Wall clock time and date at job start Tue Mar 31 2020 21:18:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46899 * 1 3 3 C 1.46907 * 110.99823 * 2 1 4 4 C 1.50705 * 109.46801 * 66.05050 * 3 2 1 5 5 H 1.08000 * 120.00039 * 359.97438 * 4 3 2 6 6 C 1.37881 * 119.99700 * 179.97438 * 4 3 2 7 7 N 1.31511 * 119.99833 * 180.02562 * 6 4 3 8 8 Si 1.86805 * 119.99965 * 0.02562 * 6 4 3 9 9 H 1.48498 * 109.47198 * 90.00036 * 8 6 4 10 10 H 1.48495 * 109.46726 * 209.99884 * 8 6 4 11 11 H 1.48501 * 109.47041 * 329.99507 * 8 6 4 12 12 C 1.46904 * 110.99898 * 236.05098 * 2 1 3 13 13 C 1.53000 * 109.46815 * 199.84806 * 12 2 1 14 14 H 1.08991 * 109.47409 * 300.46172 * 13 12 2 15 15 O 1.42903 * 109.47034 * 60.46535 * 13 12 2 16 16 C 1.53002 * 109.46726 * 180.45976 * 13 12 2 17 17 N 1.46904 * 109.46821 * 180.02562 * 16 13 12 18 18 C 1.46901 * 110.99783 * 180.02562 * 17 16 13 19 19 H 1.09005 * 109.47196 * 35.00235 * 18 17 16 20 20 C 1.53002 * 109.47457 * 275.00147 * 18 17 16 21 21 O 1.42898 * 109.46883 * 295.00425 * 20 18 17 22 22 C 1.52996 * 109.47157 * 154.99739 * 18 17 16 23 23 C 1.50697 * 109.47366 * 295.00166 * 22 18 17 24 24 C 1.38266 * 119.94465 * 269.72519 * 23 22 18 25 25 C 1.38147 * 120.05009 * 179.72698 * 24 23 22 26 26 C 1.38729 * 119.94497 * 0.56734 * 25 24 23 27 27 O 1.35906 * 120.05419 * 179.68349 * 26 25 24 28 28 C 1.38727 * 119.89054 * 359.70430 * 26 25 24 29 29 C 1.38135 * 119.94436 * 0.02562 * 28 26 25 30 30 H 1.08999 * 109.47104 * 188.77408 * 1 2 3 31 31 H 1.09004 * 109.47084 * 308.77040 * 1 2 3 32 32 H 1.09003 * 109.47573 * 68.76964 * 1 2 3 33 33 H 1.09002 * 109.46729 * 186.04432 * 3 2 1 34 34 H 1.08997 * 109.47420 * 306.04937 * 3 2 1 35 35 H 0.96998 * 119.99991 * 180.02562 * 7 6 4 36 36 H 1.09000 * 109.46764 * 79.84935 * 12 2 1 37 37 H 1.09001 * 109.46788 * 319.85129 * 12 2 1 38 38 H 0.96697 * 113.99811 * 59.99410 * 15 13 12 39 39 H 1.09001 * 109.47341 * 300.00227 * 16 13 12 40 40 H 1.09001 * 109.47182 * 60.00436 * 16 13 12 41 41 H 1.00899 * 111.00018 * 56.05258 * 17 16 13 42 42 H 1.09008 * 109.46920 * 55.00048 * 20 18 17 43 43 H 1.08998 * 109.47044 * 175.00043 * 20 18 17 44 44 H 0.96697 * 113.99836 * 179.97438 * 21 20 18 45 45 H 1.09008 * 109.46660 * 55.00374 * 22 18 17 46 46 H 1.08994 * 109.47314 * 174.99856 * 22 18 17 47 47 H 1.07998 * 119.97384 * 359.97438 * 24 23 22 48 48 H 1.08004 * 120.02030 * 180.25060 * 25 24 23 49 49 H 0.96695 * 113.99849 * 270.02676 * 27 26 25 50 50 H 1.08003 * 120.02372 * 179.97438 * 28 26 25 51 51 H 1.08007 * 119.97467 * 179.97438 * 29 28 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.6369 2.0471 1.2986 5 1 1.0740 1.5114 2.0486 6 6 2.0276 3.3491 1.5290 7 7 1.7153 3.9386 2.6624 8 14 3.0007 4.2759 0.2314 9 1 2.0641 4.9805 -0.6804 10 1 3.8879 5.2668 0.8919 11 1 3.8238 3.3171 -0.5487 12 6 1.9954 -0.7659 -1.1377 13 6 3.4449 -1.1665 -0.8557 14 1 4.0463 -0.2705 -0.7028 15 8 3.4945 -1.9797 0.3183 16 6 3.9968 -1.9544 -2.0455 17 7 5.3883 -2.3396 -1.7746 18 6 5.9526 -3.0990 -2.8983 19 1 5.5491 -2.7152 -3.8354 20 6 5.5840 -4.5767 -2.7516 21 8 6.2098 -5.1099 -1.5828 22 6 7.4754 -2.9509 -2.9004 23 6 7.8401 -1.5134 -3.1676 24 6 8.0328 -1.0802 -4.4664 25 6 8.3616 0.2385 -4.7142 26 6 8.5099 1.1255 -3.6579 27 8 8.8396 2.4218 -3.8988 28 6 8.3214 0.6871 -2.3553 29 6 7.9873 -0.6312 -2.1131 30 1 -0.3633 -1.0156 0.1568 31 1 -0.3633 0.6435 0.8013 32 1 -0.3634 0.3721 -0.9579 33 1 3.0797 1.3444 -0.1082 34 1 1.5611 1.9275 -0.8308 35 1 1.9898 4.8547 2.8244 36 1 1.9565 -0.1524 -2.0378 37 1 1.3922 -1.6622 -1.2825 38 1 2.9803 -2.7960 0.2533 39 1 3.3953 -2.8504 -2.1985 40 1 3.9589 -1.3341 -2.9411 41 1 5.4580 -2.8615 -0.9139 42 1 4.5021 -4.6740 -2.6610 43 1 5.9260 -5.1253 -3.6292 44 1 6.0192 -6.0449 -1.4265 45 1 7.8710 -3.2519 -1.9302 46 1 7.9010 -3.5844 -3.6785 47 1 7.9224 -1.7724 -5.2880 48 1 8.5081 0.5773 -5.7293 49 1 9.7919 2.5889 -3.9147 50 1 8.4367 1.3757 -1.5313 51 1 7.8409 -0.9732 -1.0991 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000570044555.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:18:29 Heat of formation + Delta-G solvation = -144.373804 kcal Electronic energy + Delta-G solvation = -30154.654350 eV Core-core repulsion = 26052.743052 eV Total energy + Delta-G solvation = -4101.911298 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.204 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -40.73425 -39.78302 -38.83051 -37.63850 -37.18307 -35.72343 -34.61155 -33.12248 -31.83998 -31.15085 -30.05999 -29.23212 -26.65301 -26.53166 -24.85645 -23.66439 -22.88003 -22.48999 -21.75476 -21.22872 -19.31073 -19.08647 -18.41454 -17.40475 -17.20435 -16.96427 -16.64794 -16.48910 -16.31559 -16.14217 -15.87704 -15.62803 -15.45844 -15.03649 -14.85122 -14.67002 -14.47915 -14.33492 -14.23767 -13.88174 -13.45910 -13.31718 -13.17179 -13.01806 -12.95429 -12.83626 -12.65440 -12.57567 -12.34529 -12.17977 -11.98000 -11.88429 -11.85676 -11.64390 -11.45651 -11.32248 -10.89884 -10.81004 -10.72327 -9.85435 -9.34864 -9.12758 -8.97727 -8.31040 -6.32799 0.36519 0.50118 1.27969 1.32129 1.42069 2.30378 2.76982 2.91589 3.02707 3.32798 3.36496 3.60629 3.73110 3.85322 3.99136 4.04612 4.12683 4.13333 4.19344 4.32070 4.39595 4.40742 4.45750 4.52862 4.55277 4.58646 4.61663 4.67299 4.71319 4.81099 4.85276 4.90987 4.94471 4.98684 5.03945 5.17773 5.18972 5.21319 5.29055 5.45687 5.54348 5.55737 5.79994 5.96525 6.02373 6.21674 6.37708 6.56975 6.64481 6.73041 6.87762 6.94948 7.06082 7.30263 8.85850 Molecular weight = 338.20amu Principal moments of inertia in cm(-1) A = 0.008227 B = 0.003761 C = 0.002767 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3402.635105 B = 7442.861234 C =10116.140310 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.039 3.961 2 N -0.540 5.540 3 C 0.175 3.825 4 C -0.513 4.513 5 H 0.040 0.960 6 C 0.012 3.988 7 N -0.946 5.946 8 Si 0.940 3.060 9 H -0.264 1.264 10 H -0.279 1.279 11 H -0.259 1.259 12 C 0.025 3.975 13 C 0.124 3.876 14 H 0.062 0.938 15 O -0.558 6.558 16 C 0.046 3.954 17 N -0.685 5.685 18 C 0.094 3.906 19 H 0.092 0.908 20 C 0.050 3.950 21 O -0.584 6.584 22 C -0.056 4.056 23 C -0.077 4.077 24 C -0.105 4.105 25 C -0.154 4.154 26 C 0.081 3.919 27 O -0.516 6.516 28 C -0.169 4.169 29 C -0.083 4.083 30 H 0.081 0.919 31 H 0.046 0.954 32 H 0.021 0.979 33 H 0.021 0.979 34 H -0.019 1.019 35 H 0.267 0.733 36 H 0.036 0.964 37 H 0.098 0.902 38 H 0.377 0.623 39 H 0.053 0.947 40 H 0.074 0.926 41 H 0.352 0.648 42 H 0.049 0.951 43 H 0.068 0.932 44 H 0.395 0.605 45 H 0.069 0.931 46 H 0.092 0.908 47 H 0.151 0.849 48 H 0.140 0.860 49 H 0.406 0.594 50 H 0.116 0.884 51 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.460 -20.520 -20.281 31.836 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 N -0.264 5.264 3 C 0.048 3.952 4 C -0.551 4.551 5 H 0.058 0.942 6 C -0.185 4.185 7 N -0.587 5.587 8 Si 0.763 3.237 9 H -0.189 1.189 10 H -0.204 1.204 11 H -0.183 1.183 12 C -0.104 4.104 13 C 0.063 3.937 14 H 0.080 0.920 15 O -0.363 6.363 16 C -0.084 4.084 17 N -0.317 5.317 18 C -0.016 4.016 19 H 0.110 0.890 20 C -0.029 4.029 21 O -0.392 6.392 22 C -0.094 4.094 23 C -0.077 4.077 24 C -0.123 4.123 25 C -0.172 4.172 26 C 0.037 3.963 27 O -0.329 6.329 28 C -0.188 4.188 29 C -0.101 4.101 30 H 0.099 0.901 31 H 0.065 0.935 32 H 0.040 0.960 33 H 0.039 0.961 34 H -0.001 1.001 35 H 0.076 0.924 36 H 0.054 0.946 37 H 0.116 0.884 38 H 0.225 0.775 39 H 0.071 0.929 40 H 0.093 0.907 41 H 0.172 0.828 42 H 0.067 0.933 43 H 0.086 0.914 44 H 0.245 0.755 45 H 0.087 0.913 46 H 0.111 0.889 47 H 0.168 0.832 48 H 0.158 0.842 49 H 0.264 0.736 50 H 0.134 0.866 51 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 13.890 -18.813 -19.732 30.598 hybrid contribution -0.619 -0.132 -0.599 0.871 sum 13.271 -18.945 -20.332 30.797 Atomic orbital electron populations 1.22235 0.87286 1.01770 0.99592 1.61747 1.08015 1.14330 1.42266 1.19906 0.94822 0.86157 0.94334 1.21271 1.34589 0.97364 1.01905 0.94209 1.25753 0.96850 0.98429 0.97511 1.70032 1.48653 1.13891 1.26091 0.85830 0.79423 0.78830 0.79567 1.18866 1.20442 1.18317 1.22847 0.97094 0.98820 0.91629 1.21723 0.93815 0.93127 0.84989 0.92004 1.86673 1.73894 1.36864 1.38892 1.22454 0.89572 0.98864 0.97555 1.60299 1.17775 1.47756 1.05918 1.21745 0.94992 0.90054 0.94800 0.88999 1.22866 0.96321 0.95138 0.88605 1.86451 1.75063 1.31738 1.45971 1.20454 0.94698 0.91178 1.03054 1.19966 0.98326 0.96758 0.92694 1.21199 0.99024 0.95305 0.96798 1.21551 1.02922 0.93609 0.99165 1.18666 1.01376 0.83887 0.92368 1.84796 1.30868 1.23385 1.93876 1.21578 1.03605 0.96958 0.96634 1.20962 0.97065 0.92337 0.99766 0.90050 0.93516 0.96018 0.96147 1.00106 0.92404 0.94624 0.88407 0.77523 0.92881 0.90749 0.82772 0.93310 0.91388 0.75526 0.91250 0.88926 0.83166 0.84217 0.73603 0.86609 0.86387 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.49 9.37 127.69 1.20 2.69 16 2 N -0.54 -22.83 4.56 -927.00 -4.22 -27.05 16 3 C 0.18 8.93 3.62 85.56 0.31 9.24 16 4 C -0.51 -31.27 8.94 25.60 0.23 -31.04 16 5 H 0.04 2.68 7.41 -2.91 -0.02 2.66 16 6 C 0.01 0.73 5.47 84.66 0.46 1.20 16 7 N -0.95 -61.39 13.96 21.45 0.30 -61.09 16 8 Si 0.94 47.17 27.47 68.60 1.88 49.06 16 9 H -0.26 -12.55 7.11 99.48 0.71 -11.85 16 10 H -0.28 -13.65 7.11 99.48 0.71 -12.94 16 11 H -0.26 -12.62 6.54 99.48 0.65 -11.97 16 12 C 0.02 0.78 4.66 86.30 0.40 1.18 16 13 C 0.12 3.77 3.30 30.59 0.10 3.87 16 14 H 0.06 2.46 6.78 -2.39 -0.02 2.44 16 15 O -0.56 -17.58 12.55 -148.98 -1.87 -19.45 16 16 C 0.05 0.98 5.19 86.30 0.45 1.43 16 17 N -0.68 -14.61 5.63 -491.55 -2.77 -17.38 16 18 C 0.09 1.44 2.40 44.91 0.11 1.55 16 19 H 0.09 1.32 7.80 -2.38 -0.02 1.30 16 20 C 0.05 0.54 6.72 71.98 0.48 1.02 16 21 O -0.58 -7.41 12.24 -148.98 -1.82 -9.24 16 22 C -0.06 -0.89 4.74 29.85 0.14 -0.75 16 23 C -0.08 -1.56 4.95 -19.85 -0.10 -1.66 16 24 C -0.11 -1.87 9.69 22.25 0.22 -1.66 16 25 C -0.15 -3.13 9.99 22.37 0.22 -2.91 16 26 C 0.08 2.01 6.70 22.50 0.15 2.16 16 27 O -0.52 -11.99 13.50 -92.49 -1.25 -13.24 16 28 C -0.17 -4.56 9.99 22.36 0.22 -4.33 16 29 C -0.08 -2.10 9.30 22.25 0.21 -1.89 16 30 H 0.08 2.51 8.14 -2.39 -0.02 2.49 16 31 H 0.05 2.09 6.66 -2.39 -0.02 2.08 16 32 H 0.02 0.75 8.13 -2.39 -0.02 0.73 16 33 H 0.02 1.08 5.69 -2.39 -0.01 1.07 16 34 H -0.02 -0.94 7.55 -2.39 -0.02 -0.96 16 35 H 0.27 16.14 8.31 -92.71 -0.77 15.37 16 36 H 0.04 1.11 8.00 -2.39 -0.02 1.09 16 37 H 0.10 2.36 7.94 -2.39 -0.02 2.34 16 38 H 0.38 8.43 9.04 -74.06 -0.67 7.76 16 39 H 0.05 0.87 7.36 -2.39 -0.02 0.85 16 40 H 0.07 1.63 8.05 -2.39 -0.02 1.61 16 41 H 0.35 8.27 7.33 -89.69 -0.66 7.61 16 42 H 0.05 0.49 7.35 -2.38 -0.02 0.48 16 43 H 0.07 0.48 8.14 -2.39 -0.02 0.46 16 44 H 0.40 1.81 9.12 -74.06 -0.68 1.14 16 45 H 0.07 1.32 7.67 -2.38 -0.02 1.30 16 46 H 0.09 1.05 8.08 -2.39 -0.02 1.03 16 47 H 0.15 1.70 8.06 -2.91 -0.02 1.68 16 48 H 0.14 2.27 8.06 -2.91 -0.02 2.25 16 49 H 0.41 5.05 9.06 -74.06 -0.67 4.38 16 50 H 0.12 3.18 8.06 -2.91 -0.02 3.16 16 51 H 0.12 3.13 8.06 -2.91 -0.02 3.11 16 Total: -1.00 -80.94 411.56 -6.71 -87.66 By element: Atomic # 1 Polarization: 32.41 SS G_CDS: -1.77 Total: 30.65 kcal Atomic # 6 Polarization: -24.72 SS G_CDS: 4.80 Total: -19.92 kcal Atomic # 7 Polarization: -98.83 SS G_CDS: -6.69 Total: -105.52 kcal Atomic # 8 Polarization: -36.98 SS G_CDS: -4.94 Total: -41.92 kcal Atomic # 14 Polarization: 47.17 SS G_CDS: 1.88 Total: 49.06 kcal Total: -80.94 -6.71 -87.66 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000570044555.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.717 kcal (2) G-P(sol) polarization free energy of solvation -80.944 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -137.661 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.713 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.657 kcal (6) G-S(sol) free energy of system = (1) + (5) -144.374 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds