Wall clock time and date at job start Tue Mar 31 2020 21:18:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46899 * 1 3 3 C 1.46907 * 110.99823 * 2 1 4 4 C 1.50705 * 109.46801 * 66.05050 * 3 2 1 5 5 H 1.08000 * 120.00039 * 359.97438 * 4 3 2 6 6 C 1.37881 * 119.99700 * 179.97438 * 4 3 2 7 7 N 1.31511 * 119.99833 * 180.02562 * 6 4 3 8 8 Si 1.86805 * 119.99965 * 0.02562 * 6 4 3 9 9 H 1.48498 * 109.47198 * 90.00036 * 8 6 4 10 10 H 1.48495 * 109.46726 * 209.99884 * 8 6 4 11 11 H 1.48501 * 109.47041 * 329.99507 * 8 6 4 12 12 C 1.46904 * 110.99898 * 236.05098 * 2 1 3 13 13 C 1.53000 * 109.46815 * 199.84806 * 12 2 1 14 14 H 1.08991 * 109.47409 * 300.46172 * 13 12 2 15 15 O 1.42903 * 109.47034 * 60.46535 * 13 12 2 16 16 C 1.53002 * 109.46726 * 180.45976 * 13 12 2 17 17 N 1.46904 * 109.46821 * 180.02562 * 16 13 12 18 18 C 1.46901 * 110.99783 * 180.02562 * 17 16 13 19 19 H 1.09005 * 109.47196 * 35.00235 * 18 17 16 20 20 C 1.53002 * 109.47457 * 275.00147 * 18 17 16 21 21 O 1.42898 * 109.46883 * 295.00425 * 20 18 17 22 22 C 1.52996 * 109.47157 * 154.99739 * 18 17 16 23 23 C 1.50697 * 109.47366 * 295.00166 * 22 18 17 24 24 C 1.38266 * 119.94465 * 269.72519 * 23 22 18 25 25 C 1.38147 * 120.05009 * 179.72698 * 24 23 22 26 26 C 1.38729 * 119.94497 * 0.56734 * 25 24 23 27 27 O 1.35906 * 120.05419 * 179.68349 * 26 25 24 28 28 C 1.38727 * 119.89054 * 359.70430 * 26 25 24 29 29 C 1.38135 * 119.94436 * 0.02562 * 28 26 25 30 30 H 1.08999 * 109.47104 * 188.77408 * 1 2 3 31 31 H 1.09004 * 109.47084 * 308.77040 * 1 2 3 32 32 H 1.09003 * 109.47573 * 68.76964 * 1 2 3 33 33 H 1.09002 * 109.46729 * 186.04432 * 3 2 1 34 34 H 1.08997 * 109.47420 * 306.04937 * 3 2 1 35 35 H 0.96998 * 119.99991 * 180.02562 * 7 6 4 36 36 H 1.09000 * 109.46764 * 79.84935 * 12 2 1 37 37 H 1.09001 * 109.46788 * 319.85129 * 12 2 1 38 38 H 0.96697 * 113.99811 * 59.99410 * 15 13 12 39 39 H 1.09001 * 109.47341 * 300.00227 * 16 13 12 40 40 H 1.09001 * 109.47182 * 60.00436 * 16 13 12 41 41 H 1.00899 * 111.00018 * 56.05258 * 17 16 13 42 42 H 1.09008 * 109.46920 * 55.00048 * 20 18 17 43 43 H 1.08998 * 109.47044 * 175.00043 * 20 18 17 44 44 H 0.96697 * 113.99836 * 179.97438 * 21 20 18 45 45 H 1.09008 * 109.46660 * 55.00374 * 22 18 17 46 46 H 1.08994 * 109.47314 * 174.99856 * 22 18 17 47 47 H 1.07998 * 119.97384 * 359.97438 * 24 23 22 48 48 H 1.08004 * 120.02030 * 180.25060 * 25 24 23 49 49 H 0.96695 * 113.99849 * 270.02676 * 27 26 25 50 50 H 1.08003 * 120.02372 * 179.97438 * 28 26 25 51 51 H 1.08007 * 119.97467 * 179.97438 * 29 28 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.6369 2.0471 1.2986 5 1 1.0740 1.5114 2.0486 6 6 2.0276 3.3491 1.5290 7 7 1.7153 3.9386 2.6624 8 14 3.0007 4.2759 0.2314 9 1 2.0641 4.9805 -0.6804 10 1 3.8879 5.2668 0.8919 11 1 3.8238 3.3171 -0.5487 12 6 1.9954 -0.7659 -1.1377 13 6 3.4449 -1.1665 -0.8557 14 1 4.0463 -0.2705 -0.7028 15 8 3.4945 -1.9797 0.3183 16 6 3.9968 -1.9544 -2.0455 17 7 5.3883 -2.3396 -1.7746 18 6 5.9526 -3.0990 -2.8983 19 1 5.5491 -2.7152 -3.8354 20 6 5.5840 -4.5767 -2.7516 21 8 6.2098 -5.1099 -1.5828 22 6 7.4754 -2.9509 -2.9004 23 6 7.8401 -1.5134 -3.1676 24 6 8.0328 -1.0802 -4.4664 25 6 8.3616 0.2385 -4.7142 26 6 8.5099 1.1255 -3.6579 27 8 8.8396 2.4218 -3.8988 28 6 8.3214 0.6871 -2.3553 29 6 7.9873 -0.6312 -2.1131 30 1 -0.3633 -1.0156 0.1568 31 1 -0.3633 0.6435 0.8013 32 1 -0.3634 0.3721 -0.9579 33 1 3.0797 1.3444 -0.1082 34 1 1.5611 1.9275 -0.8308 35 1 1.9898 4.8547 2.8244 36 1 1.9565 -0.1524 -2.0378 37 1 1.3922 -1.6622 -1.2825 38 1 2.9803 -2.7960 0.2533 39 1 3.3953 -2.8504 -2.1985 40 1 3.9589 -1.3341 -2.9411 41 1 5.4580 -2.8615 -0.9139 42 1 4.5021 -4.6740 -2.6610 43 1 5.9260 -5.1253 -3.6292 44 1 6.0192 -6.0449 -1.4265 45 1 7.8710 -3.2519 -1.9302 46 1 7.9010 -3.5844 -3.6785 47 1 7.9224 -1.7724 -5.2880 48 1 8.5081 0.5773 -5.7293 49 1 9.7919 2.5889 -3.9147 50 1 8.4367 1.3757 -1.5313 51 1 7.8409 -0.9732 -1.0991 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000570044555.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:18:30 Heat of formation + Delta-G solvation = -111.276317 kcal Electronic energy + Delta-G solvation = -30153.219136 eV Core-core repulsion = 26052.743052 eV Total energy + Delta-G solvation = -4100.476083 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.204 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -39.90061 -38.78525 -37.75511 -36.83786 -35.81461 -34.85766 -32.40048 -32.19471 -30.97991 -29.99803 -28.54676 -27.79402 -25.86708 -25.29035 -23.16983 -22.79103 -21.84047 -21.44884 -20.63342 -19.90009 -18.44515 -17.86733 -16.91423 -16.36498 -16.05366 -15.96462 -15.77348 -15.43354 -15.12192 -14.91465 -14.69500 -14.36779 -14.15353 -13.99783 -13.71101 -13.50910 -13.40823 -13.10428 -12.72920 -12.60499 -12.28477 -12.22017 -12.11005 -12.09310 -11.61109 -11.54623 -11.30628 -11.23011 -11.14012 -11.03269 -10.69676 -10.60479 -10.46614 -10.39187 -10.02637 -9.78874 -9.59770 -9.14847 -8.97354 -8.51062 -8.49776 -8.33157 -7.31043 -5.98230 -3.94734 1.21994 1.37559 3.34501 3.42737 3.47026 3.60722 3.75546 4.12154 4.16743 4.49279 4.53078 4.68703 4.74409 4.81233 4.90659 4.96055 5.00222 5.10224 5.12740 5.22559 5.30355 5.34480 5.37254 5.39945 5.51435 5.55491 5.65548 5.69176 5.76249 5.81666 5.94543 5.96207 6.06211 6.09310 6.24505 6.29684 6.44430 6.46839 6.64740 6.70996 6.82920 6.90207 6.97990 7.03346 7.24524 7.45944 7.59709 7.67517 7.92076 8.08137 8.11438 8.72888 9.10552 9.63953 11.15003 Molecular weight = 338.20amu Principal moments of inertia in cm(-1) A = 0.008227 B = 0.003761 C = 0.002767 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3402.635105 B = 7442.861234 C =10116.140310 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 N -0.520 5.520 3 C 0.162 3.838 4 C -0.506 4.506 5 H 0.081 0.919 6 C 0.069 3.931 7 N -0.901 5.901 8 Si 0.872 3.128 9 H -0.279 1.279 10 H -0.285 1.285 11 H -0.266 1.266 12 C 0.023 3.977 13 C 0.117 3.883 14 H 0.107 0.893 15 O -0.537 6.537 16 C 0.030 3.970 17 N -0.670 5.670 18 C 0.095 3.905 19 H 0.086 0.914 20 C 0.044 3.956 21 O -0.565 6.565 22 C -0.062 4.062 23 C -0.076 4.076 24 C -0.111 4.111 25 C -0.150 4.150 26 C 0.095 3.905 27 O -0.501 6.501 28 C -0.144 4.144 29 C -0.069 4.069 30 H 0.046 0.954 31 H 0.083 0.917 32 H 0.008 0.992 33 H 0.030 0.970 34 H -0.020 1.020 35 H 0.263 0.737 36 H 0.032 0.968 37 H 0.061 0.939 38 H 0.359 0.641 39 H 0.026 0.974 40 H 0.075 0.925 41 H 0.358 0.642 42 H 0.044 0.956 43 H 0.047 0.953 44 H 0.379 0.621 45 H 0.083 0.917 46 H 0.069 0.931 47 H 0.119 0.881 48 H 0.122 0.878 49 H 0.385 0.615 50 H 0.126 0.874 51 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.081 -18.295 -16.814 28.080 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 N -0.243 5.243 3 C 0.036 3.964 4 C -0.544 4.544 5 H 0.099 0.901 6 C -0.133 4.133 7 N -0.541 5.541 8 Si 0.700 3.300 9 H -0.205 1.205 10 H -0.211 1.211 11 H -0.190 1.190 12 C -0.106 4.106 13 C 0.057 3.943 14 H 0.125 0.875 15 O -0.339 6.339 16 C -0.100 4.100 17 N -0.303 5.303 18 C -0.015 4.015 19 H 0.104 0.896 20 C -0.036 4.036 21 O -0.370 6.370 22 C -0.100 4.100 23 C -0.076 4.076 24 C -0.129 4.129 25 C -0.169 4.169 26 C 0.051 3.949 27 O -0.310 6.310 28 C -0.163 4.163 29 C -0.087 4.087 30 H 0.065 0.935 31 H 0.101 0.899 32 H 0.026 0.974 33 H 0.048 0.952 34 H -0.002 1.002 35 H 0.073 0.927 36 H 0.050 0.950 37 H 0.080 0.920 38 H 0.204 0.796 39 H 0.044 0.956 40 H 0.093 0.907 41 H 0.179 0.821 42 H 0.063 0.937 43 H 0.065 0.935 44 H 0.225 0.775 45 H 0.101 0.899 46 H 0.087 0.913 47 H 0.137 0.863 48 H 0.140 0.860 49 H 0.241 0.759 50 H 0.144 0.856 51 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 13.512 -16.547 -16.249 26.840 hybrid contribution -0.485 -0.734 -1.763 1.971 sum 13.027 -17.281 -18.012 28.156 Atomic orbital electron populations 1.22270 0.88315 1.00385 1.00270 1.61867 1.06877 1.16403 1.39196 1.20230 0.95354 0.83976 0.96889 1.21022 1.35349 0.97086 1.00921 0.90131 1.24880 0.95719 0.97372 0.95280 1.69891 1.47061 1.13219 1.23886 0.86905 0.80714 0.80172 0.82242 1.20466 1.21087 1.19047 1.22727 0.96210 0.98249 0.93451 1.21932 0.94906 0.93903 0.83566 0.87501 1.86719 1.73219 1.35769 1.38240 1.22699 0.88925 0.98502 0.99916 1.60345 1.17948 1.46723 1.05250 1.21686 0.95446 0.88749 0.95657 0.89588 1.22958 0.96124 0.96511 0.87966 1.86485 1.74786 1.30121 1.45599 1.20465 0.94411 0.92138 1.03007 1.19746 0.98979 0.96092 0.92786 1.20856 1.00531 0.95161 0.96323 1.21291 1.03403 0.93387 0.98775 1.18498 1.00850 0.83394 0.92206 1.84865 1.28741 1.23469 1.93944 1.21506 1.01985 0.96545 0.96241 1.20946 0.96107 0.92093 0.99563 0.93499 0.89879 0.97399 0.95242 1.00194 0.92732 0.95021 0.92042 0.79638 0.95621 0.90668 0.82070 0.93743 0.93458 0.77457 0.89859 0.91286 0.86279 0.86019 0.75939 0.85560 0.85228 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.70 9.37 60.06 0.56 1.27 16 2 N -0.52 -11.13 4.56 -244.36 -1.11 -12.24 16 3 C 0.16 4.08 3.62 -4.97 -0.02 4.07 16 4 C -0.51 -14.88 8.94 -34.44 -0.31 -15.19 16 5 H 0.08 2.57 7.41 -52.49 -0.39 2.18 16 6 C 0.07 2.06 5.47 -17.82 -0.10 1.96 16 7 N -0.90 -28.38 13.96 55.43 0.77 -27.61 16 8 Si 0.87 22.52 27.47 -169.99 -4.67 17.86 16 9 H -0.28 -7.05 7.11 56.52 0.40 -6.65 16 10 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 11 H -0.27 -6.71 6.54 56.52 0.37 -6.34 16 12 C 0.02 0.39 4.66 -3.82 -0.02 0.37 16 13 C 0.12 1.84 3.30 -26.73 -0.09 1.75 16 14 H 0.11 2.07 6.78 -51.93 -0.35 1.72 16 15 O -0.54 -8.68 12.55 -35.23 -0.44 -9.13 16 16 C 0.03 0.36 5.19 -3.82 -0.02 0.34 16 17 N -0.67 -7.65 5.63 -106.72 -0.60 -8.25 16 18 C 0.10 0.86 2.40 -67.71 -0.16 0.70 16 19 H 0.09 0.78 7.80 -51.93 -0.40 0.37 16 20 C 0.04 0.32 6.72 37.16 0.25 0.57 16 21 O -0.56 -4.31 12.24 -35.23 -0.43 -4.74 16 22 C -0.06 -0.57 4.74 -27.89 -0.13 -0.70 16 23 C -0.08 -0.82 4.95 -104.60 -0.52 -1.34 16 24 C -0.11 -1.13 9.69 -39.60 -0.38 -1.51 16 25 C -0.15 -1.66 9.99 -39.43 -0.39 -2.06 16 26 C 0.09 1.19 6.70 -39.22 -0.26 0.92 16 27 O -0.50 -5.91 13.50 -19.44 -0.26 -6.17 16 28 C -0.14 -1.87 9.99 -39.44 -0.39 -2.27 16 29 C -0.07 -0.85 9.30 -39.61 -0.37 -1.22 16 30 H 0.05 0.78 8.14 -51.93 -0.42 0.35 16 31 H 0.08 1.82 6.66 -51.93 -0.35 1.48 16 32 H 0.01 0.14 8.13 -51.93 -0.42 -0.28 16 33 H 0.03 0.77 5.69 -51.93 -0.30 0.47 16 34 H -0.02 -0.50 7.55 -51.93 -0.39 -0.89 16 35 H 0.26 7.75 8.31 -40.82 -0.34 7.42 16 36 H 0.03 0.53 8.00 -51.93 -0.42 0.12 16 37 H 0.06 0.87 7.94 -51.93 -0.41 0.46 16 38 H 0.36 4.39 9.04 45.56 0.41 4.80 16 39 H 0.03 0.26 7.36 -51.93 -0.38 -0.12 16 40 H 0.07 0.92 8.05 -51.93 -0.42 0.50 16 41 H 0.36 4.39 7.33 -39.29 -0.29 4.11 16 42 H 0.04 0.31 7.35 -51.92 -0.38 -0.07 16 43 H 0.05 0.27 8.14 -51.93 -0.42 -0.15 16 44 H 0.38 1.37 9.12 45.56 0.42 1.79 16 45 H 0.08 0.84 7.67 -51.92 -0.40 0.44 16 46 H 0.07 0.52 8.08 -51.93 -0.42 0.10 16 47 H 0.12 0.94 8.06 -52.49 -0.42 0.51 16 48 H 0.12 1.15 8.06 -52.48 -0.42 0.73 16 49 H 0.39 2.49 9.06 45.56 0.41 2.90 16 50 H 0.13 1.59 8.06 -52.48 -0.42 1.17 16 51 H 0.13 1.61 8.06 -52.48 -0.42 1.18 16 LS Contribution 411.56 15.07 6.20 6.20 Total: -1.00 -35.92 411.56 -9.08 -45.00 By element: Atomic # 1 Polarization: 17.61 SS G_CDS: -6.18 Total: 11.43 kcal Atomic # 6 Polarization: -10.00 SS G_CDS: -2.35 Total: -12.35 kcal Atomic # 7 Polarization: -47.16 SS G_CDS: -0.94 Total: -48.10 kcal Atomic # 8 Polarization: -18.90 SS G_CDS: -1.14 Total: -20.03 kcal Atomic # 14 Polarization: 22.52 SS G_CDS: -4.67 Total: 17.86 kcal Total LS contribution 6.20 Total: 6.20 kcal Total: -35.92 -9.08 -45.00 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000570044555.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.279 kcal (2) G-P(sol) polarization free energy of solvation -35.919 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.198 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.078 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.997 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.276 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds