Wall clock time and date at job start Tue Mar 31 2020 21:03:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 O 1.21279 * 120.00267 * 2 1 4 4 N 1.34780 * 119.99821 * 180.02562 * 2 1 3 5 5 C 1.46919 * 120.62899 * 354.62379 * 4 2 1 6 6 C 1.53191 * 108.77812 * 233.58845 * 5 4 2 7 7 C 1.53045 * 109.31370 * 305.36778 * 6 5 4 8 8 C 1.53044 * 109.53343 * 61.36059 * 7 6 5 9 9 O 1.42903 * 109.52578 * 58.60990 * 8 7 6 10 10 C 1.50701 * 109.49382 * 178.68604 * 8 7 6 11 11 O 1.21279 * 120.00236 * 11.57814 * 10 8 7 12 12 N 1.34783 * 119.99977 * 191.58582 * 10 8 7 13 13 C 1.46919 * 120.62911 * 353.73114 * 12 10 8 14 14 C 1.53189 * 108.77800 * 233.88690 * 13 12 10 15 15 C 1.53043 * 109.31346 * 305.36357 * 14 13 12 16 16 C 1.52995 * 109.46128 * 181.38315 * 15 14 13 17 17 C 1.50702 * 109.46788 * 64.93771 * 16 15 14 18 18 H 1.07996 * 120.00379 * 359.97438 * 17 16 15 19 19 C 1.37880 * 119.99651 * 179.97438 * 17 16 15 20 20 N 1.31517 * 120.00228 * 359.97438 * 19 17 16 21 21 Si 1.86793 * 119.99922 * 179.97438 * 19 17 16 22 22 H 1.48503 * 109.47451 * 59.99981 * 21 19 17 23 23 H 1.48500 * 109.47252 * 179.97438 * 21 19 17 24 24 H 1.48507 * 109.47043 * 300.00001 * 21 19 17 25 25 C 1.53051 * 109.53444 * 61.36316 * 15 14 13 26 26 C 1.46923 * 120.62950 * 174.01315 * 12 10 8 27 27 C 1.46920 * 120.62990 * 174.60709 * 4 2 1 28 28 H 1.08995 * 109.47094 * 184.61063 * 1 2 3 29 29 H 1.09000 * 109.47047 * 304.61651 * 1 2 3 30 30 H 1.09004 * 109.46937 * 64.61473 * 1 2 3 31 31 H 1.08996 * 109.59128 * 353.37587 * 5 4 2 32 32 H 1.08999 * 109.58964 * 113.80229 * 5 4 2 33 33 H 1.09006 * 109.49782 * 65.31823 * 6 5 4 34 34 H 1.09001 * 109.49988 * 185.38293 * 6 5 4 35 35 H 1.08996 * 109.45829 * 301.34921 * 7 6 5 36 36 H 1.08997 * 109.46058 * 181.37917 * 7 6 5 37 37 H 0.96693 * 114.00028 * 187.59905 * 9 8 7 38 38 H 1.09004 * 109.59020 * 353.67898 * 13 12 10 39 39 H 1.09003 * 109.58504 * 114.09802 * 13 12 10 40 40 H 1.09005 * 109.49741 * 185.41799 * 14 13 12 41 41 H 1.08998 * 109.49944 * 65.31932 * 14 13 12 42 42 H 1.09005 * 109.44766 * 301.35645 * 15 14 13 43 43 H 1.09004 * 109.46896 * 184.93562 * 16 15 14 44 44 H 1.08996 * 109.47062 * 304.93401 * 16 15 14 45 45 H 0.96998 * 120.00073 * 180.02562 * 20 19 17 46 46 H 1.08996 * 109.49493 * 178.68494 * 25 15 14 47 47 H 1.09000 * 109.49260 * 58.58796 * 25 15 14 48 48 H 1.08995 * 109.58839 * 245.90249 * 26 12 10 49 49 H 1.08998 * 109.59065 * 6.33226 * 26 12 10 50 50 H 1.09004 * 109.58864 * 6.62242 * 27 4 2 51 51 H 1.09002 * 109.70091 * 246.26841 * 27 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1135 1.0503 0.0000 4 7 2.1809 -1.1672 -0.0005 5 6 1.4651 -2.4448 0.1174 6 6 2.0681 -3.2427 1.2778 7 6 3.5769 -3.3849 1.0641 8 6 4.2238 -1.9981 1.0437 9 8 3.9528 -1.3265 2.2756 10 6 5.7134 -2.1406 0.8656 11 8 6.1873 -3.2132 0.5562 12 7 6.5191 -1.0760 1.0503 13 6 5.9531 0.2584 1.2903 14 6 6.5457 1.2361 0.2707 15 6 8.0733 1.1790 0.3434 16 6 8.6686 2.1794 -0.6495 17 6 8.3002 3.5801 -0.2331 18 1 7.7011 3.7407 0.6510 19 6 8.7281 4.6566 -0.9809 20 7 9.4581 4.4610 -2.0572 21 14 8.2709 6.3927 -0.4652 22 1 8.8075 6.6633 0.8928 23 1 8.8498 7.3638 -1.4281 24 1 6.7924 6.5314 -0.4500 25 6 8.5500 -0.2325 -0.0072 26 6 7.9800 -1.2268 1.0093 27 6 3.6451 -1.1862 -0.1193 28 1 -0.3633 -1.0243 0.0826 29 1 -0.3633 0.5838 0.8457 30 1 -0.3633 0.4406 -0.9285 31 1 0.4097 -2.2557 0.3135 32 1 1.5711 -3.0100 -0.8086 33 1 1.8812 -2.7190 2.2153 34 1 1.6108 -4.2314 1.3159 35 1 3.7635 -3.8866 0.1146 36 1 4.0047 -3.9733 1.8759 37 1 4.2322 -0.4009 2.2887 38 1 4.8698 0.2220 1.1748 39 1 6.2042 0.5858 2.2992 40 1 6.2082 2.2474 0.4977 41 1 6.2185 0.9593 -0.7315 42 1 8.3983 1.4318 1.3527 43 1 9.7538 2.0774 -0.6615 44 1 8.2740 1.9808 -1.6459 45 1 9.7594 5.2184 -2.5830 46 1 9.6390 -0.2664 0.0220 47 1 8.2039 -0.4954 -1.0068 48 1 8.3964 -1.0205 1.9952 49 1 8.2342 -2.2430 0.7083 50 1 4.0283 -0.1665 -0.0794 51 1 3.9312 -1.6472 -1.0648 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000567473157.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:03:07 Heat of formation + Delta-G solvation = -134.772594 kcal Electronic energy + Delta-G solvation = -31878.642730 eV Core-core repulsion = 27777.147772 eV Total energy + Delta-G solvation = -4101.494958 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.204 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -42.40532 -40.79377 -39.18918 -38.52948 -36.91627 -35.69457 -34.04453 -33.50918 -32.59448 -31.84666 -30.32338 -29.76864 -26.78567 -26.40202 -24.99976 -24.46483 -23.46339 -22.32730 -21.34461 -20.57129 -19.97207 -18.48511 -18.37255 -18.24675 -18.04680 -17.27664 -16.81822 -16.56835 -16.16689 -16.09537 -15.84754 -15.34952 -15.31969 -15.14479 -14.74227 -14.56390 -14.42755 -14.37598 -14.03398 -13.89951 -13.67832 -13.48115 -13.29183 -13.12188 -13.01416 -13.00475 -12.80993 -12.55001 -12.54209 -12.38444 -12.20682 -12.01662 -11.87645 -11.80288 -11.65913 -11.40759 -11.15127 -10.93168 -10.90361 -10.57804 -10.52512 -9.79767 -9.68024 -8.18162 -6.27578 1.21163 1.39745 1.42280 1.49453 1.59580 1.73777 1.99363 2.41326 2.97325 3.10941 3.15702 3.34251 3.54206 3.62356 3.80723 3.92794 3.95892 3.97734 4.03300 4.09196 4.19161 4.27938 4.32090 4.41863 4.47318 4.55885 4.58573 4.66318 4.68100 4.75930 4.80244 4.81464 4.86049 4.89516 5.01076 5.05272 5.19226 5.23131 5.25562 5.31212 5.35633 5.41548 5.45050 5.53063 5.76881 5.86512 6.18000 6.25875 6.27299 6.37139 6.87018 6.88687 7.12035 7.41182 8.93629 Molecular weight = 338.20amu Principal moments of inertia in cm(-1) A = 0.012438 B = 0.003552 C = 0.002920 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2250.682241 B = 7880.323773 C = 9587.617660 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.502 3.498 3 O -0.597 6.597 4 N -0.602 5.602 5 C 0.093 3.907 6 C -0.124 4.124 7 C -0.091 4.091 8 C 0.119 3.881 9 O -0.547 6.547 10 C 0.493 3.507 11 O -0.564 6.564 12 N -0.600 5.600 13 C 0.096 3.904 14 C -0.110 4.110 15 C -0.072 4.072 16 C 0.034 3.966 17 C -0.529 4.529 18 H 0.065 0.935 19 C -0.001 4.001 20 N -0.936 5.936 21 Si 0.958 3.042 22 H -0.265 1.265 23 H -0.287 1.287 24 H -0.269 1.269 25 C -0.121 4.121 26 C 0.116 3.884 27 C 0.077 3.923 28 H 0.116 0.884 29 H 0.101 0.899 30 H 0.103 0.897 31 H 0.129 0.871 32 H 0.088 0.912 33 H 0.070 0.930 34 H 0.111 0.889 35 H 0.087 0.913 36 H 0.069 0.931 37 H 0.383 0.617 38 H 0.095 0.905 39 H 0.097 0.903 40 H 0.074 0.926 41 H 0.042 0.958 42 H 0.067 0.933 43 H -0.010 1.010 44 H -0.017 1.017 45 H 0.261 0.739 46 H 0.076 0.924 47 H 0.046 0.954 48 H 0.086 0.914 49 H 0.086 0.914 50 H 0.090 0.910 51 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.796 -17.325 7.950 28.211 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.293 3.707 3 O -0.477 6.477 4 N -0.335 5.335 5 C -0.027 4.027 6 C -0.162 4.162 7 C -0.129 4.129 8 C 0.074 3.926 9 O -0.358 6.358 10 C 0.280 3.720 11 O -0.443 6.443 12 N -0.333 5.333 13 C -0.026 4.026 14 C -0.148 4.148 15 C -0.090 4.090 16 C -0.003 4.003 17 C -0.567 4.567 18 H 0.084 0.916 19 C -0.199 4.199 20 N -0.577 5.577 21 Si 0.783 3.217 22 H -0.190 1.190 23 H -0.212 1.212 24 H -0.194 1.194 25 C -0.159 4.159 26 C -0.005 4.005 27 C -0.047 4.047 28 H 0.134 0.866 29 H 0.119 0.881 30 H 0.121 0.879 31 H 0.146 0.854 32 H 0.106 0.894 33 H 0.089 0.911 34 H 0.129 0.871 35 H 0.105 0.895 36 H 0.088 0.912 37 H 0.238 0.762 38 H 0.113 0.887 39 H 0.115 0.885 40 H 0.092 0.908 41 H 0.061 0.939 42 H 0.085 0.915 43 H 0.008 0.992 44 H 0.001 0.999 45 H 0.070 0.930 46 H 0.095 0.905 47 H 0.064 0.936 48 H 0.104 0.896 49 H 0.104 0.896 50 H 0.108 0.892 51 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -20.400 -17.812 7.822 28.189 hybrid contribution 1.068 1.891 -0.565 2.244 sum -19.332 -15.921 7.257 26.074 Atomic orbital electron populations 1.22069 0.87695 1.06897 1.06095 1.21782 0.92613 0.82247 0.74036 1.90750 1.71872 1.32929 1.52193 1.48148 1.05273 1.07884 1.72237 1.22338 0.98247 0.82429 0.99721 1.21888 0.92894 1.02351 0.99063 1.21393 0.96848 0.90821 1.03853 1.21749 0.88430 0.96694 0.85704 1.86612 1.85025 1.29857 1.34350 1.21724 0.90393 0.83609 0.76287 1.90652 1.77175 1.27880 1.48597 1.48288 1.07336 1.08138 1.69499 1.22297 0.98280 0.81274 1.00751 1.21733 0.95828 0.99215 0.98040 1.21038 0.94717 0.93667 0.99618 1.18996 0.94209 0.93597 0.93506 1.21637 1.32211 0.92332 1.10526 0.91650 1.25935 0.95169 1.03721 0.95037 1.70098 1.37771 1.32244 1.17602 0.85609 0.78759 0.79068 0.78303 1.18963 1.21232 1.19402 1.21911 1.00946 0.94679 0.98389 1.21663 0.78634 1.00161 1.00084 1.22284 0.82783 1.01771 0.97858 0.86589 0.88057 0.87873 0.85377 0.89427 0.91107 0.87068 0.89467 0.91190 0.76192 0.88735 0.88478 0.90777 0.93880 0.91457 0.99206 0.99863 0.93010 0.90523 0.93562 0.89555 0.89594 0.89172 0.90077 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.73 10.11 71.24 0.72 -1.01 16 2 C 0.50 10.63 7.80 87.66 0.68 11.31 16 3 O -0.60 -19.23 16.52 -3.03 -0.05 -19.28 16 4 N -0.60 -10.88 2.91 -818.94 -2.39 -13.26 16 5 C 0.09 0.86 6.31 86.36 0.54 1.40 16 6 C -0.12 -1.35 5.94 30.67 0.18 -1.17 16 7 C -0.09 -1.67 4.26 30.62 0.13 -1.54 16 8 C 0.12 2.73 0.68 -11.46 -0.01 2.72 16 9 O -0.55 -12.45 12.06 -148.98 -1.80 -14.24 16 10 C 0.49 14.22 6.70 87.66 0.59 14.81 16 11 O -0.56 -19.13 15.43 -3.03 -0.05 -19.18 16 12 N -0.60 -17.06 2.97 -818.92 -2.43 -19.49 16 13 C 0.10 2.58 4.50 86.36 0.39 2.97 16 14 C -0.11 -3.93 5.19 30.67 0.16 -3.77 16 15 C -0.07 -2.82 2.10 -10.76 -0.02 -2.84 16 16 C 0.03 1.77 4.45 29.85 0.13 1.90 16 17 C -0.53 -29.52 8.39 25.60 0.21 -29.31 16 18 H 0.07 3.44 7.05 -2.91 -0.02 3.42 16 19 C 0.00 -0.08 5.46 84.66 0.46 0.39 16 20 N -0.94 -57.75 13.29 21.45 0.28 -57.46 16 21 Si 0.96 44.68 29.54 68.60 2.03 46.70 16 22 H -0.26 -11.76 7.11 99.48 0.71 -11.05 16 23 H -0.29 -13.23 7.11 99.48 0.71 -12.52 16 24 H -0.27 -12.16 7.11 99.48 0.71 -11.45 16 25 C -0.12 -4.12 5.36 30.68 0.16 -3.95 16 26 C 0.12 3.36 6.44 86.36 0.56 3.92 16 27 C 0.08 1.80 5.05 86.36 0.44 2.24 16 28 H 0.12 0.34 5.14 -2.39 -0.01 0.33 16 29 H 0.10 0.97 8.14 -2.39 -0.02 0.95 16 30 H 0.10 0.96 8.14 -2.38 -0.02 0.94 16 31 H 0.13 0.34 5.13 -2.39 -0.01 0.33 16 32 H 0.09 0.61 8.14 -2.39 -0.02 0.59 16 33 H 0.07 0.95 7.61 -2.38 -0.02 0.93 16 34 H 0.11 0.60 8.14 -2.39 -0.02 0.58 16 35 H 0.09 1.59 8.02 -2.39 -0.02 1.57 16 36 H 0.07 1.43 8.14 -2.39 -0.02 1.41 16 37 H 0.38 8.24 5.22 -74.06 -0.39 7.85 16 38 H 0.10 2.38 2.50 -2.39 -0.01 2.38 16 39 H 0.10 2.27 8.14 -2.39 -0.02 2.25 16 40 H 0.07 2.88 6.91 -2.38 -0.02 2.86 16 41 H 0.04 1.66 8.14 -2.39 -0.02 1.64 16 42 H 0.07 2.55 8.14 -2.38 -0.02 2.54 16 43 H -0.01 -0.59 8.14 -2.38 -0.02 -0.61 16 44 H -0.02 -0.99 8.14 -2.39 -0.02 -1.01 16 45 H 0.26 15.26 8.31 -92.71 -0.77 14.49 16 46 H 0.08 2.52 8.14 -2.39 -0.02 2.50 16 47 H 0.05 1.70 8.14 -2.39 -0.02 1.68 16 48 H 0.09 2.19 8.14 -2.39 -0.02 2.17 16 49 H 0.09 2.55 7.00 -2.39 -0.02 2.53 16 50 H 0.09 2.53 4.38 -2.38 -0.01 2.52 16 51 H 0.08 1.89 8.14 -2.39 -0.02 1.87 16 Total: -1.00 -77.94 384.02 1.49 -76.45 By element: Atomic # 1 Polarization: 21.14 SS G_CDS: 0.56 Total: 21.70 kcal Atomic # 6 Polarization: -7.27 SS G_CDS: 5.33 Total: -1.94 kcal Atomic # 7 Polarization: -85.68 SS G_CDS: -4.54 Total: -90.21 kcal Atomic # 8 Polarization: -50.80 SS G_CDS: -1.89 Total: -52.70 kcal Atomic # 14 Polarization: 44.68 SS G_CDS: 2.03 Total: 46.70 kcal Total: -77.94 1.49 -76.45 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000567473157.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.319 kcal (2) G-P(sol) polarization free energy of solvation -77.943 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -136.262 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.490 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.453 kcal (6) G-S(sol) free energy of system = (1) + (5) -134.773 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds