Wall clock time and date at job start Tue Mar 31 2020 21:17:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42906 * 113.99530 * 2 1 4 4 C 1.53003 * 109.46657 * 180.02562 * 3 2 1 5 5 C 1.50699 * 109.46918 * 180.02562 * 4 3 2 6 6 C 1.38125 * 120.01275 * 265.27602 * 5 4 3 7 7 C 1.38680 * 120.01961 * 180.27668 * 6 5 4 8 8 O 1.36008 * 119.98048 * 179.69925 * 7 6 5 9 9 C 1.38720 * 120.03864 * 359.72270 * 7 6 5 10 10 C 1.38087 * 120.01766 * 359.97438 * 9 7 6 11 11 C 1.38843 * 120.00961 * 84.99979 * 5 4 3 12 12 N 1.39949 * 120.01827 * 359.97438 * 11 5 4 13 13 C 1.46500 * 120.00001 * 179.73101 * 12 11 5 14 14 C 1.52998 * 109.47040 * 180.02562 * 13 12 11 15 15 H 1.08992 * 109.47135 * 59.99586 * 14 13 12 16 16 O 1.42897 * 109.46674 * 299.99593 * 14 13 12 17 17 C 1.53004 * 109.46799 * 179.97438 * 14 13 12 18 18 N 1.46898 * 109.46619 * 184.99872 * 17 14 13 19 19 C 1.46901 * 111.00443 * 66.04574 * 18 17 14 20 20 C 1.46906 * 110.99820 * 189.99887 * 18 17 14 21 21 C 1.50696 * 109.47351 * 169.99890 * 20 18 17 22 22 H 1.08007 * 119.99780 * 0.02562 * 21 20 18 23 23 C 1.37878 * 120.00506 * 180.02562 * 21 20 18 24 24 N 1.31515 * 119.99253 * 359.97438 * 23 21 20 25 25 Si 1.86795 * 120.00341 * 180.02562 * 23 21 20 26 26 H 1.48502 * 109.47212 * 89.99910 * 25 23 21 27 27 H 1.48494 * 109.47103 * 209.99646 * 25 23 21 28 28 H 1.48502 * 109.46911 * 329.99720 * 25 23 21 29 29 H 1.09003 * 109.46907 * 179.97438 * 1 2 3 30 30 H 1.08992 * 109.47553 * 299.99674 * 1 2 3 31 31 H 1.09006 * 109.47380 * 60.00060 * 1 2 3 32 32 H 1.09000 * 109.46890 * 60.00420 * 3 2 1 33 33 H 1.08996 * 109.47202 * 299.99729 * 3 2 1 34 34 H 1.08996 * 109.47259 * 59.99927 * 4 3 2 35 35 H 1.09004 * 109.46581 * 299.99771 * 4 3 2 36 36 H 1.08005 * 119.99224 * 359.97178 * 6 5 4 37 37 H 0.96701 * 113.99872 * 270.02122 * 8 7 6 38 38 H 1.07998 * 119.98920 * 179.97438 * 9 7 6 39 39 H 1.08001 * 120.00794 * 179.97438 * 10 9 7 40 40 H 0.96996 * 119.99603 * 359.73280 * 12 11 5 41 41 H 1.08996 * 109.47268 * 59.99754 * 13 12 11 42 42 H 1.09009 * 109.46730 * 300.00215 * 13 12 11 43 43 H 0.96701 * 114.00549 * 300.00026 * 16 14 13 44 44 H 1.08994 * 109.47270 * 64.99737 * 17 14 13 45 45 H 1.08999 * 109.47017 * 304.99614 * 17 14 13 46 46 H 1.09002 * 109.47401 * 183.95136 * 19 18 17 47 47 H 1.09001 * 109.46874 * 63.95149 * 19 18 17 48 48 H 1.09004 * 109.46970 * 303.95282 * 19 18 17 49 49 H 1.08997 * 109.46995 * 289.99871 * 20 18 17 50 50 H 1.09001 * 109.46848 * 49.99877 * 20 18 17 51 51 H 0.96999 * 119.99606 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3056 0.0000 4 6 3.5354 1.1847 -0.0006 5 6 4.1483 2.5615 0.0000 6 6 4.5188 3.1533 -1.1918 7 6 5.0881 4.4179 -1.1909 8 8 5.4583 4.9974 -2.3643 9 6 5.2807 5.0919 0.0062 10 6 4.9051 4.5043 1.1980 11 6 4.3354 3.2377 1.1981 12 7 3.9545 2.6414 2.4055 13 6 4.1576 3.3529 3.6699 14 6 3.6600 2.4862 4.8284 15 1 4.2158 1.5488 4.8456 16 8 2.2685 2.2118 4.6544 17 6 3.8727 3.2291 6.1490 18 7 3.5067 2.3515 7.2688 19 6 4.4217 1.2060 7.3609 20 6 3.4699 3.0988 8.5330 21 6 2.8591 2.2375 9.6081 22 1 2.5313 1.2350 9.3757 23 6 2.7185 2.7292 10.8886 24 7 3.1181 3.9498 11.1717 25 14 1.9620 1.6613 12.2214 26 1 3.0312 0.8877 12.9023 27 1 1.2676 2.5230 13.2115 28 1 0.9857 0.7240 11.6100 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5137 0.8899 31 1 -0.3634 0.5138 -0.8900 32 1 1.6885 1.8464 0.8900 33 1 1.6885 1.8464 -0.8900 34 1 3.8567 0.6440 -0.8908 35 1 3.8573 0.6437 0.8892 36 1 4.3697 2.6291 -2.1242 37 1 6.3679 4.8033 -2.6291 38 1 5.7245 6.0765 0.0060 39 1 5.0555 5.0290 2.1299 40 1 3.5561 1.7571 2.4051 41 1 3.6021 4.2906 3.6525 42 1 5.2191 3.5620 3.8028 43 1 1.7118 3.0021 4.6298 44 1 3.2483 4.1222 6.1681 45 1 4.9203 3.5162 6.2397 46 1 4.0871 0.5363 8.1531 47 1 5.4273 1.5614 7.5862 48 1 4.4299 0.6703 6.4116 49 1 4.4841 3.3751 8.8214 50 1 2.8703 4.0000 8.4050 51 1 3.0189 4.2958 12.0724 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000578007204.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:17:01 Heat of formation + Delta-G solvation = -110.639385 kcal Electronic energy + Delta-G solvation = -29281.267360 eV Core-core repulsion = 25180.818896 eV Total energy + Delta-G solvation = -4100.448464 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.204 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -40.32397 -38.50655 -38.15347 -37.30680 -35.74529 -34.40454 -33.50101 -32.57239 -30.41446 -29.55397 -28.13128 -27.10562 -26.51523 -25.91884 -24.18181 -23.69665 -22.13490 -21.50397 -21.04925 -20.26858 -18.17067 -17.69952 -16.93126 -16.61295 -16.40778 -16.15678 -16.00503 -15.59431 -15.45124 -15.07503 -14.94862 -14.46418 -14.42403 -14.13637 -13.94574 -13.58477 -13.51240 -13.31771 -13.25217 -12.72245 -12.63610 -12.33197 -12.04500 -11.96531 -11.89223 -11.45707 -11.41856 -11.38986 -11.22007 -10.98558 -10.83921 -10.74190 -10.58000 -10.37191 -10.12708 -10.06675 -9.88004 -9.73754 -9.19397 -9.07482 -8.47314 -7.47358 -7.28220 -6.06309 -4.07438 1.09761 1.26792 3.19112 3.29864 3.35947 3.36169 3.41149 3.60831 4.15008 4.35960 4.49535 4.57783 4.60524 4.65378 4.82840 4.90620 4.96414 5.04102 5.11692 5.15776 5.19500 5.20529 5.26127 5.29961 5.33877 5.43290 5.45904 5.51161 5.55239 5.55893 5.68319 5.84122 5.93871 6.02658 6.07971 6.11479 6.19219 6.29711 6.32088 6.48627 6.69743 6.89886 7.06554 7.20493 7.26319 7.49484 7.57621 7.74954 7.82340 8.03164 8.13221 8.49308 9.00332 9.56970 11.04664 Molecular weight = 338.20amu Principal moments of inertia in cm(-1) A = 0.013742 B = 0.002181 C = 0.001939 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2037.118817 B =12836.948500 C =14438.997837 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.393 6.393 3 C 0.064 3.936 4 C -0.069 4.069 5 C -0.149 4.149 6 C -0.088 4.088 7 C 0.036 3.964 8 O -0.500 6.500 9 C -0.093 4.093 10 C -0.183 4.183 11 C 0.223 3.777 12 N -0.736 5.736 13 C 0.090 3.910 14 C 0.102 3.898 15 H 0.102 0.898 16 O -0.544 6.544 17 C 0.027 3.973 18 N -0.530 5.530 19 C 0.036 3.964 20 C 0.193 3.807 21 C -0.506 4.506 22 H 0.064 0.936 23 C 0.054 3.946 24 N -0.900 5.900 25 Si 0.899 3.101 26 H -0.281 1.281 27 H -0.287 1.287 28 H -0.272 1.272 29 H 0.086 0.914 30 H 0.044 0.956 31 H 0.039 0.961 32 H 0.053 0.947 33 H 0.049 0.951 34 H 0.080 0.920 35 H 0.076 0.924 36 H 0.126 0.874 37 H 0.380 0.620 38 H 0.125 0.875 39 H 0.127 0.873 40 H 0.406 0.594 41 H 0.064 0.936 42 H 0.068 0.932 43 H 0.372 0.628 44 H 0.073 0.927 45 H 0.031 0.969 46 H 0.074 0.926 47 H 0.011 0.989 48 H 0.045 0.955 49 H -0.010 1.010 50 H 0.029 0.971 51 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.182 -1.049 -26.367 26.579 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.312 6.312 3 C -0.012 4.012 4 C -0.106 4.106 5 C -0.154 4.154 6 C -0.107 4.107 7 C -0.010 4.010 8 O -0.308 6.308 9 C -0.112 4.112 10 C -0.206 4.206 11 C 0.118 3.882 12 N -0.366 5.366 13 C -0.036 4.036 14 C 0.042 3.958 15 H 0.120 0.880 16 O -0.348 6.348 17 C -0.103 4.103 18 N -0.254 5.254 19 C -0.113 4.113 20 C 0.068 3.932 21 C -0.545 4.545 22 H 0.082 0.918 23 C -0.147 4.147 24 N -0.540 5.540 25 Si 0.726 3.274 26 H -0.207 1.207 27 H -0.212 1.212 28 H -0.197 1.197 29 H 0.104 0.896 30 H 0.063 0.937 31 H 0.058 0.942 32 H 0.071 0.929 33 H 0.068 0.932 34 H 0.099 0.901 35 H 0.095 0.905 36 H 0.144 0.856 37 H 0.234 0.766 38 H 0.143 0.857 39 H 0.145 0.855 40 H 0.243 0.757 41 H 0.083 0.917 42 H 0.086 0.914 43 H 0.219 0.781 44 H 0.091 0.909 45 H 0.049 0.951 46 H 0.093 0.907 47 H 0.029 0.971 48 H 0.064 0.936 49 H 0.008 0.992 50 H 0.047 0.953 51 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 2.486 -1.552 -26.086 26.250 hybrid contribution 0.499 0.376 1.029 1.204 sum 2.985 -1.176 -25.057 25.261 Atomic orbital electron populations 1.22740 0.80803 1.02791 1.00101 1.87846 1.19906 1.27979 1.95476 1.22548 0.93358 0.84635 1.00686 1.20242 0.93010 0.93474 1.03892 1.18968 1.07852 0.97134 0.91475 1.21031 0.98447 0.93935 0.97311 1.18138 1.04982 0.92767 0.85152 1.84904 1.34529 1.73906 1.37506 1.21172 0.98898 0.99779 0.91343 1.20544 1.06481 0.95126 0.98467 1.17722 0.92895 0.91819 0.85762 1.44811 1.68267 1.20966 1.02559 1.22141 1.01225 0.96201 0.84024 1.22160 0.83420 0.98812 0.91442 0.88042 1.86593 1.16549 1.36195 1.95448 1.22640 0.99027 0.96526 0.92075 1.62044 1.49167 1.09126 1.05047 1.22263 0.93447 0.94891 1.00661 1.19751 0.95544 0.93632 0.84248 1.21153 1.39652 1.00565 0.93096 0.91804 1.24998 0.95820 0.95180 0.98711 1.69957 1.47776 1.15625 1.20600 0.86484 0.79350 0.80191 0.81336 1.20741 1.21247 1.19722 0.89596 0.93731 0.94247 0.92852 0.93249 0.90120 0.90532 0.85636 0.76595 0.85659 0.85535 0.75684 0.91742 0.91400 0.78144 0.90864 0.95076 0.90678 0.97099 0.93610 0.99225 0.95323 0.92922 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.27 11.01 101.05 1.11 1.38 16 2 O -0.39 -4.25 10.70 -35.23 -0.38 -4.63 16 3 C 0.06 0.62 5.92 37.16 0.22 0.84 16 4 C -0.07 -0.62 5.14 -27.88 -0.14 -0.77 16 5 C -0.15 -1.45 5.15 -104.44 -0.54 -1.99 16 6 C -0.09 -0.83 9.61 -39.46 -0.38 -1.21 16 7 C 0.04 0.35 6.70 -39.24 -0.26 0.08 16 8 O -0.50 -4.40 13.51 -19.77 -0.27 -4.67 16 9 C -0.09 -0.89 9.98 -39.46 -0.39 -1.28 16 10 C -0.18 -1.82 9.31 -39.40 -0.37 -2.19 16 11 C 0.22 2.29 6.64 -83.69 -0.56 1.74 16 12 N -0.74 -7.43 5.53 -58.58 -0.32 -7.75 16 13 C 0.09 0.91 4.58 -4.04 -0.02 0.89 16 14 C 0.10 1.30 3.01 -26.73 -0.08 1.22 16 15 H 0.10 1.37 6.26 -51.93 -0.33 1.04 16 16 O -0.54 -7.55 13.03 -35.23 -0.46 -8.01 16 17 C 0.03 0.43 4.60 -3.82 -0.02 0.42 16 18 N -0.53 -11.01 4.70 -244.37 -1.15 -12.15 16 19 C 0.04 0.68 9.17 60.07 0.55 1.24 16 20 C 0.19 4.93 4.72 -4.97 -0.02 4.91 16 21 C -0.51 -14.12 8.52 -34.44 -0.29 -14.42 16 22 H 0.06 1.78 7.10 -52.48 -0.37 1.41 16 23 C 0.05 1.53 5.46 -17.82 -0.10 1.43 16 24 N -0.90 -26.52 13.29 55.43 0.74 -25.79 16 25 Si 0.90 21.58 29.54 -169.99 -5.02 16.55 16 26 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 27 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 28 H -0.27 -6.46 7.11 56.52 0.40 -6.06 16 29 H 0.09 0.60 8.14 -51.93 -0.42 0.18 16 30 H 0.04 0.36 8.14 -51.93 -0.42 -0.06 16 31 H 0.04 0.28 8.14 -51.93 -0.42 -0.15 16 32 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 33 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 34 H 0.08 0.67 8.05 -51.93 -0.42 0.26 16 35 H 0.08 0.72 6.81 -51.93 -0.35 0.37 16 36 H 0.13 1.01 8.06 -52.48 -0.42 0.59 16 37 H 0.38 1.58 9.06 45.56 0.41 1.99 16 38 H 0.13 1.01 8.06 -52.49 -0.42 0.59 16 39 H 0.13 1.15 6.73 -52.49 -0.35 0.79 16 40 H 0.41 4.25 6.45 -40.82 -0.26 3.99 16 41 H 0.06 0.62 7.95 -51.93 -0.41 0.21 16 42 H 0.07 0.66 7.95 -51.92 -0.41 0.25 16 43 H 0.37 4.23 9.05 45.56 0.41 4.65 16 44 H 0.07 1.15 7.93 -51.93 -0.41 0.74 16 45 H 0.03 0.49 8.12 -51.93 -0.42 0.06 16 46 H 0.07 1.55 6.86 -51.93 -0.36 1.20 16 47 H 0.01 0.20 8.14 -51.93 -0.42 -0.22 16 48 H 0.05 0.74 6.21 -51.93 -0.32 0.42 16 49 H -0.01 -0.27 8.12 -51.93 -0.42 -0.70 16 50 H 0.03 0.78 7.93 -51.93 -0.41 0.36 16 51 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 LS Contribution 415.00 15.07 6.25 6.25 Total: -1.00 -32.74 415.00 -8.84 -41.59 By element: Atomic # 1 Polarization: 13.27 SS G_CDS: -6.95 Total: 6.32 kcal Atomic # 6 Polarization: -6.43 SS G_CDS: -1.29 Total: -7.72 kcal Atomic # 7 Polarization: -44.96 SS G_CDS: -0.74 Total: -45.70 kcal Atomic # 8 Polarization: -16.20 SS G_CDS: -1.10 Total: -17.31 kcal Atomic # 14 Polarization: 21.58 SS G_CDS: -5.02 Total: 16.55 kcal Total LS contribution 6.25 Total: 6.25 kcal Total: -32.74 -8.84 -41.59 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000578007204.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.051 kcal (2) G-P(sol) polarization free energy of solvation -32.745 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.796 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.843 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.588 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.639 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds