Wall clock time and date at job start Tue Mar 31 2020 21:12:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46896 * 1 3 3 C 1.46899 * 111.00088 * 2 1 4 4 C 1.46898 * 110.99992 * 123.95636 * 2 1 3 5 5 C 1.53008 * 109.47091 * 66.05166 * 4 2 1 6 6 H 1.09000 * 109.46456 * 304.99555 * 5 4 2 7 7 O 1.42897 * 109.47484 * 64.99621 * 5 4 2 8 8 C 1.53001 * 109.46824 * 185.00133 * 5 4 2 9 9 N 1.46898 * 109.46688 * 179.97438 * 8 5 4 10 10 C 1.46906 * 110.99861 * 179.97438 * 9 8 5 11 11 C 1.52994 * 109.46996 * 179.97438 * 10 9 8 12 12 H 1.09003 * 109.46960 * 60.00222 * 11 10 9 13 13 O 1.42895 * 109.47770 * 299.99977 * 11 10 9 14 14 C 1.53005 * 109.47159 * 179.97438 * 11 10 9 15 15 O 1.42897 * 109.47198 * 185.00313 * 14 11 10 16 16 C 1.35683 * 116.99685 * 180.02562 * 15 14 11 17 17 C 1.39305 * 119.81261 * 180.02562 * 16 15 14 18 18 C 1.36441 * 120.18225 * 179.72110 * 17 16 15 19 19 C 1.40834 * 119.80994 * 0.26831 * 18 17 16 20 20 C 1.41215 * 120.17646 * 180.02562 * 19 18 17 21 21 H 1.08006 * 120.00196 * 204.54801 * 20 19 18 22 22 C 1.39888 * 120.00093 * 24.55741 * 20 19 18 23 23 N 1.30881 * 120.00110 * 17.92429 * 22 20 19 24 24 Si 1.86803 * 119.99833 * 197.92928 * 22 20 19 25 25 H 1.48503 * 109.47208 * 59.99802 * 24 22 20 26 26 H 1.48511 * 109.47031 * 179.97438 * 24 22 20 27 27 H 1.48503 * 109.47221 * 299.99522 * 24 22 20 28 28 C 1.40829 * 119.64178 * 0.02562 * 19 18 17 29 29 C 1.36431 * 119.81319 * 359.97438 * 28 19 18 30 30 H 1.08994 * 109.47251 * 296.04160 * 1 2 3 31 31 H 1.09004 * 109.47424 * 56.04713 * 1 2 3 32 32 H 1.09010 * 109.46936 * 176.03922 * 1 2 3 33 33 H 1.08995 * 109.47391 * 183.94879 * 3 2 1 34 34 H 1.08992 * 109.47282 * 303.95957 * 3 2 1 35 35 H 1.09009 * 109.46817 * 63.95622 * 3 2 1 36 36 H 1.08997 * 109.47488 * 306.04899 * 4 2 1 37 37 H 1.09000 * 109.46936 * 186.04451 * 4 2 1 38 38 H 0.96696 * 113.99803 * 59.99968 * 7 5 4 39 39 H 1.09001 * 109.47251 * 59.99347 * 8 5 4 40 40 H 1.09001 * 109.46718 * 299.99343 * 8 5 4 41 41 H 1.00898 * 111.00380 * 56.04488 * 9 8 5 42 42 H 1.09003 * 109.47085 * 59.99862 * 10 9 8 43 43 H 1.08999 * 109.47089 * 299.99746 * 10 9 8 44 44 H 0.96703 * 113.99988 * 300.00629 * 13 11 10 45 45 H 1.09005 * 109.46782 * 65.00294 * 14 11 10 46 46 H 1.09002 * 109.47300 * 305.00838 * 14 11 10 47 47 H 1.08000 * 119.91135 * 359.97438 * 17 16 15 48 48 H 1.07999 * 120.09455 * 180.29138 * 18 17 16 49 49 H 0.97005 * 119.99879 * 180.02562 * 23 22 20 50 50 H 1.07999 * 120.09144 * 180.02562 * 28 19 18 51 51 H 1.08003 * 119.90891 * 180.02562 * 29 28 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.9954 -0.7660 1.1375 5 6 1.6315 -2.2427 0.9701 6 1 0.5532 -2.3390 0.8431 7 8 2.2956 -2.7696 -0.1802 8 6 2.0700 -3.0200 2.2129 9 7 1.7201 -4.4377 2.0524 10 6 2.1276 -5.2170 3.2292 11 6 1.7468 -6.6847 3.0256 12 1 2.2521 -7.0718 2.1408 13 8 0.3325 -6.7903 2.8510 14 6 2.1718 -7.4965 4.2510 15 8 1.9226 -8.8834 4.0134 16 6 2.2454 -9.7466 5.0092 17 6 2.0276 -11.1121 4.8398 18 6 2.3547 -11.9874 5.8340 19 6 2.9087 -11.5063 7.0361 20 6 3.2506 -12.4054 8.0700 21 1 3.2920 -12.0616 9.0930 22 6 3.5358 -13.7415 7.7692 23 7 3.8315 -14.0872 6.5420 24 14 3.4945 -15.0321 9.1190 25 1 2.1355 -15.0810 9.7158 26 1 3.8305 -16.3599 8.5448 27 1 4.4841 -14.6818 10.1693 28 6 3.1198 -10.1238 7.2015 29 6 2.7873 -9.2620 6.1976 30 1 -0.3633 0.4511 0.9233 31 1 -0.3634 0.5740 -0.8525 32 1 -0.3633 -1.0253 -0.0710 33 1 3.0827 1.3432 -0.0708 34 1 1.5898 1.9163 -0.8523 35 1 1.7044 1.8723 0.9234 36 1 1.5611 -0.3874 2.0628 37 1 3.0797 -0.6611 1.1755 38 1 3.2601 -2.7167 -0.1362 39 1 1.5634 -2.6181 3.0904 40 1 3.1483 -2.9237 2.3399 41 1 2.1253 -4.8170 1.2099 42 1 1.6220 -4.8301 4.1140 43 1 3.2063 -5.1362 3.3626 44 1 -0.1820 -6.4635 3.6017 45 1 1.6012 -7.1684 5.1199 46 1 3.2352 -7.3449 4.4363 47 1 1.6024 -11.4793 3.9174 48 1 2.1896 -13.0462 5.6993 49 1 4.0289 -15.0138 6.3333 50 1 3.5446 -9.7470 8.1202 51 1 2.9489 -8.2014 6.3226 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000563958288.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:12:27 Heat of formation + Delta-G solvation = -112.591592 kcal Electronic energy + Delta-G solvation = -28148.235352 eV Core-core repulsion = 24047.702234 eV Total energy + Delta-G solvation = -4100.533118 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.204 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -39.31569 -38.95819 -37.72502 -36.66906 -36.05181 -34.79926 -33.31490 -31.29865 -30.14484 -29.41767 -28.92341 -28.06452 -26.70513 -24.92896 -24.12174 -22.44364 -22.06301 -21.42227 -20.67287 -20.55684 -17.42132 -17.35853 -17.00219 -16.79462 -16.45620 -16.12737 -15.81685 -15.36633 -15.27890 -15.17876 -14.88506 -14.58804 -14.18063 -14.02572 -13.92252 -13.49512 -13.18688 -12.90768 -12.82515 -12.66029 -12.31754 -12.24377 -12.17811 -12.13579 -12.13127 -11.96836 -11.76132 -11.38360 -11.19374 -11.12414 -10.97084 -10.80048 -10.63318 -10.39616 -9.99240 -9.84391 -9.83616 -9.33260 -9.01786 -8.80814 -8.71085 -7.64444 -7.03296 -6.72265 -4.25726 2.79030 2.94932 3.07968 3.10254 3.21869 3.22405 3.61816 3.95007 4.09701 4.13749 4.40630 4.53926 4.60668 4.62145 4.63907 4.75536 4.87365 4.88032 4.90462 4.99339 5.03231 5.14352 5.17945 5.19168 5.26100 5.28303 5.38247 5.42592 5.48503 5.61362 5.67136 5.70846 6.02175 6.05267 6.22803 6.45699 6.51356 6.62626 6.73455 6.97480 7.07194 7.11081 7.18433 7.35505 7.46398 7.55596 7.77419 7.79228 8.00251 8.20483 8.45286 8.65196 8.89740 8.98692 10.22146 Molecular weight = 338.20amu Principal moments of inertia in cm(-1) A = 0.043981 B = 0.001411 C = 0.001396 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 636.485424 B =19843.122854 C =20050.847586 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 N -0.538 5.538 3 C 0.024 3.976 4 C 0.022 3.978 5 C 0.113 3.887 6 H 0.108 0.892 7 O -0.545 6.545 8 C 0.027 3.973 9 N -0.672 5.672 10 C 0.030 3.970 11 C 0.115 3.885 12 H 0.103 0.897 13 O -0.539 6.539 14 C 0.039 3.961 15 O -0.317 6.317 16 C -0.009 4.009 17 C -0.119 4.119 18 C -0.133 4.133 19 C 0.088 3.912 20 C -0.465 4.465 21 H 0.076 0.924 22 C 0.076 3.924 23 N -0.798 5.798 24 Si 0.907 3.093 25 H -0.264 1.264 26 H -0.279 1.279 27 H -0.266 1.266 28 C -0.199 4.199 29 C -0.168 4.168 30 H 0.025 0.975 31 H 0.069 0.931 32 H 0.074 0.926 33 H 0.067 0.933 34 H 0.069 0.931 35 H 0.024 0.976 36 H 0.043 0.957 37 H 0.077 0.923 38 H 0.369 0.631 39 H 0.079 0.921 40 H 0.031 0.969 41 H 0.351 0.649 42 H 0.077 0.923 43 H 0.041 0.959 44 H 0.370 0.630 45 H 0.053 0.947 46 H 0.056 0.944 47 H 0.098 0.902 48 H 0.126 0.874 49 H 0.281 0.719 50 H 0.094 0.906 51 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.355 25.207 -9.126 26.911 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 N -0.261 5.261 3 C -0.125 4.125 4 C -0.107 4.107 5 C 0.053 3.947 6 H 0.126 0.874 7 O -0.348 6.348 8 C -0.103 4.103 9 N -0.305 5.305 10 C -0.100 4.100 11 C 0.055 3.945 12 H 0.121 0.879 13 O -0.343 6.343 14 C -0.039 4.039 15 O -0.232 6.232 16 C -0.053 4.053 17 C -0.137 4.137 18 C -0.152 4.152 19 C 0.086 3.914 20 C -0.495 4.495 21 H 0.094 0.906 22 C -0.141 4.141 23 N -0.425 5.425 24 Si 0.732 3.268 25 H -0.189 1.189 26 H -0.204 1.204 27 H -0.191 1.191 28 C -0.219 4.219 29 C -0.187 4.187 30 H 0.043 0.957 31 H 0.088 0.912 32 H 0.093 0.907 33 H 0.086 0.914 34 H 0.088 0.912 35 H 0.042 0.958 36 H 0.061 0.939 37 H 0.095 0.905 38 H 0.215 0.785 39 H 0.097 0.903 40 H 0.050 0.950 41 H 0.171 0.829 42 H 0.095 0.905 43 H 0.059 0.941 44 H 0.217 0.783 45 H 0.071 0.929 46 H 0.074 0.926 47 H 0.116 0.884 48 H 0.143 0.857 49 H 0.092 0.908 50 H 0.112 0.888 51 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -3.276 24.444 -10.433 26.779 hybrid contribution 1.455 0.380 2.358 2.797 sum -1.820 24.825 -8.075 26.168 Atomic orbital electron populations 1.22479 0.87098 1.02848 1.00446 1.61886 1.08238 1.13460 1.42545 1.22404 1.00774 0.88756 1.00528 1.22860 1.00671 0.95014 0.92140 1.21981 0.98760 0.89299 0.84657 0.87394 1.86667 1.22983 1.83996 1.41201 1.22642 0.98471 0.90104 0.99123 1.60209 1.64283 1.00993 1.05012 1.22581 0.98765 0.94200 0.94417 1.21830 0.83186 0.91332 0.98169 0.87891 1.86641 1.15782 1.86504 1.45329 1.23102 1.00181 0.83057 0.97522 1.85893 1.82278 1.14500 1.40550 1.18628 1.08636 0.89337 0.88661 1.19848 1.04434 0.89898 0.99560 1.20984 1.01089 0.99040 0.94117 1.17592 0.89737 0.91197 0.92906 1.19428 1.41850 0.93275 0.94911 0.90612 1.25871 0.92350 0.99641 0.96276 1.69827 1.32823 1.19621 1.20189 0.86387 0.79830 0.79155 0.81430 1.18875 1.20367 1.19118 1.20547 1.08686 0.93967 0.98694 1.20383 1.05776 0.97703 0.94855 0.95682 0.91239 0.90697 0.91393 0.91189 0.95773 0.93856 0.90467 0.78516 0.90294 0.95044 0.82926 0.90484 0.94121 0.78308 0.92930 0.92614 0.88401 0.85654 0.90846 0.88808 0.89014 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.12 9.33 60.06 0.56 0.68 16 2 N -0.54 -3.80 4.97 -251.26 -1.25 -5.05 16 3 C 0.02 0.13 9.57 60.06 0.57 0.70 16 4 C 0.02 0.13 4.60 -3.82 -0.02 0.12 16 5 C 0.11 0.80 3.19 -26.73 -0.09 0.71 16 6 H 0.11 0.92 6.34 -51.93 -0.33 0.59 16 7 O -0.54 -4.51 12.62 -35.23 -0.44 -4.95 16 8 C 0.03 0.19 5.39 -3.82 -0.02 0.17 16 9 N -0.67 -6.13 6.37 -113.78 -0.72 -6.86 16 10 C 0.03 0.28 5.35 -3.82 -0.02 0.26 16 11 C 0.11 1.44 3.45 -26.73 -0.09 1.35 16 12 H 0.10 1.37 8.14 -51.93 -0.42 0.94 16 13 O -0.54 -7.51 13.17 -40.06 -0.53 -8.04 16 14 C 0.04 0.59 4.37 37.16 0.16 0.75 16 15 O -0.32 -6.54 10.09 -23.58 -0.24 -6.78 16 16 C -0.01 -0.22 6.71 -38.79 -0.26 -0.48 16 17 C -0.12 -2.92 9.92 -39.83 -0.40 -3.31 16 18 C -0.13 -3.50 8.64 -39.25 -0.34 -3.84 16 19 C 0.09 2.36 5.57 -106.81 -0.60 1.77 16 20 C -0.46 -12.36 9.04 -37.83 -0.34 -12.71 16 21 H 0.08 1.93 7.91 -52.48 -0.41 1.51 16 22 C 0.08 1.90 5.13 -17.34 -0.09 1.81 16 23 N -0.80 -20.75 10.96 55.54 0.61 -20.14 16 24 Si 0.91 18.70 29.60 -169.99 -5.03 13.67 16 25 H -0.26 -5.40 7.11 56.52 0.40 -5.00 16 26 H -0.28 -5.59 7.11 56.52 0.40 -5.19 16 27 H -0.27 -5.41 7.11 56.52 0.40 -5.01 16 28 C -0.20 -4.90 9.74 -39.25 -0.38 -5.28 16 29 C -0.17 -3.80 8.96 -39.83 -0.36 -4.16 16 30 H 0.02 0.15 8.14 -51.93 -0.42 -0.28 16 31 H 0.07 0.40 8.12 -51.93 -0.42 -0.02 16 32 H 0.07 0.52 6.37 -51.92 -0.33 0.19 16 33 H 0.07 0.33 8.12 -51.93 -0.42 -0.09 16 34 H 0.07 0.35 8.12 -51.93 -0.42 -0.08 16 35 H 0.02 0.12 8.14 -51.92 -0.42 -0.30 16 36 H 0.04 0.25 8.12 -51.93 -0.42 -0.18 16 37 H 0.08 0.40 8.06 -51.93 -0.42 -0.02 16 38 H 0.37 1.89 9.04 45.56 0.41 2.30 16 39 H 0.08 0.53 8.14 -51.93 -0.42 0.10 16 40 H 0.03 0.19 8.14 -51.93 -0.42 -0.23 16 41 H 0.35 3.36 8.12 -39.29 -0.32 3.04 16 42 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 43 H 0.04 0.35 8.14 -51.93 -0.42 -0.07 16 44 H 0.37 3.99 9.05 45.56 0.41 4.40 16 45 H 0.05 0.75 7.63 -51.93 -0.40 0.36 16 46 H 0.06 0.81 7.66 -51.93 -0.40 0.41 16 47 H 0.10 2.24 8.06 -52.49 -0.42 1.82 16 48 H 0.13 3.37 6.16 -52.49 -0.32 3.05 16 49 H 0.28 6.65 8.30 -40.82 -0.34 6.32 16 50 H 0.09 2.15 8.06 -52.49 -0.42 1.73 16 51 H 0.09 1.77 6.27 -52.48 -0.33 1.44 16 LS Contribution 414.57 15.07 6.25 6.25 Total: -1.00 -31.24 414.57 -10.12 -41.36 By element: Atomic # 1 Polarization: 19.06 SS G_CDS: -7.06 Total: 12.00 kcal Atomic # 6 Polarization: -19.76 SS G_CDS: -1.70 Total: -21.46 kcal Atomic # 7 Polarization: -30.68 SS G_CDS: -1.36 Total: -32.05 kcal Atomic # 8 Polarization: -18.56 SS G_CDS: -1.21 Total: -19.77 kcal Atomic # 14 Polarization: 18.70 SS G_CDS: -5.03 Total: 13.67 kcal Total LS contribution 6.25 Total: 6.25 kcal Total: -31.24 -10.12 -41.36 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000563958288.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -71.235 kcal (2) G-P(sol) polarization free energy of solvation -31.239 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.474 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.118 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.357 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.592 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.19 seconds