 * 6 5 4 10 10 C 1.50691 * 119.99947 * 179.72755 * 9 6 5 11 11 N 1.46902 * 109.47232 * 80.00220 * 10 9 6 12 12 C 1.46902 * 111.00256 * 180.02562 * 11 10 9 13 13 C 1.52998 * 109.47217 * 179.97438 * 12 11 10 14 14 H 1.08999 * 109.47216 * 304.99405 * 13 12 11 15 15 O 1.42900 * 109.46959 * 64.99847 * 13 12 11 16 16 C 1.53002 * 109.47007 * 184.99500 * 13 12 11 17 17 N 1.46897 * 109.47142 * 179.97438 * 16 13 12 18 18 C 1.46898 * 111.00583 * 293.95956 * 17 16 13 19 19 C 1.46903 * 111.00087 * 170.00294 * 17 16 13 20 20 C 1.50698 * 109.46968 * 190.00661 * 19 17 16 21 21 H 1.07992 * 120.00338 * 359.97438 * 20 19 17 22 22 C 1.37888 * 119.99767 * 179.97438 * 20 19 17 23 23 N 1.31511 * 119.99587 * 179.97438 * 22 20 19 24 24 Si 1.86797 * 120.00008 * 359.97438 * 22 20 19 25 25 H 1.48506 * 109.47136 * 89.99710 * 24 22 20 26 26 H 1.48493 * 109.47168 * 210.00102 * 24 22 20 27 27 H 1.48503 * 109.47234 * 330.00185 * 24 22 20 28 28 C 1.38157 * 119.99683 * 359.46982 * 9 6 5 29 29 H 1.09000 * 109.46792 * 300.00017 * 1 2 3 30 30 H 1.09000 * 109.47402 * 59.99586 * 1 2 3 31 31 H 1.09002 * 109.47552 * 179.97438 * 1 2 3 32 32 H 1.08000 * 120.00392 * 359.97438 * 4 3 2 33 33 H 1.08002 * 119.99769 * 179.97438 * 5 4 3 34 34 H 1.09001 * 109.47103 * 60.00556 * 8 7 6 35 35 H 1.09004 * 109.47054 * 180.02562 * 8 7 6 36 36 H 1.09000 * 109.47187 * 300.00116 * 8 7 6 37 37 H 1.09007 * 109.47115 * 199.99848 * 10 9 6 38 38 H 1.08996 * 109.47760 * 320.00035 * 10 9 6 39 39 H 1.00904 * 110.99891 * 303.94868 * 11 10 9 40 40 H 1.08999 * 109.47059 * 299.99936 * 12 11 10 41 41 H 1.09001 * 109.47151 * 59.99585 * 12 11 10 42 42 H 0.96699 * 113.99934 * 60.00277 * 15 13 12 43 43 H 1.08999 * 109.47732 * 300.00326 * 16 13 12 44 44 H 1.09004 * 109.46987 * 60.00170 * 16 13 12 45 45 H 1.09004 * 109.46764 * 59.99381 * 18 17 16 46 46 H 1.08998 * 109.47209 * 179.97438 * 18 17 16 47 47 H 1.09001 * 109.46709 * 299.99671 * 18 17 16 48 48 H 1.09005 * 109.46869 * 310.00190 * 19 17 16 49 49 H 1.08991 * 109.47347 * 70.00392 * 19 17 16 50 50 H 0.97004 * 119.99418 * 180.02562 * 23 22 20 51 51 H 1.08001 * 120.00006 * 180.23452 * 28 9 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2116 0.0000 4 6 1.2909 2.3750 0.0005 5 6 1.9179 3.6055 0.0011 6 6 3.3032 3.6781 0.0005 7 8 3.9206 4.8897 0.0016 8 6 3.0806 6.0458 0.0027 9 6 4.0585 2.5150 -0.0063 10 6 5.5633 2.5939 -0.0131 11 7 6.0461 2.8558 1.3494 12 6 7.5124 2.9400 1.3813 13 6 7.9765 3.2136 2.8133 14 1 7.4816 4.1083 3.1910 15 8 7.6436 2.0988 3.6431 16 6 9.4918 3.4248 2.8268 17 7 9.9373 3.6881 4.2016 18 6 9.4021 4.9647 4.6932 19 6 11.4032 3.6612 4.2942 20 6 11.8154 3.6886 5.7434 21 1 11.0639 3.7229 6.5181 22 6 13.1524 3.6698 6.0803 23 7 13.5122 3.6942 7.3450 24 14 14.4525 3.6097 4.7403 25 1 14.8255 4.9931 4.3500 26 1 15.6529 2.8975 5.2469 27 1 13.9124 2.8907 3.5585 28 6 3.4312 1.2841 -0.0015 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3634 -1.0277 -0.0005 32 1 0.2124 2.3185 0.0005 33 1 1.3297 4.5113 0.0011 34 1 2.4515 6.0370 0.8927 35 1 3.6985 6.9438 0.0030 36 1 2.4513 6.0385 -0.8873 37 1 5.9751 1.6495 -0.3691 38 1 5.8820 3.4009 -0.6728 39 1 5.6280 3.6931 1.7265 40 1 7.9380 1.9983 1.0347 41 1 7.8441 3.7496 0.7313 42 1 8.0503 1.2665 3.3654 43 1 9.9868 2.5302 2.4491 44 1 9.7457 4.2751 2.1938 45 1 8.3126 4.9314 4.6791 46 1 9.7469 5.1346 5.7131 47 1 9.7491 5.7751 4.0521 48 1 11.7802 2.7518 3.8263 49 1 11.8155 4.5308 3.7826 50 1 14.4527 3.6813 7.5819 51 1 4.0194 0.3783 -0.0029 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000562733773.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:17:23 Heat of formation + Delta-G solvation = -111.957081 kcal Electronic energy + Delta-G solvation = -29023.897653 eV Core-core repulsion = 24923.392050 eV Total energy + Delta-G solvation = -4100.505603 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.204 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -41.50067 -39.92427 -39.54371 -37.82082 -37.18113 -35.96026 -34.58292 -32.80200 -31.22480 -30.63675 -29.46207 -28.40353 -27.73691 -27.57827 -26.02073 -24.28405 -23.21365 -22.53949 -22.10138 -21.65568 -19.04456 -19.01487 -18.48446 -17.85128 -17.45396 -17.00783 -16.78366 -16.69881 -16.40627 -16.04118 -15.97384 -15.67745 -15.62850 -15.51746 -15.22572 -14.84469 -14.59785 -14.42639 -14.12386 -13.77453 -13.63901 -13.50582 -13.36215 -13.22670 -13.00125 -12.78539 -12.62764 -12.56504 -12.46224 -12.42917 -12.39524 -12.26067 -11.81082 -11.60713 -11.58558 -11.48370 -11.33572 -10.78645 -10.66448 -9.97931 -9.30100 -8.95498 -8.68658 -8.27174 -6.30737 0.21292 0.46918 1.34499 1.36980 1.47914 2.34102 2.35161 2.47933 2.63169 3.02335 3.07031 3.49881 3.71476 3.77194 3.79962 3.95341 4.10436 4.16639 4.20103 4.27996 4.32288 4.37790 4.41441 4.42211 4.44833 4.48645 4.52108 4.56063 4.64360 4.68769 4.73408 4.74622 4.78815 4.79297 4.89679 4.90625 5.01901 5.14300 5.18928 5.24865 5.25990 5.32271 5.54294 5.62405 5.97594 6.04428 6.33129 6.37087 6.39963 6.54651 6.68102 6.75882 7.09080 7.32570 8.89724 Molecular weight = 338.20amu Principal moments of inertia in cm(-1) A = 0.020041 B = 0.001873 C = 0.001800 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1396.790009 B =14948.953819 C =15555.294642 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 O -0.338 6.338 3 C 0.078 3.922 4 C -0.169 4.169 5 C -0.171 4.171 6 C 0.087 3.913 7 O -0.333 6.333 8 C 0.020 3.980 9 C -0.085 4.085 10 C 0.113 3.887 11 N -0.679 5.679 12 C 0.039 3.961 13 C 0.127 3.873 14 H 0.085 0.915 15 O -0.556 6.556 16 C 0.022 3.978 17 N -0.540 5.540 18 C 0.042 3.958 19 C 0.172 3.828 20 C -0.517 4.517 21 H 0.034 0.966 22 C 0.004 3.996 23 N -0.949 5.949 24 Si 0.952 3.048 25 H -0.268 1.268 26 H -0.281 1.281 27 H -0.247 1.247 28 C -0.109 4.109 29 H 0.062 0.938 30 H 0.066 0.934 31 H 0.115 0.885 32 H 0.153 0.847 33 H 0.153 0.847 34 H 0.062 0.938 35 H 0.112 0.888 36 H 0.066 0.934 37 H 0.086 0.914 38 H 0.043 0.957 39 H 0.340 0.660 40 H 0.086 0.914 41 H 0.046 0.954 42 H 0.379 0.621 43 H 0.079 0.921 44 H 0.042 0.958 45 H 0.072 0.928 46 H 0.044 0.956 47 H 0.021 0.979 48 H 0.031 0.969 49 H -0.014 1.014 50 H 0.267 0.733 51 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.723 -0.327 -24.000 37.432 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 O -0.253 6.253 3 C 0.034 3.966 4 C -0.188 4.188 5 C -0.189 4.189 6 C 0.041 3.959 7 O -0.247 6.247 8 C -0.074 4.074 9 C -0.086 4.086 10 C -0.015 4.015 11 N -0.310 5.310 12 C -0.091 4.091 13 C 0.067 3.933 14 H 0.102 0.898 15 O -0.362 6.362 16 C -0.106 4.106 17 N -0.264 5.264 18 C -0.107 4.107 19 C 0.045 3.955 20 C -0.556 4.556 21 H 0.052 0.948 22 C -0.193 4.193 23 N -0.590 5.590 24 Si 0.775 3.225 25 H -0.193 1.193 26 H -0.207 1.207 27 H -0.171 1.171 28 C -0.128 4.128 29 H 0.080 0.920 30 H 0.084 0.916 31 H 0.134 0.866 32 H 0.171 0.829 33 H 0.171 0.829 34 H 0.081 0.919 35 H 0.130 0.870 36 H 0.084 0.916 37 H 0.104 0.896 38 H 0.061 0.939 39 H 0.158 0.842 40 H 0.104 0.896 41 H 0.064 0.936 42 H 0.226 0.774 43 H 0.098 0.902 44 H 0.060 0.940 45 H 0.091 0.909 46 H 0.063 0.937 47 H 0.040 0.960 48 H 0.049 0.951 49 H 0.004 0.996 50 H 0.076 0.924 51 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -28.829 -1.054 -23.094 36.953 hybrid contribution 1.142 1.395 -1.004 2.064 sum -27.687 0.341 -24.098 36.707 Atomic orbital electron populations 1.23307 0.76667 1.05433 1.02117 1.86061 1.23254 1.26689 1.89287 1.19034 0.92316 0.84965 1.00334 1.21297 1.01150 0.91148 1.05176 1.21269 0.92862 0.99378 1.05397 1.18905 0.91419 0.85425 1.00107 1.86049 1.36791 1.12721 1.89126 1.23284 0.96298 0.85739 1.02123 1.18982 0.95614 0.90120 1.03920 1.20652 0.89528 1.01631 0.89734 1.60455 1.05956 1.43898 1.20685 1.22564 0.88328 1.02085 0.96131 1.21738 0.91813 0.90090 0.89653 0.89761 1.86575 1.74247 1.19361 1.55999 1.22885 0.97110 1.01359 0.89295 1.61718 1.10280 1.33376 1.20998 1.22188 0.99502 0.89145 0.99825 1.19963 0.85266 0.95061 0.95258 1.21287 0.92261 1.49774 0.92232 0.94758 1.25911 1.01056 0.94394 0.97922 1.70065 1.17547 1.52610 1.18771 0.85654 0.78101 0.79086 0.79689 1.19324 1.20661 1.17056 1.20244 0.91824 0.97583 1.03145 0.91969 0.91569 0.86648 0.82920 0.82912 0.91924 0.87013 0.91572 0.89569 0.93903 0.84182 0.89568 0.93562 0.77361 0.90246 0.94015 0.90926 0.93657 0.96031 0.95063 0.99641 0.92449 0.84471 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.17 9.81 113.37 1.11 1.28 16 2 O -0.34 -6.14 10.50 -93.37 -0.98 -7.12 16 3 C 0.08 1.50 6.69 22.49 0.15 1.65 16 4 C -0.17 -2.56 9.03 22.36 0.20 -2.36 16 5 C -0.17 -2.59 9.03 22.35 0.20 -2.39 16 6 C 0.09 1.64 6.65 22.49 0.15 1.79 16 7 O -0.33 -5.88 9.67 -93.32 -0.90 -6.78 16 8 C 0.02 0.20 9.81 113.37 1.11 1.31 16 9 C -0.09 -1.74 5.40 -19.78 -0.11 -1.85 16 10 C 0.11 2.21 5.47 85.55 0.47 2.68 16 11 N -0.68 -15.11 6.44 -517.94 -3.34 -18.44 16 12 C 0.04 0.83 5.32 86.30 0.46 1.29 16 13 C 0.13 3.48 3.02 30.59 0.09 3.57 16 14 H 0.08 2.43 6.55 -2.39 -0.02 2.41 16 15 O -0.56 -17.72 13.15 -148.98 -1.96 -19.68 16 16 C 0.02 0.71 4.62 86.30 0.40 1.10 16 17 N -0.54 -22.86 4.62 -927.06 -4.28 -27.14 16 18 C 0.04 1.66 9.14 127.69 1.17 2.83 16 19 C 0.17 8.37 3.79 85.56 0.32 8.70 16 20 C -0.52 -30.81 9.01 25.60 0.23 -30.58 16 21 H 0.03 2.30 7.37 -2.91 -0.02 2.28 16 22 C 0.00 0.25 5.47 84.66 0.46 0.71 16 23 N -0.95 -60.56 13.96 21.45 0.30 -60.26 16 24 Si 0.95 44.52 27.47 68.60 1.88 46.40 16 25 H -0.27 -12.04 7.11 99.48 0.71 -11.33 16 26 H -0.28 -12.86 7.11 99.48 0.71 -12.15 16 27 H -0.25 -10.64 6.54 99.48 0.65 -9.99 16 28 C -0.11 -2.24 9.60 22.35 0.21 -2.03 16 29 H 0.06 0.46 7.66 -2.39 -0.02 0.44 16 30 H 0.07 0.41 7.66 -2.39 -0.02 0.39 16 31 H 0.12 0.62 8.14 -2.39 -0.02 0.60 16 32 H 0.15 1.44 6.29 -2.91 -0.02 1.42 16 33 H 0.15 1.48 6.29 -2.91 -0.02 1.46 16 34 H 0.06 0.52 7.66 -2.39 -0.02 0.50 16 35 H 0.11 0.80 8.14 -2.38 -0.02 0.78 16 36 H 0.07 0.47 7.66 -2.39 -0.02 0.45 16 37 H 0.09 1.54 8.01 -2.38 -0.02 1.52 16 38 H 0.04 0.83 7.85 -2.39 -0.02 0.81 16 39 H 0.34 7.98 8.66 -89.69 -0.78 7.21 16 40 H 0.09 1.68 8.14 -2.39 -0.02 1.66 16 41 H 0.05 0.90 8.14 -2.39 -0.02 0.88 16 42 H 0.38 9.97 9.05 -74.06 -0.67 9.30 16 43 H 0.08 2.36 7.93 -2.39 -0.02 2.34 16 44 H 0.04 1.22 8.12 -2.39 -0.02 1.20 16 45 H 0.07 2.54 6.47 -2.39 -0.02 2.52 16 46 H 0.04 2.10 6.76 -2.39 -0.02 2.08 16 47 H 0.02 0.78 8.14 -2.39 -0.02 0.77 16 48 H 0.03 1.50 6.99 -2.38 -0.02 1.48 16 49 H -0.01 -0.67 7.55 -2.39 -0.02 -0.69 16 50 H 0.27 15.80 8.31 -92.71 -0.77 15.03 16 51 H 0.14 2.69 8.04 -2.91 -0.02 2.67 16 Total: -1.00 -76.07 410.01 -3.20 -79.27 By element: Atomic # 1 Polarization: 26.61 SS G_CDS: -0.56 Total: 26.05 kcal Atomic # 6 Polarization: -18.94 SS G_CDS: 6.64 Total: -12.30 kcal Atomic # 7 Polarization: -98.52 SS G_CDS: -7.32 Total: -105.84 kcal Atomic # 8 Polarization: -29.74 SS G_CDS: -3.84 Total: -33.58 kcal Atomic # 14 Polarization: 44.52 SS G_CDS: 1.88 Total: 46.40 kcal Total: -76.07 -3.20 -79.27 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000562733773.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.692 kcal (2) G-P(sol) polarization free energy of solvation -76.066 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.758 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.199 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.265 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.957 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds