Wall clock time and date at job start Tue Mar 31 2020 21:17:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42909 * 1 3 3 C 1.36002 * 116.99611 * 2 1 4 4 C 1.38568 * 120.07294 * 359.97438 * 3 2 1 5 5 C 1.38239 * 119.99657 * 180.02562 * 4 3 2 6 6 C 1.38253 * 120.14873 * 0.02562 * 5 4 3 7 7 C 1.38251 * 120.14478 * 359.95601 * 6 5 4 8 8 C 1.50702 * 119.99748 * 180.02562 * 7 6 5 9 9 N 1.46900 * 109.46790 * 260.00021 * 8 7 6 10 10 C 1.46903 * 111.00131 * 180.02562 * 9 8 7 11 11 C 1.52998 * 109.47302 * 180.02562 * 10 9 8 12 12 H 1.08992 * 109.47135 * 59.99463 * 11 10 9 13 13 O 1.42897 * 109.46674 * 299.99470 * 11 10 9 14 14 C 1.53004 * 109.46799 * 179.97438 * 11 10 9 15 15 N 1.46898 * 109.46619 * 184.99872 * 14 11 10 16 16 C 1.46901 * 111.00443 * 66.04574 * 15 14 11 17 17 C 1.46906 * 110.99820 * 189.99887 * 15 14 11 18 18 C 1.50696 * 109.47351 * 169.99890 * 17 15 14 19 19 H 1.08007 * 119.99780 * 0.02562 * 18 17 15 20 20 C 1.37878 * 120.00506 * 180.02562 * 18 17 15 21 21 N 1.31515 * 119.99253 * 359.97438 * 20 18 17 22 22 Si 1.86795 * 120.00341 * 180.02562 * 20 18 17 23 23 H 1.48502 * 109.47279 * 359.97438 * 22 20 18 24 24 H 1.48497 * 109.47075 * 119.99817 * 22 20 18 25 25 H 1.48496 * 109.46942 * 240.00005 * 22 20 18 26 26 C 1.38556 * 119.99873 * 0.27413 * 7 6 5 27 27 O 1.35996 * 120.07510 * 179.74755 * 26 7 6 28 28 C 1.42893 * 117.00268 * 89.99881 * 27 26 7 29 29 H 1.09000 * 109.46792 * 179.97438 * 1 2 3 30 30 H 1.08993 * 109.46997 * 300.00124 * 1 2 3 31 31 H 1.09000 * 109.46709 * 60.00307 * 1 2 3 32 32 H 1.07998 * 119.99910 * 0.02826 * 4 3 2 33 33 H 1.07998 * 119.92674 * 180.02562 * 5 4 3 34 34 H 1.08000 * 119.93192 * 179.97438 * 6 5 4 35 35 H 1.09000 * 109.46904 * 140.00162 * 8 7 6 36 36 H 1.08998 * 109.47520 * 19.99719 * 8 7 6 37 37 H 1.00901 * 111.00381 * 303.95622 * 9 8 7 38 38 H 1.08996 * 109.47237 * 59.99345 * 10 9 8 39 39 H 1.09009 * 109.46499 * 299.99967 * 10 9 8 40 40 H 0.96701 * 114.00549 * 300.00026 * 13 11 10 41 41 H 1.08994 * 109.47270 * 64.99737 * 14 11 10 42 42 H 1.08999 * 109.47017 * 304.99614 * 14 11 10 43 43 H 1.09002 * 109.47401 * 183.95136 * 16 15 14 44 44 H 1.09001 * 109.46874 * 63.95149 * 16 15 14 45 45 H 1.09004 * 109.46970 * 303.95282 * 16 15 14 46 46 H 1.08997 * 109.46995 * 289.99871 * 17 15 14 47 47 H 1.09001 * 109.46848 * 49.99877 * 17 15 14 48 48 H 0.96999 * 119.99606 * 179.97438 * 21 20 18 49 49 H 1.08999 * 109.47124 * 60.00081 * 28 27 26 50 50 H 1.08993 * 109.47688 * 180.02562 * 28 27 26 51 51 H 1.09001 * 109.47376 * 300.00963 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0464 1.2118 0.0000 4 6 1.2932 2.3749 -0.0005 5 6 1.9223 3.6058 -0.0011 6 6 3.3028 3.6800 -0.0016 7 6 4.0603 2.5234 -0.0007 8 6 5.5649 2.6082 -0.0007 9 7 6.0673 2.3945 -1.3645 10 6 7.5339 2.4697 -1.4031 11 6 8.0186 2.2434 -2.8365 12 1 7.5983 3.0098 -3.4875 13 8 7.5959 0.9539 -3.2842 14 6 9.5461 2.3223 -2.8767 15 7 10.0049 2.2246 -4.2688 16 6 9.5740 3.3927 -5.0484 17 6 11.4631 2.0583 -4.3320 