Wall clock time and date at job start Tue Mar 31 2020 21:18:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46899 * 1 3 3 C 1.46903 * 110.99711 * 2 1 4 4 C 1.50710 * 109.46694 * 293.95143 * 3 2 1 5 5 H 1.07997 * 120.00057 * 0.02562 * 4 3 2 6 6 C 1.37881 * 119.99503 * 179.97438 * 4 3 2 7 7 N 1.31516 * 119.99724 * 179.97438 * 6 4 3 8 8 Si 1.86798 * 120.00229 * 0.02562 * 6 4 3 9 9 H 1.48505 * 109.47208 * 89.99563 * 8 6 4 10 10 H 1.48491 * 109.47221 * 209.99490 * 8 6 4 11 11 H 1.48499 * 109.47004 * 329.99986 * 8 6 4 12 12 C 1.46898 * 111.00113 * 123.94769 * 2 1 3 13 13 C 1.53007 * 109.47076 * 164.01039 * 12 2 1 14 14 H 1.09003 * 109.46534 * 58.51070 * 13 12 2 15 15 O 1.42899 * 109.47330 * 298.51307 * 13 12 2 16 16 C 1.52998 * 109.46962 * 178.51087 * 13 12 2 17 17 N 1.46897 * 109.46931 * 185.00319 * 16 13 12 18 18 C 1.46901 * 111.00080 * 180.02562 * 17 16 13 19 19 H 1.09000 * 109.46963 * 35.00304 * 18 17 16 20 20 C 1.52995 * 109.47204 * 274.99763 * 18 17 16 21 21 O 1.42896 * 109.47563 * 295.00312 * 20 18 17 22 22 C 1.53007 * 109.47087 * 154.99739 * 18 17 16 23 23 C 1.50695 * 109.47157 * 295.00162 * 22 18 17 24 24 C 1.38265 * 119.94372 * 269.72569 * 23 22 18 25 25 C 1.38147 * 120.05436 * 179.73225 * 24 23 22 26 26 C 1.38738 * 119.94273 * 0.56138 * 25 24 23 27 27 O 1.35895 * 120.05434 * 179.68881 * 26 25 24 28 28 C 1.38730 * 119.88822 * 359.71272 * 26 25 24 29 29 C 1.38149 * 119.94454 * 359.97438 * 28 26 25 30 30 H 1.08997 * 109.47421 * 301.53120 * 1 2 3 31 31 H 1.08998 * 109.47418 * 61.53691 * 1 2 3 32 32 H 1.09003 * 109.46814 * 181.53239 * 1 2 3 33 33 H 1.08999 * 109.47541 * 53.95222 * 3 2 1 34 34 H 1.09000 * 109.47007 * 173.95742 * 3 2 1 35 35 H 0.96996 * 119.99971 * 180.02562 * 7 6 4 36 36 H 1.09002 * 109.46723 * 44.01793 * 12 2 1 37 37 H 1.08996 * 109.47437 * 284.01331 * 12 2 1 38 38 H 0.96693 * 113.99957 * 299.99849 * 15 13 12 39 39 H 1.09003 * 109.47493 * 305.00173 * 16 13 12 40 40 H 1.08997 * 109.47097 * 65.00378 * 16 13 12 41 41 H 1.00908 * 111.00223 * 303.95848 * 17 16 13 42 42 H 1.09001 * 109.46886 * 54.99928 * 20 18 17 43 43 H 1.09000 * 109.47330 * 174.99524 * 20 18 17 44 44 H 0.96701 * 114.00563 * 180.02562 * 21 20 18 45 45 H 1.09000 * 109.46886 * 55.00232 * 22 18 17 46 46 H 1.09001 * 109.47144 * 174.99712 * 22 18 17 47 47 H 1.07996 * 119.96985 * 359.97370 * 24 23 22 48 48 H 1.08001 * 120.02965 * 180.25347 * 25 24 23 49 49 H 0.96701 * 113.99836 * 270.02663 * 27 26 25 50 50 H 1.07996 * 120.02698 * 179.97438 * 28 26 25 51 51 H 1.08002 * 119.97109 * 179.97438 * 29 28 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.6368 2.0471 -1.2986 5 1 1.0739 1.5114 -2.0486 6 6 2.0266 3.3495 -1.5286 7 7 1.7141 3.9389 -2.6620 8 14 2.9997 4.2763 -0.2311 9 1 4.4521 4.0638 -0.4559 10 1 2.6915 5.7260 -0.3228 11 1 2.6291 3.7757 1.1170 12 6 1.9955 -0.7658 1.1376 13 6 3.4729 -1.0838 0.8984 14 1 4.0282 -0.1547 0.7697 15 8 3.6035 -1.8838 -0.2784 16 6 4.0308 -1.8493 2.1000 17 7 5.4754 -2.0499 1.9248 18 6 6.0467 -2.7838 3.0619 19 1 5.3225 -3.5136 3.4240 20 6 6.3858 -1.8013 4.1846 21 8 7.4197 -0.9170 3.7476 22 6 7.3191 -3.5066 2.6150 23 6 6.9671 -4.5602 1.5967 24 6 6.6653 -5.8449 2.0090 25 6 6.3368 -6.8112 1.0779 26 6 6.3214 -6.4945 -0.2727 27 8 6.0048 -7.4448 -1.1911 28 6 6.6301 -5.2061 -0.6842 29 6 6.9516 -4.2418 0.2513 30 1 -0.3634 0.5374 0.8759 31 1 -0.3634 0.4898 -0.9034 32 1 -0.3633 -1.0273 0.0275 33 1 1.5610 1.9274 0.8309 34 1 3.0797 1.3445 0.1082 35 1 1.9887 4.8550 -2.8240 36 1 1.4357 -1.6955 1.2399 37 1 1.8934 -0.1780 2.0498 38 1 3.1335 -2.7277 -0.2345 39 1 3.8512 -1.2775 3.0104 40 1 3.5360 -2.8175 2.1755 41 1 5.6722 -2.5215 1.0547 42 1 5.4982 -1.2234 4.4420 43 1 6.7263 -2.3538 5.0604 44 1 7.6862 -0.2654 4.4105 45 1 8.0082 -2.7881 2.1711 46 1 7.7912 -3.9778 3.4771 47 1 6.6825 -6.0923 3.0602 48 1 6.0972 -7.8136 1.4007 49 1 6.7654 -7.9439 -1.5188 50 1 6.6191 -4.9572 -1.7351 51 1 7.1924 -3.2387 -0.0686 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000570044554.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:18:27 Heat of formation + Delta-G solvation = -108.905320 kcal Electronic energy + Delta-G solvation = -30053.997413 eV Core-core repulsion = 25953.624144 eV Total energy + Delta-G solvation = -4100.373269 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.204 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -40.20441 -38.71269 -37.75382 -36.88332 -35.79392 -34.87407 -32.40790 -32.22752 -31.26514 -29.97158 -28.66829 -27.83304 -25.97616 -25.31030 -23.24385 -23.02617 -21.94442 -21.40712 -20.49777 -19.84562 -18.67897 -17.65985 -16.93749 -16.51685 -16.16964 -16.07607 -15.92078 -15.58238 -15.23296 -14.79404 -14.64010 -14.33989 -14.22137 -13.96071 -13.73295 -13.63622 -13.45438 -13.14233 -12.87562 -12.74491 -12.52599 -12.27672 -12.14483 -12.06060 -11.72536 -11.54406 -11.38320 -11.26159 -11.03972 -10.97580 -10.71803 -10.66686 -10.44816 -10.12381 -10.09507 -9.84218 -9.58366 -9.25414 -9.15746 -8.71907 -8.49316 -8.41094 -7.29154 -5.98110 -3.94489 0.93391 1.08569 3.32622 3.34619 3.41024 3.42753 3.90340 3.95730 4.17312 4.44133 4.48506 4.58529 4.63606 4.72236 4.83710 4.89351 5.05577 5.08271 5.14537 5.17958 5.26671 5.29537 5.33028 5.35937 5.46748 5.48381 5.57004 5.62431 5.66776 5.73919 5.77817 5.92656 5.95689 6.04815 6.06504 6.18137 6.27528 6.35124 6.46499 6.55790 6.70596 6.90155 6.98773 7.03638 7.37506 7.40345 7.56499 7.66493 7.92336 8.08576 8.12001 8.73281 9.11028 9.63874 11.15253 Molecular weight = 338.20amu Principal moments of inertia in cm(-1) A = 0.011064 B = 0.002890 C = 0.002575 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2530.175084 B = 9687.830587 C =10869.205247 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.039 3.961 2 N -0.521 5.521 3 C 0.161 3.839 4 C -0.504 4.504 5 H 0.080 0.920 6 C 0.067 3.933 7 N -0.902 5.902 8 Si 0.873 3.127 9 H -0.274 1.274 10 H -0.287 1.287 11 H -0.269 1.269 12 C 0.024 3.976 13 C 0.115 3.885 14 H 0.109 0.891 15 O -0.538 6.538 16 C 0.028 3.972 17 N -0.672 5.672 18 C 0.093 3.907 19 H 0.054 0.946 20 C 0.088 3.912 21 O -0.555 6.555 22 C -0.078 4.078 23 C -0.097 4.097 24 C -0.104 4.104 25 C -0.145 4.145 26 C 0.099 3.901 27 O -0.500 6.500 28 C -0.135 4.135 29 C -0.097 4.097 30 H 0.010 0.990 31 H 0.079 0.921 32 H 0.045 0.955 33 H -0.015 1.015 34 H 0.026 0.974 35 H 0.263 0.737 36 H 0.062 0.938 37 H 0.030 0.970 38 H 0.360 0.640 39 H 0.075 0.925 40 H 0.028 0.972 41 H 0.352 0.648 42 H 0.045 0.955 43 H 0.042 0.958 44 H 0.372 0.628 45 H 0.093 0.907 46 H 0.076 0.924 47 H 0.123 0.877 48 H 0.126 0.874 49 H 0.388 0.612 50 H 0.132 0.868 51 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.356 -21.913 15.055 29.318 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 N -0.244 5.244 3 C 0.035 3.965 4 C -0.543 4.543 5 H 0.098 0.902 6 C -0.134 4.134 7 N -0.541 5.541 8 Si 0.701 3.299 9 H -0.200 1.200 10 H -0.213 1.213 11 H -0.194 1.194 12 C -0.106 4.106 13 C 0.055 3.945 14 H 0.127 0.873 15 O -0.341 6.341 16 C -0.102 4.102 17 N -0.307 5.307 18 C -0.017 4.017 19 H 0.072 0.928 20 C 0.009 3.991 21 O -0.359 6.359 22 C -0.116 4.116 23 C -0.097 4.097 24 C -0.122 4.122 25 C -0.164 4.164 26 C 0.054 3.946 27 O -0.310 6.310 28 C -0.154 4.154 29 C -0.115 4.115 30 H 0.029 0.971 31 H 0.098 0.902 32 H 0.064 0.936 33 H 0.003 0.997 34 H 0.044 0.956 35 H 0.073 0.927 36 H 0.081 0.919 37 H 0.048 0.952 38 H 0.205 0.795 39 H 0.093 0.907 40 H 0.046 0.954 41 H 0.174 0.826 42 H 0.063 0.937 43 H 0.060 0.940 44 H 0.218 0.782 45 H 0.111 0.889 46 H 0.095 0.905 47 H 0.141 0.859 48 H 0.144 0.856 49 H 0.244 0.756 50 H 0.149 0.851 51 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 12.426 -20.998 14.101 28.181 hybrid contribution -0.090 -0.221 1.947 1.962 sum 12.337 -21.220 16.048 29.326 Atomic orbital electron populations 1.22228 0.88231 0.99184 1.01272 1.61859 1.06911 1.16478 1.39178 1.20236 0.95103 0.83985 0.97160 1.21023 1.35354 0.97048 1.00838 0.90166 1.24894 0.95816 0.97387 0.95276 1.69896 1.47130 1.13251 1.23850 0.86884 0.81162 0.79168 0.82700 1.19953 1.21286 1.19420 1.22723 0.96029 0.98375 0.93446 1.21970 0.94507 0.94663 0.83404 0.87294 1.86701 1.75185 1.33293 1.38931 1.22745 0.88367 0.98894 1.00195 1.60447 1.11878 1.53455 1.04900 1.21565 0.95261 0.92719 0.92186 0.92841 1.22167 0.90525 0.91641 0.94730 1.86582 1.56248 1.48785 1.44273 1.20685 0.97774 0.95673 0.97456 1.20023 1.00276 0.94796 0.94635 1.20911 0.99472 0.92498 0.99309 1.21389 1.02070 1.00318 0.92620 1.18512 0.99092 0.88820 0.88134 1.84848 1.36687 1.50574 1.58855 1.21509 1.00086 0.92952 1.00824 1.21112 0.98679 0.99610 0.92091 0.97145 0.90209 0.93629 0.99714 0.95593 0.92748 0.91906 0.95172 0.79467 0.90689 0.95415 0.82566 0.93690 0.94008 0.78172 0.88866 0.90531 0.85861 0.85636 0.75588 0.85055 0.84801 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.77 9.32 60.06 0.56 1.33 16 2 N -0.52 -11.22 4.60 -244.36 -1.12 -12.34 16 3 C 0.16 4.06 3.64 -4.97 -0.02 4.04 16 4 C -0.50 -14.84 9.09 -34.43 -0.31 -15.16 16 5 H 0.08 2.57 7.34 -52.49 -0.39 2.18 16 6 C 0.07 2.01 5.47 -17.82 -0.10 1.92 16 7 N -0.90 -28.37 13.96 55.43 0.77 -27.59 16 8 Si 0.87 22.20 27.47 -169.99 -4.67 17.53 16 9 H -0.27 -6.88 7.11 56.52 0.40 -6.48 16 10 H -0.29 -7.18 7.11 56.52 0.40 -6.77 16 11 H -0.27 -6.59 6.54 56.52 0.37 -6.22 16 12 C 0.02 0.41 4.63 -3.82 -0.02 0.39 16 13 C 0.11 1.86 3.23 -26.73 -0.09 1.77 16 14 H 0.11 2.12 6.55 -51.93 -0.34 1.78 16 15 O -0.54 -9.08 12.75 -35.23 -0.45 -9.53 16 16 C 0.03 0.36 5.16 -3.83 -0.02 0.34 16 17 N -0.67 -8.42 6.26 -106.73 -0.67 -9.09 16 18 C 0.09 0.92 2.43 -67.71 -0.16 0.75 16 19 H 0.05 0.50 7.80 -51.93 -0.40 0.09 16 20 C 0.09 0.80 6.80 37.15 0.25 1.05 16 21 O -0.55 -5.73 12.83 -35.23 -0.45 -6.18 16 22 C -0.08 -0.71 4.69 -27.88 -0.13 -0.84 16 23 C -0.10 -0.91 4.84 -104.60 -0.51 -1.42 16 24 C -0.10 -0.88 9.69 -39.60 -0.38 -1.27 16 25 C -0.15 -1.29 9.99 -39.43 -0.39 -1.68 16 26 C 0.10 0.97 6.70 -39.22 -0.26 0.70 16 27 O -0.50 -4.48 13.50 -19.41 -0.26 -4.74 16 28 C -0.14 -1.38 9.99 -39.43 -0.39 -1.77 16 29 C -0.10 -0.99 8.03 -39.60 -0.32 -1.31 16 30 H 0.01 0.19 8.13 -51.93 -0.42 -0.23 16 31 H 0.08 1.74 6.90 -51.93 -0.36 1.38 16 32 H 0.04 0.75 7.97 -51.93 -0.41 0.34 16 33 H -0.01 -0.37 7.17 -51.93 -0.37 -0.75 16 34 H 0.03 0.67 5.81 -51.93 -0.30 0.36 16 35 H 0.26 7.73 8.31 -40.82 -0.34 7.39 16 36 H 0.06 0.91 7.88 -51.93 -0.41 0.51 16 37 H 0.03 0.50 8.05 -51.93 -0.42 0.09 16 38 H 0.36 4.82 9.04 45.56 0.41 5.23 16 39 H 0.07 0.91 7.36 -51.93 -0.38 0.53 16 40 H 0.03 0.32 8.05 -51.93 -0.42 -0.10 16 41 H 0.35 4.56 5.05 -39.29 -0.20 4.36 16 42 H 0.04 0.42 7.35 -51.93 -0.38 0.04 16 43 H 0.04 0.29 8.14 -51.93 -0.42 -0.14 16 44 H 0.37 2.32 9.12 45.56 0.42 2.74 16 45 H 0.09 0.98 7.67 -51.93 -0.40 0.58 16 46 H 0.08 0.57 8.08 -51.93 -0.42 0.15 16 47 H 0.12 0.80 8.06 -52.49 -0.42 0.38 16 48 H 0.13 0.91 8.06 -52.49 -0.42 0.49 16 49 H 0.39 1.54 9.06 45.56 0.41 1.95 16 50 H 0.13 1.25 8.06 -52.49 -0.42 0.83 16 51 H 0.13 1.40 7.53 -52.49 -0.40 1.01 16 LS Contribution 408.38 15.07 6.15 6.15 Total: -1.00 -36.19 408.38 -9.03 -45.22 By element: Atomic # 1 Polarization: 17.76 SS G_CDS: -6.04 Total: 11.72 kcal Atomic # 6 Polarization: -8.85 SS G_CDS: -2.29 Total: -11.14 kcal Atomic # 7 Polarization: -48.00 SS G_CDS: -1.02 Total: -49.02 kcal Atomic # 8 Polarization: -19.29 SS G_CDS: -1.16 Total: -20.46 kcal Atomic # 14 Polarization: 22.20 SS G_CDS: -4.67 Total: 17.53 kcal Total LS contribution 6.15 Total: 6.15 kcal Total: -36.19 -9.03 -45.22 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000570044554.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.687 kcal (2) G-P(sol) polarization free energy of solvation -36.190 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.877 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.028 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.219 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.905 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds