Wall clock time and date at job start Tue Mar 31 2020 21:12:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46899 * 1 3 3 C 1.46904 * 110.99840 * 2 1 4 4 C 1.46901 * 110.99869 * 123.94773 * 2 1 3 5 5 C 1.53000 * 109.46718 * 75.95696 * 4 2 1 6 6 H 1.08996 * 109.47171 * 297.60193 * 5 4 2 7 7 C 1.53002 * 109.47047 * 177.60167 * 5 4 2 8 8 O 1.42901 * 109.47093 * 304.99630 * 7 5 4 9 9 N 1.46906 * 109.47365 * 57.60293 * 5 4 2 10 10 C 1.46896 * 111.00036 * 204.99738 * 9 5 4 11 11 C 1.53003 * 109.47127 * 179.97438 * 10 9 5 12 12 H 1.09001 * 109.46754 * 60.00229 * 11 10 9 13 13 O 1.42892 * 109.47137 * 300.00435 * 11 10 9 14 14 C 1.52995 * 109.47112 * 179.97438 * 11 10 9 15 15 O 1.42904 * 109.47104 * 184.99896 * 14 11 10 16 16 C 1.35674 * 116.99747 * 179.97438 * 15 14 11 17 17 C 1.39312 * 119.81324 * 180.02562 * 16 15 14 18 18 C 1.36440 * 120.18458 * 180.25679 * 17 16 15 19 19 C 1.40838 * 119.81085 * 359.45998 * 18 17 16 20 20 C 1.41209 * 120.17943 * 180.25062 * 19 18 17 21 21 H 1.08003 * 120.00077 * 208.48497 * 20 19 18 22 22 C 1.39894 * 120.00143 * 28.49105 * 20 19 18 23 23 N 1.30880 * 119.99926 * 14.59022 * 22 20 19 24 24 Si 1.86801 * 119.99955 * 194.59984 * 22 20 19 25 25 H 1.48500 * 109.47216 * 59.99287 * 24 22 20 26 26 H 1.48497 * 109.46975 * 179.97438 * 24 22 20 27 27 H 1.48503 * 109.47087 * 299.99635 * 24 22 20 28 28 C 1.40830 * 119.63753 * 0.54079 * 19 18 17 29 29 C 1.36435 * 119.81510 * 359.73096 * 28 19 18 30 30 H 1.09001 * 109.47094 * 296.05000 * 1 2 3 31 31 H 1.09001 * 109.46678 * 56.04590 * 1 2 3 32 32 H 1.08996 * 109.46972 * 176.04512 * 1 2 3 33 33 H 1.09002 * 109.47216 * 188.30329 * 3 2 1 34 34 H 1.08999 * 109.47222 * 308.30133 * 3 2 1 35 35 H 1.08999 * 109.47433 * 68.30819 * 3 2 1 36 36 H 1.08997 * 109.47612 * 315.95705 * 4 2 1 37 37 H 1.09008 * 109.47435 * 195.95382 * 4 2 1 38 38 H 1.09003 * 109.47218 * 65.00113 * 7 5 4 39 39 H 1.09006 * 109.47251 * 185.00201 * 7 5 4 40 40 H 0.96703 * 114.00269 * 179.97438 * 8 7 5 41 41 H 1.00902 * 110.99887 * 81.04190 * 9 5 4 42 42 H 1.09001 * 109.47117 * 59.99964 * 10 9 5 43 43 H 1.09000 * 109.47489 * 300.00375 * 10 9 5 44 44 H 0.96699 * 114.00246 * 299.99582 * 13 11 10 45 45 H 1.09010 * 109.46978 * 65.00729 * 14 11 10 46 46 H 1.08996 * 109.47403 * 305.00565 * 14 11 10 47 47 H 1.07998 * 119.91255 * 359.97438 * 17 16 15 48 48 H 1.07998 * 120.09577 * 179.70435 * 18 17 16 49 49 H 0.96995 * 119.99971 * 180.02562 * 23 22 20 50 50 H 1.08008 * 120.09400 * 179.71525 * 28 19 18 51 51 H 1.08003 * 119.90930 * 179.97438 * 29 28 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.9954 -0.7659 1.1377 5 6 1.8513 -2.2626 0.8551 6 1 0.7955 -2.5129 0.7519 7 6 2.4537 -3.0606 2.0133 8 8 3.8056 -2.6480 2.2237 9 7 2.5576 -2.5964 -0.3890 10 6 1.9918 -3.8023 -1.0083 11 6 2.7511 -4.1170 -2.2988 12 1 3.8032 -4.2860 -2.0693 13 8 2.6315 -3.0165 -3.2024 14 6 2.1623 -5.3733 -2.9435 15 8 2.9435 -5.7342 -4.0844 16 6 2.5533 -6.8349 -4.7749 17 6 3.2732 -7.2401 -5.8967 18 6 2.8845 -8.3429 -6.5998 19 6 1.7587 -9.0788 -6.1818 20 6 1.3527 -10.2244 -6.9006 21 1 0.3132 -10.5176 -6.9070 22 6 2.2968 -10.9798 -7.6043 23 7 3.5740 -10.8084 -7.3756 24 14 1.7345 -12.2328 -8.8705 25 1 0.9582 -11.5470 -9.9346 26 1 2.9199 -12.8950 -9.4717 27 1 0.8784 -13.2519 -8.2120 28 6 1.0366 -8.6623 -5.0468 29 6 1.4353 -7.5540 -4.3581 30 1 -0.3633 0.4513 0.9233 31 1 -0.3633 0.5740 -0.8525 32 1 -0.3633 -1.0252 -0.0709 33 1 3.0750 1.3463 -0.1484 34 1 1.5310 1.9389 -0.8065 35 1 1.7710 1.8468 0.9549 36 1 1.4360 -0.5105 2.0377 37 1 3.0481 -0.5233 1.2831 38 1 1.8739 -2.8809 2.9187 39 1 2.4316 -4.1235 1.7726 40 1 4.2511 -3.1130 2.9451 41 1 3.5474 -2.7044 -0.2251 42 1 0.9398 -3.6332 -1.2382 43 1 2.0826 -4.6416 -0.3189 44 1 1.7204 -2.8089 -3.4509 45 1 1.1361 -5.1756 -3.2538 46 1 2.1728 -6.1907 -2.2226 47 1 4.1387 -6.6771 -6.2135 48 1 3.4408 -8.6529 -7.4720 49 1 4.2286 -11.3318 -7.8637 50 1 0.1694 -9.2185 -4.7224 51 1 0.8824 -7.2330 -3.4877 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000579354291.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:12:37 Heat of formation + Delta-G solvation = -133.451919 kcal Electronic energy + Delta-G solvation = -28998.609149 eV Core-core repulsion = 24897.171459 eV Total energy + Delta-G solvation = -4101.437690 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.204 amu Computer time = 1.24 seconds Orbital eigenvalues (eV) -40.66206 -39.73755 -38.68512 -37.62319 -37.39925 -35.52579 -35.13920 -32.30256 -31.60572 -30.93634 -29.75624 -28.38213 -27.21830 -26.81518 -25.59917 -23.31814 -23.01480 -22.44192 -22.23005 -21.16825 -19.23203 -18.80107 -18.39031 -17.65280 -17.26386 -17.04169 -16.76640 -16.36172 -16.06375 -15.93093 -15.73152 -15.58803 -15.35328 -15.23710 -14.81130 -14.77192 -14.39916 -14.05324 -13.90470 -13.76018 -13.62388 -13.20103 -13.13200 -13.03911 -12.93831 -12.79003 -12.72010 -12.61454 -12.48665 -12.36896 -12.08755 -11.87744 -11.80832 -11.65908 -11.56747 -11.18702 -10.95889 -10.89852 -10.82190 -9.56219 -9.12553 -9.01831 -8.87390 -8.56261 -6.23440 0.95981 1.02561 1.40303 1.51507 1.54442 2.24158 2.41674 2.75564 3.05301 3.24588 3.51107 3.63899 3.69868 3.93715 3.99687 4.04057 4.10846 4.19635 4.29148 4.32094 4.36409 4.37566 4.41712 4.47982 4.50438 4.52211 4.62583 4.69073 4.76054 4.81859 4.86107 4.88366 5.02713 5.06320 5.08175 5.10671 5.12202 5.21663 5.29485 5.58211 5.65309 5.88125 6.06806 6.11283 6.24799 6.26655 6.32636 6.53976 6.57618 6.81829 6.86089 6.96200 6.96681 7.10771 8.41257 Molecular weight = 338.20amu Principal moments of inertia in cm(-1) A = 0.025251 B = 0.001752 C = 0.001721 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1108.611976 B =15976.171594 C =16268.389887 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 N -0.542 5.542 3 C 0.029 3.971 4 C 0.078 3.922 5 C 0.096 3.904 6 H 0.092 0.908 7 C 0.046 3.954 8 O -0.585 6.585 9 N -0.657 5.657 10 C 0.045 3.955 11 C 0.126 3.874 12 H 0.088 0.912 13 O -0.557 6.557 14 C 0.031 3.969 15 O -0.332 6.332 16 C 0.006 3.994 17 C -0.138 4.138 18 C -0.146 4.146 19 C 0.054 3.946 20 C -0.501 4.501 21 H 0.077 0.923 22 C 0.031 3.969 23 N -0.838 5.838 24 Si 0.983 3.017 25 H -0.261 1.261 26 H -0.270 1.270 27 H -0.259 1.259 28 C -0.202 4.202 29 C -0.167 4.167 30 H 0.025 0.975 31 H 0.066 0.934 32 H 0.067 0.933 33 H 0.060 0.940 34 H 0.069 0.931 35 H 0.024 0.976 36 H 0.039 0.961 37 H 0.066 0.934 38 H 0.063 0.937 39 H 0.050 0.950 40 H 0.396 0.604 41 H 0.342 0.658 42 H 0.086 0.914 43 H 0.046 0.954 44 H 0.382 0.618 45 H 0.067 0.933 46 H 0.067 0.933 47 H 0.106 0.894 48 H 0.106 0.894 49 H 0.286 0.714 50 H 0.108 0.892 51 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.961 17.126 19.955 26.761 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 N -0.266 5.266 3 C -0.119 4.119 4 C -0.051 4.051 5 C -0.015 4.015 6 H 0.110 0.890 7 C -0.035 4.035 8 O -0.393 6.393 9 N -0.288 5.288 10 C -0.085 4.085 11 C 0.066 3.934 12 H 0.106 0.894 13 O -0.362 6.362 14 C -0.045 4.045 15 O -0.248 6.248 16 C -0.038 4.038 17 C -0.157 4.157 18 C -0.165 4.165 19 C 0.052 3.948 20 C -0.531 4.531 21 H 0.095 0.905 22 C -0.182 4.182 23 N -0.466 5.466 24 Si 0.804 3.196 25 H -0.186 1.186 26 H -0.195 1.195 27 H -0.184 1.184 28 C -0.222 4.222 29 C -0.185 4.185 30 H 0.043 0.957 31 H 0.085 0.915 32 H 0.085 0.915 33 H 0.079 0.921 34 H 0.087 0.913 35 H 0.043 0.957 36 H 0.057 0.943 37 H 0.085 0.915 38 H 0.081 0.919 39 H 0.068 0.932 40 H 0.245 0.755 41 H 0.161 0.839 42 H 0.104 0.896 43 H 0.064 0.936 44 H 0.230 0.770 45 H 0.085 0.915 46 H 0.085 0.915 47 H 0.124 0.876 48 H 0.124 0.876 49 H 0.096 0.904 50 H 0.126 0.874 51 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -4.282 17.777 18.603 26.085 hybrid contribution -0.494 -1.562 1.231 2.049 sum -4.776 16.215 19.834 26.059 Atomic orbital electron populations 1.22395 0.87237 1.02134 1.00283 1.61795 1.07827 1.13420 1.43511 1.22339 1.00640 0.88799 1.00115 1.21921 0.99976 0.92809 0.90402 1.21725 0.98094 0.94620 0.87037 0.88989 1.22907 0.83722 0.97730 0.99094 1.86429 1.26133 1.67538 1.59191 1.60191 1.07497 1.35413 1.25683 1.22430 0.99558 0.92262 0.94272 1.21728 1.00258 0.83208 0.88230 0.89419 1.86606 1.33252 1.50738 1.65647 1.23515 0.95472 0.98268 0.87270 1.85894 1.54483 1.42783 1.41608 1.18715 0.97827 0.90813 0.96439 1.20018 1.00654 0.98757 0.96226 1.20858 1.00374 0.94640 1.00672 1.17955 0.92396 0.92917 0.91574 1.19661 0.95772 1.09171 1.28530 0.90533 1.26736 0.94285 0.99510 0.97698 1.69877 1.02743 1.37662 1.36289 0.85237 0.78706 0.77612 0.78017 1.18575 1.19485 1.18359 1.20854 1.03672 1.00140 0.97541 1.20708 0.97956 0.97950 1.01932 0.95699 0.91498 0.91470 0.92131 0.91257 0.95699 0.94280 0.91496 0.91916 0.93189 0.75459 0.83946 0.89604 0.93594 0.77004 0.91510 0.91525 0.87634 0.87573 0.90363 0.87428 0.85179 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.38 9.39 127.69 1.20 1.58 16 2 N -0.54 -9.30 4.73 -948.83 -4.49 -13.79 16 3 C 0.03 0.45 9.51 127.69 1.21 1.67 16 4 C 0.08 1.21 4.52 86.30 0.39 1.60 16 5 C 0.10 1.36 2.45 44.91 0.11 1.47 16 6 H 0.09 1.18 6.69 -2.39 -0.02 1.16 16 7 C 0.05 0.50 6.72 71.98 0.48 0.99 16 8 O -0.58 -7.37 12.10 -148.98 -1.80 -9.17 16 9 N -0.66 -11.99 5.90 -491.56 -2.90 -14.89 16 10 C 0.04 0.77 5.15 86.30 0.44 1.22 16 11 C 0.13 3.06 3.45 30.59 0.11 3.17 16 12 H 0.09 2.36 8.14 -2.39 -0.02 2.34 16 13 O -0.56 -15.52 13.17 -144.36 -1.90 -17.42 16 14 C 0.03 0.89 4.37 71.98 0.31 1.20 16 15 O -0.33 -13.45 10.09 -85.29 -0.86 -14.31 16 16 C 0.01 0.28 6.71 22.79 0.15 0.43 16 17 C -0.14 -6.94 9.92 22.11 0.22 -6.72 16 18 C -0.15 -7.99 8.61 22.49 0.19 -7.80 16 19 C 0.05 2.96 5.54 -21.28 -0.12 2.84 16 20 C -0.50 -27.39 9.04 23.40 0.21 -27.18 16 21 H 0.08 3.99 7.89 -2.91 -0.02 3.97 16 22 C 0.03 1.58 5.17 85.24 0.44 2.02 16 23 N -0.84 -45.18 11.03 21.82 0.24 -44.94 16 24 Si 0.98 39.00 29.58 68.60 2.03 41.02 16 25 H -0.26 -10.13 7.11 99.48 0.71 -9.42 16 26 H -0.27 -10.21 7.11 99.48 0.71 -9.50 16 27 H -0.26 -9.88 7.11 99.48 0.71 -9.17 16 28 C -0.20 -9.93 9.74 22.48 0.22 -9.71 16 29 C -0.17 -7.30 8.96 22.11 0.20 -7.10 16 30 H 0.02 0.30 8.09 -2.39 -0.02 0.28 16 31 H 0.07 0.90 8.07 -2.39 -0.02 0.89 16 32 H 0.07 0.88 6.94 -2.39 -0.02 0.87 16 33 H 0.06 1.01 8.14 -2.39 -0.02 0.99 16 34 H 0.07 0.99 8.05 -2.39 -0.02 0.97 16 35 H 0.02 0.34 8.13 -2.39 -0.02 0.32 16 36 H 0.04 0.54 7.96 -2.39 -0.02 0.52 16 37 H 0.07 1.26 7.27 -2.38 -0.02 1.24 16 38 H 0.06 0.51 8.14 -2.39 -0.02 0.49 16 39 H 0.05 0.53 7.35 -2.38 -0.02 0.52 16 40 H 0.40 1.86 9.12 -74.06 -0.68 1.19 16 41 H 0.34 7.09 7.94 -89.69 -0.71 6.37 16 42 H 0.09 1.34 8.06 -2.39 -0.02 1.32 16 43 H 0.05 0.70 7.36 -2.39 -0.02 0.69 16 44 H 0.38 8.33 9.05 -74.06 -0.67 7.66 16 45 H 0.07 1.75 7.65 -2.38 -0.02 1.73 16 46 H 0.07 1.77 7.65 -2.39 -0.02 1.76 16 47 H 0.11 4.99 8.06 -2.91 -0.02 4.97 16 48 H 0.11 6.05 6.34 -2.91 -0.02 6.03 16 49 H 0.29 14.02 8.30 -92.71 -0.77 13.25 16 50 H 0.11 4.86 8.06 -2.91 -0.02 4.84 16 51 H 0.13 4.61 6.27 -2.91 -0.02 4.60 16 Total: -1.00 -67.96 411.86 -5.01 -72.97 By element: Atomic # 1 Polarization: 41.96 SS G_CDS: -1.11 Total: 40.85 kcal Atomic # 6 Polarization: -46.10 SS G_CDS: 5.78 Total: -40.32 kcal Atomic # 7 Polarization: -66.47 SS G_CDS: -7.15 Total: -73.62 kcal Atomic # 8 Polarization: -36.34 SS G_CDS: -4.56 Total: -40.90 kcal Atomic # 14 Polarization: 39.00 SS G_CDS: 2.03 Total: 41.02 kcal Total: -67.96 -5.01 -72.97 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000579354291.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.483 kcal (2) G-P(sol) polarization free energy of solvation -67.959 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -128.442 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.010 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.969 kcal (6) G-S(sol) free energy of system = (1) + (5) -133.452 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.24 seconds