18 6 11.8692 1.7175 -5.7426 19 1 11.1190 1.6332 -6.5151 20 6 13.1983 1.5132 -6.0473 21 7 14.1117 1.6163 -5.1067 22 14 13.7017 1.0914 -7.7960 23 1 12.4944 1.0361 -8.6589 24 1 14.6297 2.1313 -8.3084 25 1 14.3810 -0.2290 -7.8107 26 6 3.4360 1.2865 -0.0050 27 8 4.1796 0.1478 -0.0093 28 6 4.5346 -0.4000 1.2618 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 0.2146 2.3196 -0.0005 33 1 1.3341 4.5115 -0.0011 34 1 3.7907 4.6435 -0.0024 35 1 5.9719 1.8431 0.6605 36 1 5.8734 3.5930 0.3500 37 1 5.7407 1.5154 -1.7367 38 1 7.9542 1.7035 -0.7517 39 1 7.8563 3.4535 -1.0619 40 1 7.9332 0.2218 -2.7500 41 1 9.9677 1.5014 -2.2967 42 1 9.8721 3.2719 -2.4525 43 1 9.8660 3.2619 -6.0904 44 1 10.0457 4.2903 -4.6488 45 1 8.4904 3.4925 -4.9845 46 1 11.9481 2.9861 -4.0285 47 1 11.7664 1.2537 -3.6621 48 1 15.0467 1.4722 -5.3209 49 1 3.6295 -0.6434 1.8182 50 1 5.1258 -1.3039 1.1157 51 1 5.1197 0.3299 1.8214 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000564183634.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:17:27 Heat of formation + Delta-G solvation = -87.858177 kcal Electronic energy + Delta-G solvation = -29293.384796 eV Core-core repulsion = 25193.924199 eV Total energy + Delta-G solvation = -4099.460597 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.204 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -40.90112 -38.73122 -38.16223 -37.30913 -35.90745 -34.85761 -32.48836 -31.55392 -30.41578 -29.43799 -27.77778 -27.37429 -26.97828 -26.18188 -24.70304 -23.06188 -22.60595 -21.51765 -21.12077 -20.10301 -18.46791 -17.55599 -17.10852 -16.55012 -16.33427 -16.14273 -15.90381 -15.50082 -15.24244 -15.02684 -14.90977 -14.75222 -14.54359 -14.21287 -14.07189 -13.72942 -13.46389 -13.23138 -12.78850 -12.66100 -12.44293 -12.34604 -12.12357 -11.99671 -11.85166 -11.79212 -11.43251 -11.27611 -11.25898 -11.04525 -10.84678 -10.70481 -10.62144 -10.23186 -10.21787 -9.95722 -9.56744 -9.14083 -9.02533 -8.45532 -8.43127 -8.40123 -7.13486 -5.99184 -3.99678 0.81058 1.04202 2.84665 3.14786 3.34311 3.41422 3.47625 3.57717 4.14334 4.41814 4.47675 4.49153 4.66580 4.74154 4.77942 4.82922 4.89878 4.93815 5.00480 5.04701 5.08687 5.10482 5.19033 5.27179 5.32637 5.33820 5.37232 5.43865 5.54407 5.60631 5.73600 5.80154 5.86055 6.02175 6.11330 6.20765 6.25747 6.29388 6.39356 6.49650 6.78292 6.83710 6.90085 7.31637 7.34143 7.37293 7.38619 7.85319 8.04593 8.15634 8.26097 8.60617 9.08910 9.64432 11.11894 Molecular weight = 338.20amu Principal moments of inertia in cm(-1) A = 0.022396 B = 0.001837 C = 0.001809 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1249.896644 B =15238.793735 C =15477.438083 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.307 6.307 3 C 0.109 3.891 4 C -0.200 4.200 5 C -0.085 4.085 6 C -0.125 4.125 7 C -0.059 4.059 8 C 0.103 3.897 9 N -0.676 5.676 10 C 0.028 3.972 11 C 0.114 3.886 12 H 0.104 0.896 13 O -0.545 6.545 14 C 0.026 3.974 15 N -0.530 5.530 16 C 0.037 3.963 17 C 0.192 3.808 18 C -0.503 4.503 19 H 0.065 0.935 20 C 0.052 3.948 21 N -0.901 5.901 22 Si 0.898 3.102 23 H -0.271 1.271 24 H -0.285 1.285 25 H -0.284 1.284 26 C 0.070 3.930 27 O -0.321 6.321 28 C 0.035 3.965 29 H 0.100 0.900 30 H 0.054 0.946 31 H 0.056 0.944 32 H 0.131 0.869 33 H 0.128 0.872 34 H 0.131 0.869 35 H 0.039 0.961 36 H 0.081 0.919 37 H 0.356 0.644 38 H 0.032 0.968 39 H 0.077 0.923 40 H 0.366 0.634 41 H 0.068 0.932 42 H 0.028 0.972 43 H 0.073 0.927 44 H 0.009 0.991 45 H 0.048 0.952 46 H -0.011 1.011 47 H 0.028 0.972 48 H 0.260 0.740 49 H 0.045 0.955 50 H 0.094 0.906 51 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.656 1.438 17.681 32.856 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.220 6.220 3 C 0.063 3.937 4 C -0.219 4.219 5 C -0.103 4.103 6 C -0.144 4.144 7 C -0.060 4.060 8 C -0.026 4.026 9 N -0.309 5.309 10 C -0.102 4.102 11 C 0.054 3.946 12 H 0.122 0.878 13 O -0.348 6.348 14 C -0.104 4.104 15 N -0.254 5.254 16 C -0.112 4.112 17 C 0.067 3.933 18 C -0.542 4.542 19 H 0.083 0.917 20 C -0.148 4.148 21 N -0.541 5.541 22 Si 0.726 3.274 23 H -0.196 1.196 24 H -0.212 1.212 25 H -0.210 1.210 26 C 0.025 3.975 27 O -0.238 6.238 28 C -0.060 4.060 29 H 0.119 0.881 30 H 0.072 0.928 31 H 0.075 0.925 32 H 0.149 0.851 33 H 0.146 0.854 34 H 0.149 0.851 35 H 0.057 0.943 36 H 0.099 0.901 37 H 0.176 0.824 38 H 0.050 0.950 39 H 0.096 0.904 40 H 0.212 0.788 41 H 0.087 0.913 42 H 0.046 0.954 43 H 0.091 0.909 44 H 0.027 0.973 45 H 0.066 0.934 46 H 0.007 0.993 47 H 0.046 0.954 48 H 0.069 0.931 49 H 0.064 0.936 50 H 0.113 0.887 51 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -27.899 1.707 16.695 32.558 hybrid contribution 1.028 -0.379 0.644 1.271 sum -26.871 1.329 17.340 32.008 Atomic orbital electron populations 1.23091 0.78520 1.04071 1.01283 1.86175 1.21151 1.26205 1.88508 1.19410 0.91567 0.84945 0.97747 1.21161 1.00046 0.91982 1.08744 1.20970 0.94579 0.97041 0.97701 1.20903 0.93414 0.97853 1.02264 1.19952 0.96093 0.91502 0.98420 1.20768 0.89297 1.01472 0.91057 1.60453 1.09038 1.42251 1.19176 1.22698 0.87801 1.01474 0.98249 1.21991 0.93175 0.86575 0.92836 0.87844 1.86622 1.74951 1.14869 1.58368 1.22705 0.94779 1.00076 0.92855 1.62023 1.16831 1.38902 1.07663 1.22254 0.98176 0.90725 1.00033 1.19751 0.80052 0.95540 0.97936 1.21225 0.92066 1.46410 0.94468 0.91719 1.25005 0.96575 0.95742 0.97500 1.69974 1.01026 1.50563 1.32531 0.86429 0.78497 0.77864 0.84579 1.19597 1.21175 1.21050 1.17831 0.86308 0.86428 1.06943 1.86132 1.70167 1.38506 1.28962 1.22987 0.99685 0.98516 0.84768 0.88133 0.92768 0.92513 0.85127 0.85365 0.85145 0.94337 0.90081 0.82362 0.95010 0.90413 0.78786 0.91336 0.95377 0.90852 0.97251 0.93354 0.99311 0.95421 0.93066 0.93592 0.88740 0.93868 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.14 9.81 101.05 0.99 1.14 16 2 O -0.31 -3.12 10.28 -34.25 -0.35 -3.48 16 3 C 0.11 1.15 6.70 -39.12 -0.26 0.89 16 4 C -0.20 -1.68 9.04 -39.46 -0.36 -2.03 16 5 C -0.08 -0.67 10.04 -39.58 -0.40 -1.07 16 6 C -0.13 -1.13 9.66 -39.57 -0.38 -1.51 16 7 C -0.06 -0.61 5.40 -104.50 -0.56 -1.18 16 8 C 0.10 1.05 5.47 -4.97 -0.03 1.02 16 9 N -0.68 -8.23 6.49 -115.05 -0.75 -8.97 16 10 C 0.03 0.34 5.39 -3.82 -0.02 0.32 16 11 C 0.11 1.73 3.20 -26.73 -0.09 1.64 16 12 H 0.10 1.70 6.26 -51.93 -0.33 1.37 16 13 O -0.54 -8.85 12.62 -35.23 -0.44 -9.29 16 14 C 0.03 0.46 4.60 -3.82 -0.02 0.44 16 15 N -0.53 -11.84 4.70 -244.37 -1.15 -12.99 16 16 C 0.04 0.75 9.17 60.07 0.55 1.30 16 17 C 0.19 5.14 4.72 -4.97 -0.02 5.12 16 18 C -0.50 -14.54 8.52 -34.44 -0.29 -14.83 16 19 H 0.06 1.87 7.10 -52.48 -0.37 1.50 16 20 C 0.05 1.52 5.46 -17.82 -0.10 1.43 16 21 N -0.90 -27.21 13.29 55.43 0.74 -26.47 16 22 Si 0.90 22.14 29.54 -169.99 -5.02 17.11 16 23 H -0.27 -6.59 7.11 56.52 0.40 -6.19 16 24 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 25 H -0.28 -6.94 7.11 56.52 0.40 -6.53 16 26 C 0.07 0.80 5.70 -39.12 -0.22 0.57 16 27 O -0.32 -3.79 9.44 -34.23 -0.32 -4.11 16 28 C 0.03 0.30 10.85 101.05 1.10 1.40 16 29 H 0.10 0.40 8.14 -51.93 -0.42 -0.03 16 30 H 0.05 0.23 7.66 -51.93 -0.40 -0.17 16 31 H 0.06 0.28 7.66 -51.93 -0.40 -0.12 16 32 H 0.13 0.77 6.30 -52.49 -0.33 0.44 16 33 H 0.13 0.68 8.06 -52.49 -0.42 0.26 16 34 H 0.13 0.97 8.03 -52.49 -0.42 0.55 16 35 H 0.04 0.38 6.57 -51.93 -0.34 0.04 16 36 H 0.08 0.74 8.00 -51.93 -0.42 0.32 16 37 H 0.36 4.81 8.02 -39.29 -0.32 4.49 16 38 H 0.03 0.36 8.14 -51.93 -0.42 -0.06 16 39 H 0.08 0.90 8.14 -51.92 -0.42 0.47 16 40 H 0.37 4.89 9.05 45.56 0.41 5.30 16 41 H 0.07 1.20 7.93 -51.93 -0.41 0.79 16 42 H 0.03 0.49 8.12 -51.93 -0.42 0.07 16 43 H 0.07 1.61 6.86 -51.93 -0.36 1.25 16 44 H 0.01 0.18 8.14 -51.93 -0.42 -0.24 16 45 H 0.05 0.87 6.21 -51.93 -0.32 0.55 16 46 H -0.01 -0.31 8.12 -51.93 -0.42 -0.73 16 47 H 0.03 0.78 7.93 -51.93 -0.41 0.37 16 48 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 49 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 50 H 0.09 0.68 8.14 -51.93 -0.42 0.25 16 51 H 0.04 0.33 7.12 -51.93 -0.37 -0.04 16 LS Contribution 413.57 15.07 6.23 6.23 Total: -1.00 -34.04 413.57 -8.90 -42.93 By element: Atomic # 1 Polarization: 12.10 SS G_CDS: -7.71 Total: 4.39 kcal Atomic # 6 Polarization: -5.24 SS G_CDS: -0.11 Total: -5.35 kcal Atomic # 7 Polarization: -47.27 SS G_CDS: -1.16 Total: -48.43 kcal Atomic # 8 Polarization: -15.76 SS G_CDS: -1.12 Total: -16.88 kcal Atomic # 14 Polarization: 22.14 SS G_CDS: -5.02 Total: 17.11 kcal Total LS contribution 6.23 Total: 6.23 kcal Total: -34.04 -8.90 -42.93 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000564183634.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.925 kcal (2) G-P(sol) polarization free energy of solvation -34.037 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.963 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.896 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.933 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.858 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds